ID:

rno-mir-6324

 Coordinate:

chr11:36383529-36383649 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.2 -43.0 -43.0

Sense Strand Reads

AAAACTTACATTTACTTATTTTGAGGTCTAGGCATGCCATGGTATGTTGGTGGAATCACCAGATAGCTGGGGTCAAGGTGCTCTGCTGACTGCCTATGGGCTGTGGGATCCAACTGAGTCAGTAGGCCAGACAGCAAGCACCTTTATCCCTTGAGCAATTTCACTGACCCTGAATTAACTCTTTACTTTGAAATGAAAATGACGTGGTACCAGTTTGGTTT
******************************************************************..(((((.((((((((.(((((.((((((((.((((..((.......)).)))).))))).))).))))))))))))).)))))....******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.................................................................................TCTGCTGACTGCCTATGGGCTAT..................................................................................................................... 23 1 1 36.00 36 35 1
.................................................................................TCTGCTGACTGCCTATGGGCT....................................................................................................................... 21 0 1 24.00 24 21 3
..............................................................................TGCTCTGCTGACTGCCTATGGGCT....................................................................................................................... 24 0 1 20.00 20 19 1
..............................................................................TGCTCTGCTGACTGCCTATGGGC........................................................................................................................ 23 0 1 11.00 11 11 0
.................................................................................TCTGCTGACTGCCTATGGGCTTT..................................................................................................................... 23 1 1 9.00 9 9 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTTAT.................................................................................................................... 27 3 1 9.00 9 9 0
..............................................................................TGCTCTGCTGACTGCCTATGGGT........................................................................................................................ 23 1 1 9.00 9 9 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCT................................................................................. 22 1 1 8.00 8 6 2
..............................................................................TGCTCTGCTGACTGCCTATGGGA........................................................................................................................ 23 1 1 5.00 5 5 0
.................................................................................TCTGCTGACTGCCTATGGGCTTTT.................................................................................................................... 24 2 1 5.00 5 5 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTAT..................................................................................................................... 26 1 1 4.00 4 4 0
.................................................................................TCTGCTGACTGCCTATGGGC........................................................................................................................ 20 0 1 4.00 4 4 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGC.................................................................................. 21 0 1 4.00 4 3 1
......................................................................................................................TCAGTAGGCCAGACAGCAAGCACT............................................................................... 24 1 1 4.00 4 4 0
.................................................................................TCTGCTGACTGCCTATGGGCTT...................................................................................................................... 22 1 1 4.00 4 3 1
..............................................................................TGCTCTGCTGACTGCCTATGGGCAA...................................................................................................................... 25 2 1 3.00 3 3 0
.................................................................................TCTGCTGACTGCCTATGGGCTATTT................................................................................................................... 25 3 1 3.00 3 3 0
.................................................................................TCTGCTGACTGCCTATGGGCTGTTAAA................................................................................................................. 27 3 1 3.00 3 3 0
.................................................................................TCTGCTGACTGCCTATGGGCTATA.................................................................................................................... 24 2 1 3.00 3 3 0
.................................................................................TCTGCTGACTGCCTATGGGCTATT.................................................................................................................... 24 2 1 3.00 3 3 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTTT..................................................................................................................... 26 1 1 3.00 3 3 0
.................................................................................TCTGCTGACTGCCTATGGGCTCT..................................................................................................................... 23 1 1 3.00 3 3 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTTTTA................................................................................................................... 28 3 1 3.00 3 3 0
.................................................................................TCTGCTGACTGCCTATGGGCTTTTT................................................................................................................... 25 3 3 2.33 7 7 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTAAA.................................................................................................................... 27 3 1 2.00 2 2 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCACC............................................................................... 24 0 1 2.00 2 2 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTTTT.................................................................................................................... 27 2 1 2.00 2 2 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTCTC.................................................................................................................... 27 2 1 2.00 2 2 0
.................................................................................TCTGCTGACTGCCTATGGGCTTA..................................................................................................................... 23 2 1 2.00 2 2 0
.................................................................................TCTGCTGACTGCCTATGGGCA....................................................................................................................... 21 1 1 2.00 2 1 1
.................................................................................TCTGCTGACTGCCTATGGGCTGTA.................................................................................................................... 24 1 1 2.00 2 2 0
..............................................................................TGCTCTGCTGACTGCCTATGGGAA....................................................................................................................... 24 2 1 2.00 2 2 0
..............................................................................TGCTCTGCTGACTGCCTATGGGAT....................................................................................................................... 24 1 1 2.00 2 2 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTT...................................................................................................................... 25 1 1 2.00 2 2 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCAA................................................................................ 23 1 1 2.00 2 2 0
.................................................................................TCTGCTGACTGCCTATGGGCTG...................................................................................................................... 22 0 1 2.00 2 2 0
.................................................................................TCTGCTGACTGCCTATGGGCTAG..................................................................................................................... 23 2 1 2.00 2 2 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCA....................................................................................................................... 24 1 1 2.00 2 2 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGAA................................................................................. 22 1 1 2.00 2 2 0
.................................................................................TCTGCTGACTGCCTATGGG......................................................................................................................... 19 0 1 2.00 2 0 2
.................................................................................TCTGCTGACTGCCTATGGGCTAAA.................................................................................................................... 24 3 3 1.67 5 5 0
.................................................................................TCTGCTGACTGCCTATGGGCTAA..................................................................................................................... 23 2 2 1.50 3 3 0
.................................................................................TCTGCTGACTGCCTATGGGCTCTAT................................................................................................................... 25 3 1 1.00 1 1 0
.....................................................................................................................GTCAGTAGGCCAGACAGCAAGA.................................................................................. 22 1 1 1.00 1 0 1
..............................................................................TGCTCTGCTGTCTGCCTATGGGAT....................................................................................................................... 24 2 1 1.00 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCA................................................................................. 22 0 1 1.00 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAA................................................................................... 20 1 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTTTAT................................................................................................................... 28 3 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTCTT.................................................................................................................... 24 2 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGACTAA..................................................................................................................... 26 3 1 1.00 1 1 0
......................................................................................................................TCAGTAGGCCAGACCGCAAGC.................................................................................. 21 1 1 1.00 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCAC................................................................................ 23 0 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCATTGT................................................................................................................... 28 3 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTATAT................................................................................................................... 28 3 1 1.00 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCAT................................................................................ 23 1 1 1.00 1 0 1
.......................................................................................................................CAGTAGGCCAGACAGCAAGCT................................................................................. 21 1 1 1.00 1 0 1
..............................................................................TGCTCTGCTGACTGCCTATGGGCTTTTT................................................................................................................... 28 3 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTTAA.................................................................................................................... 24 3 5 1.00 5 5 0
.................................................................................TCTGCTGACTGCCTATGG.......................................................................................................................... 18 0 1 1.00 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGTAT................................................................................ 23 2 2 1.00 2 2 0
.................................................................................TCTGCTGACTGCCTATGGGCTC...................................................................................................................... 22 1 1 1.00 1 1 0
...............................................................................GCTCTGCTGACTGCCTATGGGCAT...................................................................................................................... 24 2 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTA...................................................................................................................... 22 1 1 1.00 1 1 0
..............................................................................TGCTCTGCTTACTGCCTATGGGCT....................................................................................................................... 24 1 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTTAT.................................................................................................................... 24 3 2 1.00 2 2 0
...............................................................................GCTCTGCTGACTGCCTATGGGT........................................................................................................................ 22 1 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTTAA.................................................................................................................... 27 3 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTCTTT................................................................................................................... 25 3 2 1.00 2 2 0
.............................................................................ATGCTCTGCTGACTGCCTATGGGC........................................................................................................................ 24 1 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTGTGGGATCCA............................................................................................................. 31 0 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTGTGAA.................................................................................................................. 26 2 1 1.00 1 1 0
..................................................................................CTGCTGACTGCCTATGGG......................................................................................................................... 18 0 1 1.00 1 0 1
.................................................................................TCTGCTGACTGCCTATGGGCTATGT................................................................................................................... 25 2 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTGTATAAT................................................................................................................ 28 3 1 1.00 1 0 1
................................................................................ATCTGCTGACTGCCTATGGGCTAT..................................................................................................................... 24 2 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCAAG..................................................................................................................... 26 3 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTAA..................................................................................................................... 26 2 1 1.00 1 1 0
.....................................................................................................................GTCAGTAGGCCAGACAGCAAGTAT................................................................................ 24 2 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTTTAT................................................................................................................... 25 3 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCAT...................................................................................................................... 25 2 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTATAA................................................................................................................... 25 3 1 1.00 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGCTGAT.................................................................................................................... 27 2 1 1.00 1 1 0
...............................................................................GCTCTGCTGACTGCCTATGGGCAA...................................................................................................................... 24 2 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTTTA.................................................................................................................... 24 2 1 1.00 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTATAT................................................................................................................... 25 3 3 0.67 2 2 0
.................................................................................TCTGCTGACTGCCTATGGGCAA...................................................................................................................... 22 2 3 0.67 2 2 0
...............................................................................GCTCTGCTGAATGCCTATTGGC........................................................................................................................ 22 2 2 0.50 1 1 0
.................................................................................TCTGCTGACTGCCTCTGGGCT....................................................................................................................... 21 1 2 0.50 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCCA................................................................................ 23 2 2 0.50 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCTAGT.................................................................................................................... 24 3 2 0.50 1 1 0
.................................................................................TCTACTGACTGCCTATGGGCTTTT.................................................................................................................... 24 3 2 0.50 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGA........................................................................................................................ 20 1 2 0.50 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGT.................................................................................. 21 1 2 0.50 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCTAT............................................................................... 24 3 2 0.50 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAAAA................................................................................. 22 2 2 0.50 1 1 0
..............................................................................TGCTCTGCTGACTGCCTATGGGTAT...................................................................................................................... 25 3 3 0.33 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGAAGA............................................................................... 24 3 3 0.33 1 1 0
......................................................................................................................TCAGTAGGCCAGACAGCAAGCTAA............................................................................... 24 3 4 0.25 1 1 0
...............................................................................GCTCTCCTGACTGCCTATGGGA........................................................................................................................ 22 2 4 0.25 1 1 0
.................................................................................TCTGCTGACTGCCTATGGGCAAA..................................................................................................................... 23 3 8 0.25 2 2 0
.................................................................................TCTGCTGACTGCCTATGGGAA....................................................................................................................... 21 2 11 0.18 2 2 0

Anti-sense strand reads

TTTTGAATGTAAATGAATAAAACTCCAGATCCGTACGGTACCATACAACCACCTTAGTGGTCTATCGACCCCAGTTCCACGAGACGACTGACGGATACCCGACACCCTAGGTTGACTCAGTCATCCGGTCTGTCGTTCGTGGAAATAGGGAACTCGTTAAAGTGACTGGGACTTAATTGAGAAATGAAACTTTACTTTTACTGCACCATGGTCAAACCAAA
*******************************************************************..(((((.((((((((.(((((.((((((((.((((..((.......)).)))).))))).))).))))))))))))).)))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:33 PM