ID:

rno-mir-582

 Coordinate:

chr2:40863750-40863830 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.9

Sense Strand Reads

ACAGACTGAGCCCGGCTGAACACCACTGGCCAATCTCCCTAGTAATCTGTACTCTTTGGATACAGTTGTTCAACCAGTTACTAATCTAACTAATTGTAACCTGTTGAACAACTGAACCCAAAGGGTGCAAAGTTGGAAACATTTCATTGAGAAGTCAGCTGAGGACAAAGGAAGCTCGGCC
********************************************...((((((((((((...((((((((((((..(((((..............)))))..))))))))))))...))))))))))))......********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...........................................................ATACAGTTGTTCAACCAGTTACT................................................................................................... 23 0 1 24.00 24 24 0
...........................................................ATACAGTTGTTCAACCAGTTAC.................................................................................................... 22 0 1 11.00 11 11 0
...........................................................ATACAGTTGTTCAACCAGTTACA................................................................................................... 23 1 1 7.00 7 7 0
............................................................TACAGTTGTTCAACCAGTTACT................................................................................................... 22 0 1 4.00 4 3 1
.................................................................................................AACCTGTTGAACAACTGAACCCATT........................................................... 25 2 1 3.00 3 3 0
.................................................................................................AACCTGTTGAACAACTGAACCCA............................................................. 23 0 1 3.00 3 3 0
............................................................TACAGTTGTTCAACCAGTTA..................................................................................................... 20 0 1 3.00 3 3 0
...........................................................ATACAGTTGTTCAACCAGTTT..................................................................................................... 21 1 1 2.00 2 2 0
.............................................................ACAGTTGTTCAACCAGTTACT................................................................................................... 21 0 1 2.00 2 2 0
.................................................................................................AACCTGTTGAACAACTGAACCC.............................................................. 22 0 1 2.00 2 1 1
...........................................................ATACAGTTGTTCAACCAGTTAGA................................................................................................... 23 2 1 2.00 2 2 0
...........................................................ATACAGTTGTTCAACCAGTTAT.................................................................................................... 22 1 1 2.00 2 2 0
...........................................................ATACAGTTGTTCAACCAGTTA..................................................................................................... 21 0 1 2.00 2 2 0
...........................................................ATACAGTTGTTAAACCAGTTACT................................................................................................... 23 1 1 2.00 2 2 0
...........................................................ATACAGTTGTTCAACCAGTTAG.................................................................................................... 22 1 1 2.00 2 2 0
...........................................................ATACAGTTGTTCAACCAGTT...................................................................................................... 20 0 1 2.00 2 0 2
................................................................................................TAACCTGTTGAACAACTGAA................................................................. 20 0 1 1.00 1 0 1
...........................................................ATACAGTTGTTCACCCAGTTACT................................................................................................... 23 1 1 1.00 1 1 0
............................................................TACAGTTGTTCAACCAGTTAA.................................................................................................... 21 1 1 1.00 1 1 0
...........................................................ATACAGTTGTTCAACCAGTTAAA................................................................................................... 23 2 1 1.00 1 1 0
...........................................................ATACCGTTGTTCAACCAGTTAGA................................................................................................... 23 3 1 1.00 1 1 0
............................................................TACAGTTGTTCAACCAGTTACTA.................................................................................................. 23 0 1 1.00 1 1 0
...........................................................ATACAGTTGTTCAACCAGT....................................................................................................... 19 0 1 1.00 1 0 1
...........................................................ATACAGTTGTTCACCCAGTTACTAT................................................................................................. 25 2 1 1.00 1 1 0
.................................................................................................AACCTGTTGAACAACTGAACCAA............................................................. 23 1 1 1.00 1 1 0
...........................................................ATACAGTTGTCCAACCAGTTACT................................................................................................... 23 1 1 1.00 1 1 0
...........................................................ATACAGTTGTTCAACCAGTTAAG................................................................................................... 23 2 1 1.00 1 1 0
.................................................................................................AACCTGTTGAACAACTGAACA............................................................... 21 1 1 1.00 1 0 1
................................................................................................TAACCTGTTGAACAACTGA.................................................................. 19 0 1 1.00 1 1 0
...........................................................ATACAGTTGTTAAACCAGTTACTAAGA............................................................................................... 27 3 1 1.00 1 1 0
.............................................................ACAGTTGTTCAACCAGTTAA.................................................................................................... 20 1 1 1.00 1 1 0
.................................................................................................AACCTGTTGAACACCTGAACCCAAT........................................................... 25 2 1 1.00 1 1 0
...........................................................ATACAGTTGTTCAACCAGTTACAA.................................................................................................. 24 1 1 1.00 1 1 0
................................................................................................TAACCTGTTGAACAACTGAATT............................................................... 22 2 2 0.50 1 0 1
.............................................................ACAGTTGTTCAACCAGTTACAT.................................................................................................. 22 2 2 0.50 1 1 0
.................................................................................................AACCTGTTGAACAACTGAACCAT............................................................. 23 2 2 0.50 1 1 0
...........................................................TTACAGTTGTTTAACCAGTTACC................................................................................................... 23 3 2 0.50 1 1 0
................................................................................................AAACCTGTTGAACAACTGAACCC.............................................................. 23 1 2 0.50 1 0 1
....................................................................................................CTGTTGAACAACTGAAC................................................................ 17 0 2 0.50 1 0 1
..................................................................................................ACCTGTTGAACAACTGC.................................................................. 17 1 10 0.10 1 1 0

Anti-sense strand reads

TGTCTGACTCGGGCCGACTTGTGGTGACCGGTTAGAGGGATCATTAGACATGAGAAACCTATGTCAACAAGTTGGTCAATGATTAGATTGATTAACATTGGACAACTTGTTGACTTGGGTTTCCCACGTTTCAACCTTTGTAAAGTAACTCTTCAGTCGACTCCTGTTTCCTTCGAGCCGG
**********************************************...((((((((((((...((((((((((((..(((((..............)))))..))))))))))))...))))))))))))......******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:40 PM