ID:

rno-mir-501

 Coordinate:

chrX:16117874-16117957 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.4 -34.1 -34.1

Sense Strand Reads

TATATACAGAACCACACAAACATGGTACAAGGGCCTGGGCCTTCTGCTCTGCTCGTCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTAAGCCTGGTCTGCATGTGAGGACAGGAGGTCTGTGCATTGTGTGTCATCCGTTT
************************************************..(((...(((((((((..(((((.(((.(((((....(((.........)))...)))))))))))))..)))))).)))..)))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
....................................................................................................AATGCACCCGGGCAAGGATTTGG............................................................. 23 0 1 181.00 181 178 2 1
....................................................................................................AATGCACCCGGGCAAGGATTTGGT............................................................ 24 1 1 114.00 114 112 0 2
....................................................................................................AATGCACCCGGGCAAGGATTTGT............................................................. 23 1 1 70.00 70 63 5 2
....................................................................................................AATGCACCCGGGCAAGGATTTGGA............................................................ 24 1 1 33.00 33 33 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATGC............................................................................................... 26 0 1 31.00 31 31 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATGCT.............................................................................................. 27 0 1 22.00 22 22 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAAT................................................................................................. 24 0 1 22.00 22 22 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTG.............................................................. 22 0 1 19.00 19 19 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATGT............................................................................................... 26 1 1 19.00 19 10 9 0
....................................................................................................AATGCACCCGGGCAAGGATTTGA............................................................. 23 1 1 18.00 18 18 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATG................................................................................................ 25 0 1 17.00 17 17 0 0
....................................................................................................AATGCACCCGGGCAAGGATTT............................................................... 21 0 1 10.00 10 9 0 1
......................................................................................................TGCACCCGGGCAAGGATTTGG............................................................. 21 0 1 8.00 8 8 0 0
.....................................................................................................ATGCACCCGGGCAAGGATTTGG............................................................. 22 0 1 7.00 7 7 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTGGTCG.......................................................... 26 3 1 6.00 6 0 6 0
...............................................................AATCCTTTGTCCCTGGGTGAAA................................................................................................... 22 0 1 6.00 6 6 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTTA............................................................. 23 2 1 5.00 5 5 0 0
...................................................................................................AAATGCACCCGGGCAAGGATTTGG............................................................. 24 1 1 5.00 5 2 0 3
....................................................................................................AATGCACCCGGGCCAGGATTTGGT............................................................ 24 2 1 5.00 5 5 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTT.............................................................. 22 1 1 5.00 5 4 0 1
...............................................................AATCCTTTGTCCCTGGGTGA..................................................................................................... 20 0 1 5.00 5 1 4 0
...................................................................................................AAATGCACCCGGGCAAGGATTTGGA............................................................ 25 2 1 4.00 4 2 0 2
....................................................................................................AATGCACCCGGGTAAGGATTTGGT............................................................ 24 2 1 4.00 4 4 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAGTA................................................................................................. 24 3 1 4.00 4 4 0 0
...............................................................AATCCTTTGTCCCTGGGTGAA.................................................................................................... 21 0 1 4.00 4 3 0 1
...............................................................AATCCTTTGTCCCTGGGTGAAAATT................................................................................................ 25 1 1 3.00 3 3 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTGGTT........................................................... 25 2 1 3.00 3 3 0 0
.....................................................................................................ATGCACCCGGGCAAGGATTTGGT............................................................ 23 1 1 3.00 3 3 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATGA............................................................................................... 26 1 1 3.00 3 3 0 0
.....................................................................................................ATGCACCCGGGCAAGGATTTGGA............................................................ 23 1 1 3.00 3 3 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTGTT............................................................ 24 2 1 3.00 3 3 0 0
....................................................................................................AATGCACCCGGGCAAGCATTTGT............................................................. 23 2 1 2.00 2 2 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTGGTAT.......................................................... 26 3 1 2.00 2 2 0 0
................................................................ATCCTTTGTCCCTGGGTGAAAATGCT.............................................................................................. 26 0 1 2.00 2 1 1 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATGCTA............................................................................................. 28 0 1 2.00 2 2 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTGGAA........................................................... 25 2 1 2.00 2 2 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTAA............................................................. 23 2 1 2.00 2 2 0 0
..................................................................................................GCAATGCACCCGGGCAAGGATTTGG............................................................. 25 0 1 2.00 2 2 0 0
....................................................................................................AATGCACCCGGGCAAGGATT................................................................ 20 0 1 2.00 2 2 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTTG............................................................. 23 1 1 2.00 2 2 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTGGAT........................................................... 25 2 1 2.00 2 2 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTTT............................................................. 23 2 1 2.00 2 2 0 0
....................................................................................................AATGCACCCGGGCAAGGATTCGT............................................................. 23 2 1 1.00 1 1 0 0
....................................................................................................ACTGCACCCGGGCAAGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
.....................................................................................................ATGCACCCGGGCAAGGATTTGT............................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGAATTTGG............................................................. 23 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTACCTGGGTGAAAATGC............................................................................................... 26 1 1 1.00 1 1 0 0
..................................................................................................GCAATGCACCCGGGCAAGGATTT............................................................... 23 0 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCTAGGATTTGGTA........................................................... 25 3 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGCGCAAGGATTTGGT............................................................ 24 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGACAAGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGCGCAAGGATTTGA............................................................. 23 2 1 1.00 1 1 0 0
...................................................................................................AAATGCACCCGGGCAAGGATTTGGT............................................................ 25 2 1 1.00 1 0 0 1
....................................................................................................AATCCACCCGGGCAAGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AATACACCCGGGCCAGGATTTGGT............................................................ 24 3 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCCAGGATTTGGTT........................................................... 25 3 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCCAGGATTTGT............................................................. 23 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGACAAGGATTTGA............................................................. 23 2 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATGGTATTT.......................................................................................... 31 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGATTCGG............................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTGGTTT.......................................................... 26 3 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCCCTGGGTGAACATG................................................................................................ 25 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTAAA............................................................ 24 3 1 1.00 1 1 0 0
......................................................................................................TGCACCCGGGCAAGGATTTGGAAA.......................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................TATGCACCCGGGCAAGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
..............................................................AAATCCTTTGTCCCTGGGTGAAAATGC............................................................................................... 27 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCCCTGGGTGAACATGCTAT............................................................................................ 29 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGAGTTAG............................................................. 23 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGACTTGG............................................................. 23 1 1 1.00 1 1 0 0
...................................................................................................AAATGCACCCGGGCAAGGATTTG.............................................................. 23 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCGCTGGGTGAAATTGCT.............................................................................................. 27 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGCCAAGGATTTT.............................................................. 22 2 1 1.00 1 1 0 0
....................................................................................................AATGTACCCGGGCAAGGATTTGGT............................................................ 24 2 1 1.00 1 1 0 0
....................................................................................................AATGCCCCCGGGCAAGGATTTGT............................................................. 23 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTAG............................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AAATCACCCGGGCAAGGATTTG.............................................................. 22 2 1 1.00 1 0 0 1
....................................................................................................AATGCACCCGGGCCAGGATTTG.............................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGAT................................................................. 19 0 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGAATTGG............................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGACAAGGATTTGGA............................................................ 24 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTGTA............................................................ 24 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCAGGGCAAGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
...............................................................AATCCTTTCTCCCTGGGTGAAAATGT............................................................................................... 26 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCACGGATTT............................................................... 21 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTACCTGGGTGAAAATG................................................................................................ 25 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCCAGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
...................................................................................................AAATGCACCCGGGCAAGGATTTGAA............................................................ 25 3 1 1.00 1 0 0 1
...............................................................AATCCTTTGTCCCTGGGTGAAAATGTTT............................................................................................. 28 2 1 1.00 1 1 0 0
................................................................ATCCTTTGTCCCTGGGTGAAAATGC............................................................................................... 25 0 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATGCTATTT.......................................................................................... 31 0 1 1.00 1 1 0 0
................................................................ATCCTTTGTCCCTGGGTGAAAA.................................................................................................. 22 0 1 1.00 1 1 0 0
...............................................................AATACTTTGTCCCTGGGTGAAAAT................................................................................................. 24 1 1 1.00 1 1 0 0
................................................................ATCCTTTGTCCCTGGGTGAAAAA................................................................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AAAGCACCCGGGCAAGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGACTTG.............................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCTAGGATTTG.............................................................. 22 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCCCTCGGTGAGAAT................................................................................................. 24 2 1 1.00 1 1 0 0
....................................................................................................AATGCACACGGGCAAGGATTTGT............................................................. 23 2 1 1.00 1 1 0 0
................................................................ATCCTTTGTCCCTGGGTGAAACTT................................................................................................ 24 2 1 1.00 1 1 0 0
....................................................................................................ACTGCACCCGGGCAAGGATTTGT............................................................. 23 2 1 1.00 1 0 1 0
......................................................................................................TGCACCCGGGCAAGGATTTGGTA........................................................... 23 2 1 1.00 1 1 0 0
...............................................................AATCCTCTGTCCCTGGGTGAAAATG................................................................................................ 25 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCGCTGGGCGAAAAT................................................................................................. 24 2 1 1.00 1 1 0 0
....................................................................................................AATACACCCGGGCACGGATTTGGA............................................................ 24 3 1 1.00 1 1 0 0
................................................................................................TTGGAATGCACCCGGGCAAGGAT................................................................. 23 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCACGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAATTTTT............................................................................................. 28 3 1 1.00 1 1 0 0
....................................................................................................CATGCACCCGGGCAAGGATTTGG............................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AATACACCCGGGCAAGGATTTGGA............................................................ 24 2 1 1.00 1 1 0 0
.......................................................................................GCTATTTGTATGCACTGCACCCGGGCA...................................................................... 27 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAACGATTTGGT............................................................ 24 2 1 1.00 1 1 0 0
................................................................................................ATGCAATGCACCCGGGCAAGGATTTT.............................................................. 26 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCCCTGGGTGAACAT................................................................................................. 24 1 1 1.00 1 1 0 0
...............................................................AATCCTTTGTCCCTGGGTGAAAT.................................................................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCGAGGATTTT.............................................................. 22 2 1 1.00 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGATTTCT............................................................. 23 2 2 0.50 1 1 0 0
....................................................................................................AATGCACTCGGGCAAGGCTTTGGT............................................................ 24 3 4 0.25 1 1 0 0
....................................................................................................AATGCACCCGGGCAAGGATAAA.............................................................. 22 3 9 0.22 2 2 0 0
..............................................................AAATCCTTTTTCCCTGGGTGA..................................................................................................... 21 2 8 0.13 1 0 0 1
....................................................................................................AATGCACCCGGGCAAGCATTTCT............................................................. 23 3 9 0.11 1 1 0 0
....................................................................................................AATGCACCTGGGCAAGGTTTTT.............................................................. 22 3 20 0.05 1 1 0 0

Anti-sense strand reads

ATATATGTCTTGGTGTGTTTGTACCATGTTCCCGGACCCGGAAGACGAGACGAGCAGGAGAGATTAGGAAACAGGGACCCACTTTTACGATAAACATACGTTACGTGGGCCCGTTCCTAAACCCCTTCCATTCGGACCAGACGTACACTCCTGTCCTCCAGACACGTAACACACAGTAGGCAAA
**********************************************..(((...(((((((((..(((((.(((.(((((....(((.........)))...)))))))))))))..)))))).)))..)))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:51 PM