ID:rno-mir-540 |
Coordinate:chr6:133706202-133706285 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
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CAGGTCTTTCCTTGGGGTGGGTGGGGACTATCTACCCCTGGTGGGACATTCCCTGGGGCTGGGCCAAGGGTCACCCTCTGACTCTGTGGCCAAGGGTAGACAGGTCAGAGGTCGATCCTGGGCCTACTCTGGGGCTTTTCCCACTGGGATTTCAGGAGCTGTTCTCTCCTGGAAGTCCTCTGAG
*************************************************.((((((((.((((((.((((((..((((((((.((((.(((...)))..))))))))))))..)))))).))))))))))))))....********************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528819 10dpp_testes |
GSM1528818 Adult_testes_Mili_IP |
GSM1528817 Adult_testes |
|---|---|---|---|---|---|---|---|---|
| ................................................................CAAGGGTCACCCTCTGACTCTGT................................................................................................. | 23 | 0 | 1 | 41.00 | 41 | 41 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCAAT.......................................................... | 25 | 3 | 1 | 18.00 | 18 | 18 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCAT........................................................... | 24 | 1 | 1 | 16.00 | 16 | 16 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCAA........................................................... | 24 | 2 | 1 | 10.00 | 10 | 10 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGAAT........................................................... | 24 | 2 | 1 | 10.00 | 10 | 10 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTA................................................................................................ | 24 | 1 | 1 | 10.00 | 10 | 10 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCATT.......................................................... | 25 | 2 | 1 | 9.00 | 9 | 9 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCAAA.......................................................... | 25 | 2 | 1 | 8.00 | 8 | 8 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGC............................................................. | 22 | 0 | 1 | 8.00 | 8 | 8 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGAAA........................................................... | 24 | 3 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGAT............................................................ | 23 | 2 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTAT............................................................................................... | 25 | 2 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTT................................................................................................ | 24 | 1 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGAA............................................................ | 23 | 2 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| ......................................................................................................GGTCAGAGGTCGATCCTGGGCAA........................................................... | 23 | 2 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCA............................................................ | 23 | 1 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTTT............................................................................................... | 25 | 2 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCTTT.......................................................... | 25 | 2 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTAA............................................................................................... | 25 | 2 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCTTTT......................................................... | 26 | 3 | 1 | 3.00 | 3 | 0 | 2 | 1 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCAGA.......................................................... | 25 | 2 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGATT........................................................... | 24 | 2 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCATA.......................................................... | 25 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCTAT.......................................................... | 25 | 3 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCT................................................................................................... | 21 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGA............................................................. | 22 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGA................................................................................................. | 23 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCG............................................................ | 23 | 1 | 1 | 3.00 | 3 | 0 | 3 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTTAT.............................................................................................. | 26 | 3 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCTAAA......................................................... | 26 | 3 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTGT............................................................................................... | 25 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCAGT.......................................................... | 25 | 3 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGATTT.......................................................... | 25 | 3 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCATAA......................................................... | 26 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCAG........................................................... | 24 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTGA............................................................................................... | 25 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGG.............................................................. | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................AAGGGTCACCCTCTGACTCTGTTA............................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCAAAA......................................................... | 26 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCTTTA......................................................... | 26 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCTTTAT........................................................ | 27 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................CAAGGGTCCCCCTCTGACTCT................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTAGATCCTGGGC............................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGG............................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTG................................................................................................ | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTCT............................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................AAGGGTCACCTTCTGACTCTGT................................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGAGA............................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ....................................................................................................AAGGTCAGAGGTCGATCCTGGGCATT.......................................................... | 26 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCGTT.......................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCTTAGA........................................................ | 27 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGATAA.......................................................... | 25 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................CAAGGGTCACCCTGTGACTCTGT................................................................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................TGGTCAGAGGTCGATCCTGGGCAA........................................................... | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGT............................................................. | 22 | 1 | 2 | 1.00 | 2 | 1 | 0 | 1 |
| .....................................................................................................AGGTCAGAGGTAGATCCTGGGCT............................................................ | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGAAAA.......................................................... | 25 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTGAT.............................................................................................. | 26 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................CAAGGGTCACCATCTGCCTCTGT................................................................................................. | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ....................................................................................................AAGGTCAGAGGTCGATCCTGGGCAA........................................................... | 25 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCATTAT........................................................ | 27 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................AAGGGTCACCCTCTGACTCTGTAA............................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGTAT........................................................... | 24 | 2 | 8 | 0.63 | 5 | 5 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGAGT........................................................... | 24 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 |
| ................................................................CAAGGGTCACCCTCTGACTCTGTAAA.............................................................................................. | 26 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGTTTAA......................................................... | 26 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGATCGATCCTGGGCAG........................................................... | 24 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGAGCAAA.......................................................... | 25 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGTTTT.......................................................... | 25 | 3 | 7 | 0.43 | 3 | 3 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCATTT......................................................... | 26 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGCGTTT......................................................... | 26 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGTAA........................................................... | 24 | 3 | 18 | 0.28 | 5 | 5 | 0 | 0 |
| .....................................................................................................AGGCCAGAGGTCGATCCTGGGCA............................................................ | 23 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGAAC........................................................... | 24 | 3 | 7 | 0.14 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGAGA........................................................... | 24 | 3 | 9 | 0.11 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGACAGAGGTCGATCCTGGGTT............................................................ | 23 | 3 | 13 | 0.08 | 1 | 1 | 0 | 0 |
| .....................................................................................................AGGTCAGAGGTCGATCCTGGGTATT.......................................................... | 25 | 3 | 17 | 0.06 | 1 | 1 | 0 | 0 |
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GTCCAGAAAGGAACCCCACCCACCCCTGATAGATGGGGACCACCCTGTAAGGGACCCCGACCCGGTTCCCAGTGGGAGACTGAGACACCGGTTCCCATCTGTCCAGTCTCCAGCTAGGACCCGGATGAGACCCCGAAAAGGGTGACCCTAAAGTCCTCGACAAGAGAGGACCTTCAGGAGACTC
**********************************************.((((((((.((((((.((((((..((((((((.((((.(((...)))..))))))))))))..)))))).))))))))))))))....************************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total |
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Generated: 04/30/2015 at 05:46 PM