ID:

rno-mir-664-1

 Coordinate:

chr18:47488028-47488086 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.0 -29.9 -29.9
mature
  1. chr13:103192618-103192639 +
  2. chr18:47488065-47488086 +
star

Sense Strand Reads

GAGCCATGCCTATCCACTGAATATGTTAAGATTAAGAATTATAGCATCTGCTGGCTGGGGAAAAAGATTGGATAGAAAACATTATTCTATTCATTTACTCCCCAGCCTACAAATGAAAAAAATTCTATCATGTAAAATAATAATATTACAAAACCATTT
***********************************.........(((.((..(((((((((....((.(((((((((.......))))))))).))..)))))))))..)).))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.......................................................................................TATTCATTTACTCCCCAGCCTACA................................................ 24 0 2 37.50 75 75 0
.......................................................................................TATTCATTTACTCCCCAGCCTAT................................................. 23 1 2 29.00 58 58 0
.......................................................................................TATTCATTTACTCCCCAGCCTACT................................................ 24 1 2 26.00 52 52 0
.......................................................................................TATTCATTTACTCCCCAGCCTAC................................................. 23 0 2 22.50 45 45 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAA................................................ 24 1 2 11.50 23 23 0
.......................................................................................TATTCATTTACTCCCCAGCCTAA................................................. 23 1 2 11.50 23 23 0
.......................................................................................TATTCATTTACTCCCCAGCCTATT................................................ 24 2 2 8.50 17 17 0
.......................................................................................TATTCATTTACTCCCCAGCCTA.................................................. 22 0 2 6.50 13 13 0
.......................................................................................TATTCATTTACTCCCCAGCCTACAA............................................... 25 0 2 5.50 11 11 0
.......................................................................................TATTCATTTACTCCCCAGCCTATA................................................ 24 1 2 5.00 10 10 0
.......................................................................................TATTCATTTACTCCCCAGCCTAGA................................................ 24 1 2 5.00 10 10 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAT................................................ 24 2 3 4.67 14 14 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAAA............................................... 25 1 2 4.50 9 9 0
.......................................................................................TATTCATTTACTCCCCAGCCT................................................... 21 0 2 4.50 9 9 0
........................................................................................ATTCATTTACTCCCCAGCCTACA................................................ 23 0 2 4.00 8 8 0
.......................................................................................TATTCATTTACTCCCCAGCCTATAA............................................... 25 1 2 3.50 7 7 0
.......................................................................................TATTCATTTACTCCCCAGCCTTT................................................. 23 2 2 2.50 5 5 0
.......................................................................................TATTCATTTACTCCCCAGCCTACAT............................................... 25 1 2 2.50 5 5 0
.......................................................................................TATTCATTTACTCCCCAGCCTTAAA............................................... 25 2 2 2.50 5 5 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAAG............................................... 25 2 2 2.50 5 5 0
........................................................................................ATTCATTTACTCCCCAGCCTACT................................................ 23 1 2 2.00 4 4 0
........................................................................................ATTCATTTACTCCCCAGCCTAC................................................. 22 0 2 2.00 4 4 0
.......................................................................................TATTCATTTACTCCCCAGCCTTAA................................................ 24 2 2 2.00 4 4 0
.......................................................................................TATTCATTTACTCCCCAGCCTACATT.............................................. 26 2 2 2.00 4 4 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAAT............................................... 25 2 2 1.50 3 3 0
.......................................................................................TATTCATTTACTCCCCAGCCTATTA............................................... 25 2 2 1.50 3 3 0
.......................................................................................TATTCATTTACTCCCCAGCCTACC................................................ 24 1 2 1.00 2 2 0
.......................................................................................TATTCATTTACTCCCCAGCCTATGA............................................... 25 2 2 1.00 2 2 0
.........................................................................................TTCATTTACTCCCCAGCCTACAAAT............................................. 25 0 2 1.00 2 2 0
.....................................................................................TATATTCATTTACTCCCCAGCCTA.................................................. 24 1 2 1.00 2 2 0
.......................................................................................TATTCATTTACTCCCCAGCCTTTA................................................ 24 2 2 1.00 2 2 0
.........................................................................................TTCATTTACTCCCCAGCCTAAAA............................................... 23 1 2 1.00 2 2 0
......................................................................................ATATTCATTTACTCCCCAGCCTAAT................................................ 25 3 3 1.00 3 3 0
.......................................................................................TATTCATTTACTCCCCAGCCTACTT............................................... 25 2 2 1.00 2 2 0
.......................................................................................TATTCATTTACTCCCCAGCCTATGT............................................... 25 3 2 1.00 2 2 0
.........................................................................................TTCATTTACTCCCCAGCCTACAT............................................... 23 1 2 0.50 1 1 0
..........................................................................................TCATTTACTCCCCAGCCTAAA................................................ 21 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTTAAAG.............................................. 26 3 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCATCCTAC................................................. 23 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCGCAGCCTAC................................................. 23 1 2 0.50 1 1 0
...........................................................................................CATTTACTCCCCAGCCTAC................................................. 19 0 2 0.50 1 1 0
.......................................................................................GATTCATTTACTCCCCAGCCTAGAA............................................... 25 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTCCG................................................ 24 2 2 0.50 1 1 0
........................................................................................ATTCATTTACTCCCCAGCCTAGAA............................................... 24 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTAG................................................. 23 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTAGAA............................................... 25 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTGC................................................. 23 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTATAT............................................... 25 2 2 0.50 1 1 0
........................................................................................ATTCATTTACTCCCCAGCCTACGT............................................... 24 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTACG................................................ 24 1 2 0.50 1 1 0
.......................................................................................TATTCGTTTACTCCCCAGCCTAT................................................. 23 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCTCCAGCCTAT................................................. 23 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTCCT................................................ 24 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTGA................................................. 23 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCTCCAGCCTACT................................................ 24 2 2 0.50 1 1 0
.......................................................................................GATTCATTTACTCCCCAGCCTAA................................................. 23 2 2 0.50 1 1 0
.......................................................................................TATTCATTTAATCCCCAGCCTACA................................................ 24 1 2 0.50 1 1 0
.........................................................................................TTCATTTACTCCCCAGCCTACA................................................ 22 0 2 0.50 1 1 0
........................................................................................ATTCATTTACTCCCCAGCCTAAT................................................ 23 2 4 0.50 2 2 0
.......................................................................................TATTCATTTACACCCCAGCCTATAA............................................... 25 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAACCTACTAT.............................................. 26 3 2 0.50 1 1 0
........................................................................................ATTCATTTACTCCCCAGCCTACAAT.............................................. 25 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTAGT................................................ 24 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTCCA................................................ 24 1 2 0.50 1 1 0
..........................................................................................TCATTTACTCCCCAGCCTAC................................................. 20 0 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCACCAGCCTA.................................................. 22 1 2 0.50 1 1 0
......................................................................................ATATTCATTTACTCCCCAGCCTAAA................................................ 25 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGACTATAA............................................... 25 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGACTACAA............................................... 25 1 2 0.50 1 1 0
......................................................................................TTATTCATTTACTCCCCAGCCTAT................................................. 24 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCC.................................................... 20 0 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAG................................................ 24 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCACCAGACTACA................................................ 24 2 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTATTG............................................... 25 3 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTTCA................................................ 24 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAACCTAC................................................. 23 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTACTA............................................... 25 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCAATA................................................ 24 2 2 0.50 1 1 0
......................................................................................ATATTCATTTACTCCCCAGCCTAC................................................. 24 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTACGT............................................... 25 2 2 0.50 1 1 0
........................................................................................ATTCATTTACTCCCCAGCCTAT................................................. 22 1 2 0.50 1 1 0
......................................................................................ATATTCATTTACTCCCCAGCC.................................................... 21 1 2 0.50 1 0 1
.......................................................................................TATTCATTTACTCACCAGCCTACC................................................ 24 2 2 0.50 1 1 0
........................................................................................ATTCATTTACTCCCCAGCCTAAAT............................................... 24 2 2 0.50 1 1 0
........................................................................................ATTCATTTACTCCCCAGCCTCCA................................................ 23 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTAAC................................................ 24 2 2 0.50 1 1 0
........................................................................................ATGCATTTACTCCCCAGCCT................................................... 20 1 2 0.50 1 0 1
........................................................................................ATTCATTTACTCCCCAGCCTAAA................................................ 23 1 2 0.50 1 1 0
........................................................................................ATTCATTTACTCCCCAGCCTACAA............................................... 24 0 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCACCAGCCTACA................................................ 24 1 2 0.50 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTGT................................................. 23 2 3 0.33 1 1 0
.......................................................................................TATTCCTTTACTCCCCAGCCTAT................................................. 23 2 3 0.33 1 1 0
.......................................................................................TATTCATTTACTCCTCAGCCTATA................................................ 24 2 3 0.33 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTATTT............................................... 25 3 3 0.33 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCCACA................................................ 24 1 3 0.33 1 1 0
.......................................................................................GATTCATTTACTCCCCAGCCTAAT................................................ 24 3 4 0.25 1 1 0
.......................................................................................TATTCATTTACTCCCCAGCCTTAC................................................ 24 3 4 0.25 1 1 0
.........................................................................................TTCATTTACTCCCCAGCCTATT................................................ 22 2 4 0.25 1 1 0
.......................................................................................AATTCATTTACTCCCCAGCCTATT................................................ 24 3 5 0.20 1 1 0
......................................................................................ATATTCATTTACTCCCCAG...................................................... 19 1 5 0.20 1 0 1
.......................................................................................TATTCATTTACTCACCAGCCTAAT................................................ 24 3 6 0.17 1 1 0
...........................................................................................CATTTACTCCCCAGCCTATT................................................ 20 2 20 0.10 2 2 0
...................................................................................CTATTATTCATTTACTCCCCAGC..................................................... 23 3 10 0.10 1 1 0
........................................................................................CTTCATTTCCTCCCCAGCCTACT................................................ 23 3 20 0.05 1 1 0

Anti-sense strand reads

CTCGGTACGGATAGGTGACTTATACAATTCTAATTCTTAATATCGTAGACGACCGACCCCTTTTTCTAACCTATCTTTTGTAATAAGATAAGTAAATGAGGGGTCGGATGTTTACTTTTTTTAAGATAGTACATTTTATTATTATAATGTTTTGGTAAA
***********************************.........(((.((..(((((((((....((.(((((((((.......))))))))).))..)))))))))..)).))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:39 PM