ID:

rno-mir-665

 Coordinate:

chr6:133706457-133706550 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.4 -46.1 -46.0

Sense Strand Reads

AGGGCTGAGACAGGACAGGCAGGGCAGGGCTGAGCATTACCAGTGCTCCCAGAACAGGGTCTCCTTGAGGGGCCTCTGCCTCTATCCAGGATTATCTTTTTATGACCAGGAGGCTGAGGTCCCTTACAGGCGGCCTCTTACTCTCTCCTTGAGCCCTTCTGGAGACGTCTCACCTCATTCAGTTCAAACTCTGG
***********************************......((.((((..(((..((((((.((((((((((((((.((((((.....((.((((......)))))).)))))).))))))))))).))).)))).)).....)))....)))).))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAT................................................................... 23 1 1 52.00 52 52
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACT.................................................................. 24 1 1 33.00 33 33
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAA................................................................... 23 1 1 28.00 28 28
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACA.................................................................. 24 0 1 26.00 26 26
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATT.................................................................. 24 2 1 26.00 26 26
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAAT.................................................................. 24 2 1 22.00 22 22
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAAA.................................................................. 24 1 1 17.00 17 17
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAC................................................................... 23 0 1 16.00 16 16
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATA.................................................................. 24 1 1 15.00 15 15
........................................................................................................ACCAGGAGGCTGAGGTCCCTTA.................................................................... 22 0 1 12.00 12 12
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAAGT................................................................. 25 3 1 12.00 12 12
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATTT................................................................. 25 3 1 9.00 9 9
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATAT................................................................. 25 2 1 8.00 8 8
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACAA................................................................. 25 1 1 7.00 7 7
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAAAT................................................................. 25 2 1 7.00 7 7
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATAA................................................................. 25 2 1 7.00 7 7
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAAAAT................................................................ 26 3 1 4.00 4 4
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACTT................................................................. 25 2 1 4.00 4 4
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTT................................................................... 23 2 1 4.00 4 4
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAAG.................................................................. 24 2 1 4.00 4 4
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAAAA................................................................. 25 2 1 4.00 4 4
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACAT................................................................. 25 1 1 3.00 3 3
........................................................................................................ACCAGGAGGCTGAGGTCCCTTGAA.................................................................. 24 2 1 3.00 3 3
........................................................................................................ACCAGGAGGCTGAGGTCCCTT..................................................................... 21 0 1 3.00 3 3
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTTA.................................................................. 24 2 1 3.00 3 3
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACTA................................................................. 25 2 1 3.00 3 3
........................................................................................................ACCAGGAGGCTGAGGTCCCTTT.................................................................... 22 1 1 3.00 3 3
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAGT.................................................................. 24 2 1 3.00 3 3
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATAAT................................................................ 26 3 1 2.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACAAT................................................................ 26 2 1 2.00 2 2
.......................................................................................................AACCAGGAGGCTGAGGTCCCTTA.................................................................... 23 1 1 2.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAGA.................................................................. 24 1 1 2.00 2 2
.........................................................................................................CCAGGAGGCTGAGGTCCCTTAT................................................................... 22 1 1 2.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACG.................................................................. 24 1 1 2.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTTT.................................................................. 24 3 2 2.00 4 4
.........................................................................................................CCAGGAGGCTGAGGTCCCTTACT.................................................................. 23 1 1 2.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTTAT................................................................. 25 3 2 1.50 3 3
.........................................................................................................CCAGGAGGCTGAGGTCCCTTAAA.................................................................. 23 1 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGGCCCTTATT.................................................................. 24 3 1 1.00 1 1
.........................................................................................................CCAGGAGGCTGAGGTCCCTTACA.................................................................. 23 0 1 1.00 1 1
........................................................................................................ACCAGGAGGCTCAGGTCCCTTAAA.................................................................. 24 2 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGCCCCTTAC................................................................... 23 1 1 1.00 1 1
.........................................................................................................CCAGGAGGCTGAGGTCCCTTAC................................................................... 22 0 1 1.00 1 1
........................................................................................................ACCAGGAGGCCGAGGTCCCTTAT................................................................... 23 2 1 1.00 1 1
...........................................................................................................AGGAGGCTGAGGTCCCTTAT................................................................... 20 1 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGCCCCTTAAAA................................................................. 25 3 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATAAA................................................................ 26 3 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATAC................................................................. 25 2 1 1.00 1 1
........................................................................................................ACCCGGAGGCTGAGGTCCCTTAC................................................................... 23 1 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTGT................................................................... 23 2 1 1.00 1 1
........................................................................................................ACCCGGAGGCTGAGGTCCCTTAAA.................................................................. 24 2 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTAA.................................................................. 24 2 2 1.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTA................................................................... 23 2 2 1.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAAGA................................................................. 25 3 2 1.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTCC................................................................... 23 1 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAGAA................................................................. 25 2 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATAAGT............................................................... 27 3 1 1.00 1 1
.....................................................................................................ACTACCAGGAGGCTGAGGTCCCTT..................................................................... 24 2 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAATT................................................................. 25 3 3 1.00 3 3
........................................................................................................ACCAGGAGGCTGAGGCCCCTTACT.................................................................. 24 2 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAGAT................................................................. 25 2 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTAATA................................................................. 25 3 2 1.00 2 2
........................................................................................................ACCAGGAGGCTGAGGTCCCTTACAAC................................................................ 26 2 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTCAA.................................................................. 24 2 1 1.00 1 1
........................................................................................................ACACGGAGGCTGAGGTCCCTTAAA.................................................................. 24 3 1 1.00 1 1
........................................................................................................ACCAGGCGGCTGAGGTCCCTTAAA.................................................................. 24 2 1 1.00 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTAT.................................................................. 24 3 3 0.67 2 2
........................................................................................................ACGCGGAGGCTGAGGTCCCTTAT................................................................... 23 3 2 0.50 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTCTAA................................................................. 25 3 2 0.50 1 1
........................................................................................................ACCAGGAGGCTAAGGTCCCTTATT.................................................................. 24 3 2 0.50 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTCT................................................................... 23 2 2 0.50 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTAAT................................................................. 25 3 2 0.50 1 1
........................................................................................................ACCAGGAGGCTGACGTCCCTTAAT.................................................................. 24 3 2 0.50 1 1
........................................................................................................ACCAGGAGGCTGAGGGCCCTTATAT................................................................. 25 3 2 0.50 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTATTA................................................................. 25 3 2 0.50 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTAAA................................................................... 23 2 2 0.50 1 1
........................................................................................................ACCAGGAGGCTGAGGTCCCTTTAAC................................................................. 25 3 2 0.50 1 1
........................................................................................................TCCAGGAGGCTGAGGTCCCTTAGT.................................................................. 24 3 2 0.50 1 1
........................................................................................................ACAAGGAGGCTGAGGTCCCTTAA................................................................... 23 2 2 0.50 1 1
........................................................................................................CCCCGGAGGCTGAGGTCCCTTA.................................................................... 22 2 3 0.33 1 1
....................................................................................................TTATACCAGGAGGCTGAGGTCCC....................................................................... 23 3 7 0.29 2 2
........................................................................................................ACCAGGAGGCTCAGGTCCCTTAAT.................................................................. 24 3 4 0.25 1 1
.........................................................................................................CCAGGAGGCTGAGGTCCCTTTTT.................................................................. 23 3 12 0.08 1 1

Anti-sense strand reads

TCCCGACTCTGTCCTGTCCGTCCCGTCCCGACTCGTAATGGTCACGAGGGTCTTGTCCCAGAGGAACTCCCCGGAGACGGAGATAGGTCCTAATAGAAAAATACTGGTCCTCCGACTCCAGGGAATGTCCGCCGGAGAATGAGAGAGGAACTCGGGAAGACCTCTGCAGAGTGGAGTAAGTCAAGTTTGAGACC
***********************************......((.((((..(((..((((((.((((((((((((((.((((((.....((.((((......)))))).)))))).))))))))))).))).)))).)).....)))....)))).))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:46 PM