ID:

rno-mir-664-2

 Coordinate:

chr13:103192581-103192639 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.3 -28.1 -27.8
mature
star
  1. chr13:103192618-103192639 +
  2. chr18:47488065-47488086 +

Sense Strand Reads

AGCCCAGGGTCTCCTCCCTGCTCTGTTAATTAGACTTTGGAACATTGAAGCTGGCTGGGGAAAATGATTGGATAGAAAACATTATTCTATTCATTTACTCCCCAGCCTACAAATAAAAGCAATCACAGTACAATCAACTTCATTTTCTGCATATCTTTA
***********************************..............((((((((((((...(((.(((((((((.......))))))))).))).)))))))))..........)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
.................................................GCTGGCTGGGGAAAATGATTGGA....................................................................................... 23 0 1 48.00 48 47 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTACA................................................ 24 0 2 37.50 75 75 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAT................................................. 23 1 2 29.00 58 58 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACT................................................ 24 1 2 26.00 52 52 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAC................................................. 23 0 2 22.50 45 45 0 0
.................................................GCTGGCTGGGGAAAATGATTGG........................................................................................ 22 0 1 14.00 14 14 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAA................................................ 24 1 2 11.50 23 23 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAA................................................. 23 1 2 11.50 23 23 0 0
..................................................CTGGCTGGGGAAAATGATTGGA....................................................................................... 22 0 1 9.00 9 6 0 3
.......................................................................................TATTCATTTACTCCCCAGCCTATT................................................ 24 2 2 8.50 17 17 0 0
.................................................GCTGGCTGGGGAAAATGACTGGA....................................................................................... 23 1 1 8.00 8 0 8 0
.................................................GCTGGCTGGGGAAAATGATTGGT....................................................................................... 23 1 1 7.00 7 7 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTA.................................................. 22 0 2 6.50 13 13 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACAA............................................... 25 0 2 5.50 11 11 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAGA................................................ 24 1 2 5.00 10 10 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTATA................................................ 24 1 2 5.00 10 10 0 0
.................................................GCTGGCTGGGGAAAATGATTGGAT...................................................................................... 24 0 1 5.00 5 5 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAT................................................ 24 2 3 4.67 14 14 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAAA............................................... 25 1 2 4.50 9 9 0 0
.......................................................................................TATTCATTTACTCCCCAGCCT................................................... 21 0 2 4.50 9 9 0 0
........................................................................................ATTCATTTACTCCCCAGCCTACA................................................ 23 0 2 4.00 8 8 0 0
..................................................CTGGCTGGGGAAAATGATTGGAA...................................................................................... 23 1 1 4.00 4 4 0 0
.................................................GCTGGCTGGGGAAAATGATTGGAA...................................................................................... 24 1 1 4.00 4 4 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTATAA............................................... 25 1 2 3.50 7 7 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACAT............................................... 25 1 2 2.50 5 5 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAAG............................................... 25 2 2 2.50 5 5 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTTAAA............................................... 25 2 2 2.50 5 5 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTTT................................................. 23 2 2 2.50 5 5 0 0
..................................................CTGGCTGGGGAAAATGATTGG........................................................................................ 21 0 1 2.00 2 2 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACATT.............................................. 26 2 2 2.00 4 4 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTTAA................................................ 24 2 2 2.00 4 4 0 0
........................................................................................ATTCATTTACTCCCCAGCCTACT................................................ 23 1 2 2.00 4 4 0 0
................................................AGCTGGCTGGGGAAAATGATTGAA....................................................................................... 24 1 1 2.00 2 2 0 0
........................................................................................ATTCATTTACTCCCCAGCCTAC................................................. 22 0 2 2.00 4 4 0 0
.................................................GCTGGCTGGGGAACATGATTGGA....................................................................................... 23 1 1 2.00 2 2 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAAT............................................... 25 2 2 1.50 3 3 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTATTA............................................... 25 2 2 1.50 3 3 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTTTA................................................ 24 2 2 1.00 2 2 0 0
................................................AGCTGGCTGGGGAAAATGATTGGA....................................................................................... 24 0 1 1.00 1 1 0 0
.................................................GCTGGCTGGGCAAAATGACTGGA....................................................................................... 23 2 1 1.00 1 0 1 0
.........................................................................................TTCATTTACTCCCCAGCCTAAAA............................................... 23 1 2 1.00 2 2 0 0
.................................................GCTGGCTGGGGAAAATGATT.......................................................................................... 20 0 1 1.00 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTATGT............................................... 25 3 2 1.00 2 2 0 0
..................................................CTGGCTGGGGTAAATGATTGG........................................................................................ 21 1 1 1.00 1 1 0 0
..................................................CTGGCTGGGGAAAATGATTGGTA...................................................................................... 23 2 1 1.00 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTAAAGACA............................................ 27 3 1 1.00 1 1 0 0
.........................................................................................TTCATTTACTCCCCAGCCTACAAAT............................................. 25 0 2 1.00 2 2 0 0
......................................................................................ATATTCATTTACTCCCCAGCCTAAT................................................ 25 3 3 1.00 3 3 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACC................................................ 24 1 2 1.00 2 2 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTATGA............................................... 25 2 2 1.00 2 2 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACTT............................................... 25 2 2 1.00 2 2 0 0
..................................................CTGGCTGGGGAAAATGATTGGAT...................................................................................... 23 0 1 1.00 1 1 0 0
.....................................................................................TATATTCATTTACTCCCCAGCCTA.................................................. 24 1 2 1.00 2 2 0 0
...................................................TGGCTGGGGAAAATGATTGGA....................................................................................... 21 0 1 1.00 1 1 0 0
.................................................GCTGGCTGGGGAAAATGATTGGTT...................................................................................... 24 1 1 1.00 1 1 0 0
.................................................GCTGGCTGGGGAAAATGATTAGT....................................................................................... 23 2 1 1.00 1 1 0 0
.................................................GCTGGCTGGGGAAAATCATTGGA....................................................................................... 23 1 1 1.00 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACG................................................ 24 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCTCCAGCCTACT................................................ 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCGTTTACTCCCCAGCCTAT................................................. 23 2 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTCCA................................................ 23 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTGA................................................. 23 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTCCG................................................ 24 2 2 0.50 1 1 0 0
.......................................................................................GATTCATTTACTCCCCAGCCTAA................................................. 23 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAC................................................ 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCAATA................................................ 24 2 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTAAAT............................................... 24 2 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTACAA............................................... 24 0 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTAT................................................. 22 1 2 0.50 1 1 0 0
..........................................................................................TCATTTACTCCCCAGCCTAAA................................................ 21 1 2 0.50 1 1 0 0
.................................................GATGGCTGGGGAAAATGTTTGGAT...................................................................................... 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAACCTAC................................................. 23 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAGT................................................ 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCTCCAGCCTAT................................................. 23 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGACTATAA............................................... 25 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCACCAGCCTACA................................................ 24 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTTAAAG.............................................. 26 3 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTACAAT.............................................. 25 1 2 0.50 1 1 0 0
......................................................................................TTATTCATTTACTCCCCAGCCTAT................................................. 24 2 2 0.50 1 1 0 0
......................................................................................ATATTCATTTACTCCCCAGCCTAAA................................................ 25 2 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTAAT................................................ 23 2 4 0.50 2 2 0 0
.......................................................................................TATTCATTTACTCCCCAGACTACAA............................................... 25 1 2 0.50 1 1 0 0
.........................................................................................TTCATTTACTCCCCAGCCTACAT............................................... 23 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTATTG............................................... 25 3 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTGC................................................. 23 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTATAT............................................... 25 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCGCAGCCTAC................................................. 23 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTAATCCCCAGCCTACA................................................ 24 1 2 0.50 1 1 0 0
.........................................................................................TTCATTTACTCCCCAGCCTACA................................................ 22 0 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTCCT................................................ 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAG................................................ 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCC.................................................... 20 0 2 0.50 1 1 0 0
........................................................................................ATGCATTTACTCCCCAGCCT................................................... 20 1 2 0.50 1 0 0 1
...........................................................................................CATTTACTCCCCAGCCTAC................................................. 19 0 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTTCA................................................ 24 1 2 0.50 1 1 0 0
......................................................................................ATATTCATTTACTCCCCAGCC.................................................... 21 1 2 0.50 1 0 0 1
.......................................................................................TATTCATTTACTCCCCAGCCTACGT............................................... 25 2 2 0.50 1 1 0 0
......................................................................................ATATTCATTTACTCCCCAGCCTAC................................................. 24 1 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTACGT............................................... 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCACCAGCCTA.................................................. 22 1 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTAAA................................................ 23 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAACCTACTAT.............................................. 26 3 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACTA............................................... 25 1 2 0.50 1 1 0 0
.......................................................................................GATTCATTTACTCCCCAGCCTAGAA............................................... 25 2 2 0.50 1 1 0 0
..........................................................................................TCATTTACTCCCCAGCCTAC................................................. 20 0 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAG................................................. 23 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCATCCTAC................................................. 23 1 2 0.50 1 1 0 0
..................................................CTGGCTGGGGAAAATGATTGGAAT..................................................................................... 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCACCAGACTACA................................................ 24 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCACCAGCCTACC................................................ 24 2 2 0.50 1 1 0 0
........................................................................................ATTCATTTACTCCCCAGCCTAGAA............................................... 24 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAGAA............................................... 25 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACACCCCAGCCTATAA............................................... 25 2 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTCCA................................................ 24 1 2 0.50 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCCACA................................................ 24 1 3 0.33 1 1 0 0
.......................................................................................TATTCATTTACTCCTCAGCCTATA................................................ 24 2 3 0.33 1 1 0 0
.......................................................................................TATTCCTTTACTCCCCAGCCTAT................................................. 23 2 3 0.33 1 1 0 0
........................................................GGGGAAAATGATTGGA....................................................................................... 16 0 6 0.33 2 2 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTGT................................................. 23 2 3 0.33 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTATTT............................................... 25 3 3 0.33 1 1 0 0
.......................................................................................GATTCATTTACTCCCCAGCCTAAT................................................ 24 3 4 0.25 1 1 0 0
.........................................................................................TTCATTTACTCCCCAGCCTATT................................................ 22 2 4 0.25 1 1 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTTAC................................................ 24 3 4 0.25 1 1 0 0
.......................................................................................AATTCATTTACTCCCCAGCCTATT................................................ 24 3 5 0.20 1 1 0 0
......................................................................................ATATTCATTTACTCCCCAG...................................................... 19 1 5 0.20 1 0 0 1
.......................................................................................TATTCATTTACTCACCAGCCTAAT................................................ 24 3 6 0.17 1 1 0 0
...................................................................................CTATTATTCATTTACTCCCCAGC..................................................... 23 3 10 0.10 1 1 0 0
...........................................................................................CATTTACTCCCCAGCCTATT................................................ 20 2 20 0.10 2 2 0 0
........................................................................................CTTCATTTCCTCCCCAGCCTACT................................................ 23 3 20 0.05 1 1 0 0

Anti-sense strand reads

TCGGGTCCCAGAGGAGGGACGAGACAATTAATCTGAAACCTTGTAACTTCGACCGACCCCTTTTACTAACCTATCTTTTGTAATAAGATAAGTAAATGAGGGGTCGGATGTTTATTTTCGTTAGTGTCATGTTAGTTGAAGTAAAAGACGTATAGAAAT
***********************************..............((((((((((((...(((.(((((((((.......))))))))).))).)))))))))..........)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:35 PM