ID:rno-mir-539 |
Coordinate:chr6:133877832-133877907 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
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| -38.1 | -37.2 | -37.2 |
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CTCCCAAGAGTGACCGACGGATGCTGGCATTCCTGCTGTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTTGCTCTTTTGGATGAATCATACAAGGGTAATTTCTTTTCGAGTATCAAATACTGCCCTGGCGGACTTCCTGGATGACAAGATGGTTGTGTAAAGG
*******************************************.(((((.((((((((((((((((((((((((.((((.((..(((...)))..)).)))))))))))))))))))))))))))).)))))...***************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528819 10dpp_testes |
GSM1528818 Adult_testes_Mili_IP |
GSM1528817 Adult_testes |
|---|---|---|---|---|---|---|---|---|
| ..................................................................................................CATACAAGGGTAATTTCTTTTC........................................................ | 22 | 0 | 1 | 66.00 | 66 | 66 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGTT............................................................................................... | 23 | 0 | 1 | 55.00 | 55 | 55 | 0 | 0 |
| .................................................................................................TCATACAAGGGTAATTTCTTTTC........................................................ | 23 | 0 | 1 | 40.00 | 40 | 40 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCGT...................................................... | 23 | 1 | 1 | 37.00 | 37 | 37 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTCT....................................................... | 23 | 1 | 1 | 29.00 | 29 | 29 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTCA....................................................... | 23 | 1 | 1 | 26.00 | 26 | 26 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGT................................................................................................ | 22 | 0 | 1 | 23.00 | 23 | 21 | 2 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGTTT.............................................................................................. | 24 | 0 | 1 | 21.00 | 21 | 21 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCG....................................................... | 22 | 0 | 1 | 18.00 | 18 | 16 | 0 | 2 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCGA...................................................... | 23 | 0 | 1 | 13.00 | 13 | 13 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGTCG.............................................................................................. | 24 | 2 | 1 | 12.00 | 12 | 0 | 12 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTT......................................................... | 21 | 0 | 1 | 10.00 | 10 | 10 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTCG................................................................................................ | 22 | 2 | 2 | 10.00 | 20 | 0 | 20 | 0 |
| ...........................................................GAGAAATTATCCTTGGTGTGT................................................................................................ | 21 | 0 | 1 | 8.00 | 8 | 8 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGTTCG............................................................................................. | 25 | 1 | 1 | 8.00 | 8 | 0 | 8 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCA....................................................... | 22 | 1 | 1 | 8.00 | 8 | 8 | 0 | 0 |
| .................................................................................................TCATACAAGGGTAATTTCTTTTCT....................................................... | 24 | 1 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| .................................................................................................TCATACAAGGGTAATTTCTTTTCA....................................................... | 24 | 1 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTG................................................................................................. | 21 | 0 | 1 | 6.00 | 6 | 1 | 5 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTC........................................................ | 21 | 0 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCGTTT.................................................... | 25 | 2 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGTTA.............................................................................................. | 24 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ..................................................................................................CATACAAGGGGAATTTCTTTTC........................................................ | 22 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCGAT..................................................... | 24 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCT....................................................... | 22 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ...........................................................GAGAAATTATCCTTGGTGTGTT............................................................................................... | 22 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .................................................................................................TCATACAAGGGTAATTTCTTTT......................................................... | 22 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ...................................................................................................ATACAAGGGGAATTTCTTTTCG....................................................... | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCGTAT.................................................... | 25 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTCAA...................................................... | 24 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...........................................................GAGAAATTATCCTTGGTGTGTTT.............................................................................................. | 23 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................................................ACATACAAGGGTAATTTCTTTTC........................................................ | 23 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTCG....................................................... | 23 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCGTT..................................................... | 24 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCGTAA.................................................... | 25 | 3 | 3 | 1.33 | 4 | 4 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGCT............................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................................................ATCATACAAGGGTAATTTCTTT.......................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGAAATTTCTTTTCGT...................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCGAAA.................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGACATTATCCTTGGTGTGT................................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGAGTT............................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTG................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGTA............................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGA................................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTCTT............................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTCATTTCTTTTCGAT..................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGGAATTTCTTTTCGT...................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTATTTTCTTTTCGT...................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CGTACAAGGGTAATTTCTTTTC........................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTCGA...................................................... | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................GAGAAATTATCCTTGGTGTG................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................................................TCATACAAGGGTATTTTCTTTTC........................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATACTTGGTGTGTTCG............................................................................................. | 25 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ..........................................................GGAGCAATTATCCTTGGTGTGT................................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAACTTCTTTT......................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTA......................................................... | 20 | 1 | 2 | 1.00 | 2 | 2 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGTTTT............................................................................................. | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ......................................................................................................CAAGGGTAATTTCTTTTC........................................................ | 18 | 0 | 2 | 1.00 | 2 | 2 | 0 | 0 |
| .................................................................................................ACATACAAGGGTAATTTCTTTTCA....................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATCCAAGGGTAATTTCTTTTC........................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ....................................................................................................TACAAGGGTAATTTCTTTTCGAGA.................................................... | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGAGTAATTTCTTTTCGA...................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................................................ATCATACAAGGGTAATTTCTTTTCT....................................................... | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................................................TCATACAAGGGTAATTTCTTTTCAT...................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATCATACAAGGGTAATTTCTTT.......................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGCTAATTTCTTTTC........................................................ | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTAT....................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGAAATTTCTTTTC........................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTTAA...................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATCCAAGGGTAATTTCTTTTCA....................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTTT....................................................... | 23 | 2 | 2 | 1.00 | 2 | 2 | 0 | 0 |
| .................................................................................................TCATACAAGGGTACTTTCTTTTC........................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTT......................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCATGGTGTGT................................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGTTTAAT........................................................................................... | 27 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTTTTCTA...................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATCTCTTTTCGT...................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTACCCTTGGTGTGT................................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ..................................................................................................CATACAAGGGCAATTTCTTTTC........................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGCTGTGTT............................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..............................................................AAATTATCCTTGGTGTGT................................................................................................ | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTACTTTTCG....................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGTAATTTCTTTTGT....................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTGATTTCTTTTCG....................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................GAGAAATTATCCTTGGTGTGTAT.............................................................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGTACTTTCTTTTC........................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGT.................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| .................................................................................................TCATACCAGGGTAATTTCTTTTC........................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTAATTTCTCTTCGT...................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................ATTATCCTTGGTGTGT................................................................................................ | 16 | 0 | 3 | 0.67 | 2 | 2 | 0 | 0 |
| ..........................................................GGAGAAATTATCCCTGGTGTGTCG.............................................................................................. | 24 | 3 | 3 | 0.67 | 2 | 0 | 2 | 0 |
| ..................................................................................................TATACAAGGGTAATTTCTTTTCT....................................................... | 23 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGACG.............................................................................................. | 24 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 |
| .................................................................................................TCATACAAGGGTAATTTCATTTCA....................................................... | 24 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ..........................................................GGAGAAATTATCCTTGGTGTGCCG.............................................................................................. | 24 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 |
| ...................................................................................................ATACAAGGGTCATTTCTTTTCGT...................................................... | 23 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ...............................................................AATTATCCTTGGTGTGT................................................................................................ | 17 | 0 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .................................................................................................TCATACAAGGGCACTTTCTTTTC........................................................ | 23 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATACAAGGGTTATTTCTTTTCA....................................................... | 22 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGTGATTTCTTTTC........................................................ | 22 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| .................................................................................................TCATACAAGGCTAATTTCTTTTCA....................................................... | 24 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 |
| ..................................................................................................CATACAAGGGGAATTTCTTTTA........................................................ | 22 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 |
| ...................................................................................................AGGCAAGGGTAATTTCTTTTC........................................................ | 21 | 2 | 7 | 0.14 | 1 | 1 | 0 | 0 |
| ...................................................................................................ATCAAAGGGTAATTTCTTTTCGT...................................................... | 23 | 3 | 8 | 0.13 | 1 | 1 | 0 | 0 |
| ..............................................................................................TTCTCATACAAGGGTAATTTCTT........................................................... | 23 | 3 | 12 | 0.08 | 1 | 0 | 0 | 1 |
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GAGGGTTCTCACTGGCTGCCTACGACCGTAAGGACGACACGATGACAAAGTATGAACTCCTCTTTAATAGGAACCACACAAACGAGAAAACCTACTTAGTATGTTCCCATTAAAGAAAAGCTCATAGTTTATGACGGGACCGCCTGAAGGACCTACTGTTCTACCAACACATTTCC
*****************************************.(((((.((((((((((((((((((((((((.((((.((..(((...)))..)).)))))))))))))))))))))))))))).)))))...******************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total |
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Generated: 04/30/2015 at 05:48 PM