ID:

rno-mir-666

 Coordinate:

chr6:133866523-133866621 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-55.0 -55.0 -54.4 -54.4

Sense Strand Reads

TCCAAAGACCCCTGCAAAGGATGGCCACTCCAAAGCCTGTCTACAAGATCCTGATTCTGCCTGCGTGGAGCGGGCACGGCTGTGAGAGCCCCCTAGGTACAGCGGGGCTGCAGCGTGATCGCCTGCTCACGCACAGGAAGTGACGACAGCGGTACACAAGCCACAGGGTTCTATGCTGCTGACGTACGGTGCTTAATGA
***********************************..((........((((((...((.((((.(((((((((((...(((((...((((((((......)).)))))))))))......)))))))).))).)))).))......))).)))........)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCT...................................................................... 24 1 1 122.00 122 122 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTT..................................................................... 25 2 1 88.00 88 82 6 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTTT.................................................................... 26 3 1 56.00 56 56 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCA...................................................................... 24 0 1 25.00 25 25 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTAT...................................................................... 24 2 1 23.00 23 22 0 1
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTAT.................................................................... 26 3 1 23.00 23 23 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCAT..................................................................... 25 1 1 16.00 16 15 0 1
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCATT.................................................................... 26 2 1 14.00 14 14 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTAA.................................................................... 26 3 1 12.00 12 12 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCAA..................................................................... 25 1 1 11.00 11 11 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTA..................................................................... 25 2 1 11.00 11 11 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTC....................................................................... 23 0 1 9.00 9 9 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTAA...................................................................... 24 1 1 7.00 7 7 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTTA.................................................................... 26 3 1 5.00 5 5 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTATT..................................................................... 25 3 1 5.00 5 5 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTTT...................................................................... 24 2 1 5.00 5 5 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTAAA..................................................................... 25 2 1 4.00 4 4 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTT....................................................................... 23 1 1 4.00 4 4 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCAAA...................................................................... 24 2 1 4.00 4 4 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTC..................................................................... 25 1 1 4.00 4 4 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCAAAC................................................................... 27 2 1 3.00 3 3 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTTTT..................................................................... 25 3 1 3.00 3 3 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCATTT................................................................... 27 3 1 3.00 3 3 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTGA.................................................................... 26 3 1 3.00 3 3 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCAAA.................................................................... 26 2 1 3.00 3 3 0 0
..........................................................................................................GCTGCAGCGTGATCGCCTGCTCTA..................................................................... 24 2 1 3.00 3 3 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCCTT.................................................................... 26 3 1 2.00 2 2 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTAGA................................................................... 27 3 1 2.00 2 2 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCAGA.................................................................... 26 2 1 2.00 2 2 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCC...................................................................... 24 1 1 2.00 2 2 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCATAT................................................................... 27 3 1 2.00 2 2 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTAAG..................................................................... 25 2 1 2.00 2 2 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTTAGA.................................................................... 26 3 1 2.00 2 2 0 0
.........................................................................................................GGCTGCAGAGTGATCGCCTGCTCT...................................................................... 24 2 1 2.00 2 2 0 0
..........................................................................................................GCTGCAGCGTGATCGCCTGCTCAAGA................................................................... 26 2 1 2.00 2 2 0 0
..........................................................................................................GCTGCAGCGTGATCGCCTGCTCAAT.................................................................... 25 2 1 1.00 1 1 0 0
...............................................................................................................AGCGTGATCGCCTGCTCAT..................................................................... 19 1 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGAGATCGCCTGCTCA...................................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGACCGCCTGCTCATT.................................................................... 26 3 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTAGT................................................................... 27 3 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCCGCTCA...................................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGATCT...................................................................... 24 2 1 1.00 1 1 0 0
....................................................................AGCGGGCACGGCTGTGAGAGCTCCTA......................................................................................................... 26 3 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGCGATCGCCTGCTCAT..................................................................... 25 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTAATT.................................................................... 26 3 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGCGATCGCCTGCTCAA..................................................................... 25 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCACAC................................................................... 27 1 1 1.00 1 1 0 0
.........................................................................................................GGATGCAGCGTGATCGCCTGCTCT...................................................................... 24 2 1 1.00 1 1 0 0
....................................................................AGCGGGCACGGCTGTGAGAGCCCT........................................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................GGCTACAGCGTGATCGCCTGCTCT...................................................................... 24 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCTAC.................................................................... 26 3 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTAC...................................................................... 24 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTAATCGCCTGCTCTT..................................................................... 25 3 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTTAT..................................................................... 25 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTTA...................................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGCGATCGCCTGCTCTT..................................................................... 25 3 1 1.00 1 0 1 0
..........................................................................................................GCTGCAGCGTGATCGCCTGCTCATT.................................................................... 25 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCACT...................................................................... 24 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTATA..................................................................... 25 3 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATAGCCTGCTCA...................................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCAAT.................................................................... 26 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTGT...................................................................... 24 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCAGCTCT...................................................................... 24 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCCGCGTGATCGCCTGCTCAA..................................................................... 25 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCACCGTGATCGCCTGCTCT...................................................................... 24 2 1 1.00 1 1 0 0
..........................................................................................................GCTGCAGCGTGATCCCCTGCTCA...................................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................GGGTGCAGCGTGATCGCCTGCTCTT..................................................................... 25 3 1 1.00 1 0 1 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCT........................................................................ 22 0 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTTATCGCCTGCTCTT..................................................................... 25 3 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGATCGCCTGCTCAAAAA.................................................................. 28 3 1 1.00 1 1 0 0
.........................................................................................................CGCTGCAGCGTGATCGCCTGCTC....................................................................... 23 1 1 1.00 1 1 0 0
....................................................................AGCGGGCACGGCTGTGAGAGCCCCTA......................................................................................................... 26 2 1 1.00 1 1 0 0
.........................................................................................................GGCTGCAGCGTGAACGCCTGCTCTT..................................................................... 25 3 2 0.50 1 1 0 0

Anti-sense strand reads

AGGTTTCTGGGGACGTTTCCTACCGGTGAGGTTTCGGACAGATGTTCTAGGACTAAGACGGACGCACCTCGCCCGTGCCGACACTCTCGGGGGATCCATGTCGCCCCGACGTCGCACTAGCGGACGAGTGCGTGTCCTTCACTGCTGTCGCCATGTGTTCGGTGTCCCAAGATACGACGACTGCATGCCACGAATTACT
***********************************..((........((((((...((.((((.(((((((((((...(((((...((((((((......)).)))))))))))......)))))))).))).)))).))......))).)))........)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:47 PM