ID:

rno-mir-499

Coordinate:

chr3:151138862-151138926 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CAGGCTGCCACGCCCTCCTTGCTCCCTGCCGTCCCTGTCTTGGGTGGGCAGCTGTTAAGACTTGCAGTGATGTTTAGCTCCTCTCCATGTGAACATCACAGCAAGTCTGTGCTGCTGCCTGCCCCCATGCTGCCTGGGTAGGGCTCAGAGAAGGGGGAGCCATGG
***************************************..(((((((((((.((..((((((((.((((((((((.............)))))))))).))))))))..)).)))))))))))....*************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528817
Adult_testes
GSM1528818
Adult_testes_Mili_IP
......................................................TTAAGACTTGCAGTGATGTTTA......................................................................................... 22 0 1 354.00 354 344 9 1
......................................................TTAAGACTTGCAGTGATGTTT.......................................................................................... 21 0 1 311.00 311 255 56 0
......................................................TTAAGACTTGCAGTGATGTTTAGC....................................................................................... 24 0 1 141.00 141 139 2 0
......................................................TTAAGACTTGCAGTGATGTTTAG........................................................................................ 23 0 1 140.00 140 136 4 0
......................................................TTAAGACTTGCAGTGATGTTTAA........................................................................................ 23 1 1 120.00 120 119 1 0
.......................................................TAAGACTTGCAGTGATGTTTAGC....................................................................................... 23 0 1 80.00 80 79 1 0
......................................................TTAAGACTTGCAGTGATGTTTAT........................................................................................ 23 1 1 54.00 54 52 2 0
......................................................TTAAGACTTGCAGTGATGTTTAGT....................................................................................... 24 1 1 38.00 38 38 0 0
.......................................................TAAGACTTGCAGTGATGTTTAG........................................................................................ 22 0 1 24.00 24 22 2 0
......................................................TTAAGACTTGCAGTGATGTTTAGCT...................................................................................... 25 0 1 21.00 21 21 0 0
.......................................................TAAGACTTGCAGTGATGTTTA......................................................................................... 21 0 1 16.00 16 14 2 0
.......................................................TAAGACTTGCAGTGATGTTT.......................................................................................... 20 0 1 12.00 12 11 1 0
......................................................TTAAGACTTGCAGTGATGTTTAAA....................................................................................... 24 2 1 10.00 10 9 1 0
.......................................................TAAGACTTGCAGTGATGTTTAGCT...................................................................................... 24 0 1 10.00 10 9 1 0
.....................................................ATTAAGACTTGCAGTGATGTTTA......................................................................................... 23 1 1 9.00 9 9 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCTT................................................... 23 1 1 7.00 7 7 0 0
......................................................TTAAGACTTGCAGTGATGTT........................................................................................... 20 0 1 7.00 7 6 1 0
.......................................................TAAGACTTGCAGTGATGTTTAGCA...................................................................................... 24 1 1 7.00 7 6 1 0
......................................................TTAAGACTTGCAGTGATGTTTC......................................................................................... 22 1 1 7.00 7 7 0 0
..........................................................................................GAACATCACAGCAAGTCTGTGCTAA.................................................. 25 2 1 7.00 7 7 0 0
......................................................TTAAGACTTGCAGTGATGTTTAAT....................................................................................... 24 2 1 7.00 7 7 0 0
......................................................TTACGACTTGCAGTGATGTTTA......................................................................................... 22 1 1 6.00 6 6 0 0
.....................................................ATTAAGACTTGCAGTGATGTTT.......................................................................................... 22 1 1 5.00 5 3 2 0
.......................................................TAAGACTTGCAGTGATGTTTAGT....................................................................................... 23 1 1 5.00 5 5 0 0
.......................................................TAAGACTTGCAGTGATGTTTAGA....................................................................................... 23 1 1 5.00 5 5 0 0
..........................................................................................GAACATCACAGCAAGTCTGTGCAA................................................... 24 2 1 4.00 4 4 0 0
......................................................TTAAGACTTGCAGTGATGTTTT......................................................................................... 22 1 1 4.00 4 4 0 0
......................................................TTACGACTTGCAGTGATGTTTAGC....................................................................................... 24 1 1 4.00 4 4 0 0
..........................................................................................GAACATCACAGCAAGTCTGTGCT.................................................... 23 0 1 4.00 4 4 0 0
......................................................TTAAGACTTGCAGTGATGTTTGG........................................................................................ 23 1 1 4.00 4 4 0 0
..........................................................................................GAACATCACAGCAAGTCTGTGCTT................................................... 24 1 1 4.00 4 4 0 0
......................................................TTAAGACTTGCAGTGATGTTTAC........................................................................................ 23 1 1 4.00 4 4 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCTAAA................................................. 25 3 1 4.00 4 4 0 0
......................................................TTAAGACTTGCAGTGATGTTTAGA....................................................................................... 24 1 1 4.00 4 4 0 0
.....................................................ATTAAGACTTGCAGTGATGTTTAG........................................................................................ 24 1 1 3.00 3 3 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCAA................................................... 23 2 1 3.00 3 3 0 0
.....................................................ATTAAGACTTGCAGTGATGTTTT......................................................................................... 23 2 1 3.00 3 3 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCTAT.................................................. 24 2 1 3.00 3 3 0 0
......................................................TTACGACTTGCAGTGATGTTTAG........................................................................................ 23 1 1 3.00 3 3 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCTA................................................... 23 1 1 3.00 3 3 0 0
......................................................TTAAGACTTGCAGTGATGT............................................................................................ 19 0 1 3.00 3 2 1 0
.......................................................TAAGACTTGCAGTGATGTTTAGCTT..................................................................................... 25 1 1 2.00 2 2 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCTTT.................................................. 24 2 1 2.00 2 2 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCAG................................................... 23 1 1 2.00 2 2 0 0
......................................................TTAAGACTTGCCGTGATGTTT.......................................................................................... 21 1 1 2.00 2 2 0 0
.....................................................ATTAAGACTTGCAGTGATGTTTAGCT...................................................................................... 26 1 1 2.00 2 2 0 0
......................................................TTAAGACTTGCAGTGATGTTTAGCTCC.................................................................................... 27 0 1 2.00 2 2 0 0
..........................................................................................GAACATCACAGCAAGTCTGTGCTAT.................................................. 25 2 1 2.00 2 2 0 0
........................................................AAGACTTGCAGTGATGTTTAGCT...................................................................................... 23 0 1 2.00 2 2 0 0
......................................................TTCCGACTTGCAGTGATGTTTA......................................................................................... 22 2 1 2.00 2 2 0 0
......................................................TTAAGACTTGCAGCGATGTTT.......................................................................................... 21 1 1 2.00 2 1 1 0
..........................................................................................GAACATCACAGCAAGTCTGTGCAT................................................... 24 2 1 2.00 2 2 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCTAA.................................................. 24 2 1 2.00 2 2 0 0
......................................................TTAAGACTTGCAGCGATGTTTAGC....................................................................................... 24 1 1 1.00 1 1 0 0
........................................................AAGACTTGCAGTGATGTTTAG........................................................................................ 21 0 1 1.00 1 1 0 0
........................................................AAGACTTGCAGTGATGTTTAGC....................................................................................... 22 0 1 1.00 1 1 0 0
......................................................TTACGACTTGCAGTGATGTTTAGT....................................................................................... 24 2 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAGCG...................................................................................... 24 1 1 1.00 1 1 0 0
......................................................TTAAGAATTGCAGTGATGTTTAA........................................................................................ 23 2 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGAGATGTTTAGT....................................................................................... 24 2 1 1.00 1 1 0 0
......................................................TTGCGACTTGCCGTGATGTTTA......................................................................................... 22 3 1 1.00 1 1 0 0
.......................................................TAGGACTTGCAGTGATGTTTAGA....................................................................................... 23 2 1 1.00 1 1 0 0
......................................................TTAAGACTTGCCGTGATGTTTAGC....................................................................................... 24 1 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATCTTTAGC....................................................................................... 23 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTAATGTTT.......................................................................................... 21 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGTAGTGATGTTTAG........................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAGCTCT.................................................................................... 26 1 1 1.00 1 1 0 0
......................................................TTAAGACTAGCAGTGATGTTT.......................................................................................... 21 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGAGATGTTTAA........................................................................................ 23 2 2 1.00 2 2 0 0
......................................................TTCAGACTTGCAGTGATGTTT.......................................................................................... 21 1 1 1.00 1 1 0 0
.......................................................TACGACTTGCAGTGATGTTTAG........................................................................................ 22 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCGGTGATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGCGATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAGCTCCT................................................................................... 27 0 1 1.00 1 1 0 0
.......................................................TACGACTTGCAGTGATGTTTAGC....................................................................................... 23 1 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAA........................................................................................ 22 1 1 1.00 1 1 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCT.................................................... 22 0 1 1.00 1 1 0 0
......................................................TAAAGACTTGCAGTGATGTTT.......................................................................................... 21 1 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAGTT...................................................................................... 24 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGAAGTGATGTTTAGC....................................................................................... 24 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTTATGTTT.......................................................................................... 21 1 1 1.00 1 0 1 0
.......................................................TAAGACTCGCAGTGATGTTTAGTT...................................................................................... 24 2 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTCGC....................................................................................... 23 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGTAGTGATGTTT.......................................................................................... 21 1 1 1.00 1 1 0 0
......................................................TTACGACTTGCAGTCATGTTTA......................................................................................... 22 2 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTACCT...................................................................................... 24 1 1 1.00 1 1 0 0
..........................................................................................GAACATCACAGCAAGTCTGTGT..................................................... 22 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGATGTTTCG........................................................................................ 23 1 1 1.00 1 1 0 0
......................................................TTTCGACTTGCAGTGATGTTTAGC....................................................................................... 24 2 1 1.00 1 1 0 0
......................................................TTAAGACTTACAGTGATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTAATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTAATGTTTAGC....................................................................................... 23 1 1 1.00 1 1 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCTTA.................................................. 24 2 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGAGATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGGGATGTTTAC........................................................................................ 23 2 1 1.00 1 1 0 0
......................................................TTAAGATTTGCAGTGATGTTT.......................................................................................... 21 1 2 1.00 2 2 0 0
......................................................CTAAGACTTGCAGTGATGTTTAG........................................................................................ 23 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGATGTTTTGT....................................................................................... 24 2 1 1.00 1 1 0 0
......................................................TTAAGACTTGCCGTGATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
..........................................................................................GAACATCACAGCACGTCTGTGCAT................................................... 24 3 1 1.00 1 1 0 0
......................................................TTAAGACTCGCAGTGATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGATGTTTTGCT...................................................................................... 25 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTTATGTTTAGC....................................................................................... 24 1 1 1.00 1 0 1 0
......................................................TTAAGACTTGCAGTGATGGTTA......................................................................................... 22 1 1 1.00 1 1 0 0
......................................................TTACGACTTGCAGTGATGTTT.......................................................................................... 21 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGATGTTTAGTT...................................................................................... 25 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGGAGTGATGTTTAGC....................................................................................... 24 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTAATGTTTACC....................................................................................... 24 2 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGGGATGTTTA......................................................................................... 21 1 1 1.00 1 1 0 0
..........................................................................................GAACATCACAGCAAGTCTGTGAT.................................................... 23 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGATGTTTATA....................................................................................... 24 2 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGACGTTTATA....................................................................................... 24 3 1 1.00 1 1 0 0
......................................................TTAAGAATTGCAGTGATGTTT.......................................................................................... 21 1 1 1.00 1 1 0 0
.......................................................TAGGACTTGCAGTGATGTTTAGC....................................................................................... 23 1 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAGCTCC.................................................................................... 26 0 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAAT....................................................................................... 23 2 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGACGTTTAG........................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAT........................................................................................ 22 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGAGGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
...........................................................................................AACATCACAGCAAGTCTGTGCTAG.................................................. 24 2 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGAGATGTTTAGC....................................................................................... 24 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGTAGTGATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGCAGTGATGTTTCGT....................................................................................... 24 2 1 1.00 1 1 0 0
......................................................ATAAGACTTGCAGTGATGTTTAGC....................................................................................... 24 1 1 1.00 1 1 0 0
......................................................TTAAGACTTGAAGTGATGTTT.......................................................................................... 21 1 1 1.00 1 1 0 0
..........................................................................................GAACATCACAGCAAGTCTGTGCTTT.................................................. 25 2 1 1.00 1 1 0 0
...........................................................................................AACATCACCGCAAGTCTGTGCTAA.................................................. 24 3 1 1.00 1 1 0 0
......................................................TTAAGACTTGTAGTGATGTT........................................................................................... 20 1 1 1.00 1 1 0 0
......................................................TTACGACTTGCAGTGATGTTTAA........................................................................................ 23 2 1 1.00 1 1 0 0
......................................................ATAAGACTTGCAGTGATGTTTA......................................................................................... 22 1 1 1.00 1 1 0 0
.....................................................ATTAAGACTTGCAGTGATGTTTAA........................................................................................ 24 2 1 1.00 1 1 0 0
.......................................................TAAGACTTGCAGTCATGTTT.......................................................................................... 20 1 2 0.50 1 1 0 0
......................................................TTAAGACTTGCAGTGATGTTTTA........................................................................................ 23 2 2 0.50 1 1 0 0
......................................................TTTCGACTTGCAGTGATGTTTA......................................................................................... 22 2 2 0.50 1 1 0 0
......................................................TTAAGACTTGCTGTAATGTTTAG........................................................................................ 23 2 2 0.50 1 1 0 0
......................................................TTAGGACTTGCAGTGATGTTT.......................................................................................... 21 1 2 0.50 1 1 0 0
......................................................ATAAGACTTGCCGTGATGTTT.......................................................................................... 21 2 2 0.50 1 1 0 0
......................................................TTAAGACTTGCAGTGATGATTT......................................................................................... 22 2 2 0.50 1 1 0 0
.......................................................TAAGACTTGCAGTGATGTTTAAA....................................................................................... 23 2 2 0.50 1 1 0 0
......................................................TTAAGACTTGCAGTGA............................................................................................... 16 0 2 0.50 1 0 1 0
......................................................TTAAGACTTGCCGTAATGTTTAGT....................................................................................... 24 3 3 0.33 1 1 0 0
......................................................TTAAGACTTGCAGTGATGTAA.......................................................................................... 21 2 3 0.33 1 1 0 0
...........................................................ACTTGCAGTGATGTTT.......................................................................................... 16 0 3 0.33 1 0 1 0
...........................................................................................AACATCACAGAAAGTCTGTGCTAT.................................................. 24 3 5 0.20 1 1 0 0
......................................................TTAAGACTTGTAGTAATGTTT.......................................................................................... 21 2 5 0.20 1 1 0 0
......................................................TTTCGACTTGCAGTGATGTTT.......................................................................................... 21 2 10 0.10 1 1 0 0

Anti-sense strand reads

GTCCGACGGTGCGGGAGGAACGAGGGACGGCAGGGACAGAACCCACCCGTCGACAATTCTGAACGTCACTACAAATCGAGGAGAGGTACACTTGTAGTGTCGTTCAGACACGACGACGGACGGGGGTACGACGGACCCATCCCGAGTCTCTTCCCCCTCGGTACC
*************************************..(((((((((((.((..((((((((.((((((((((.............)))))))))).))))))))..)).)))))))))))....***************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:43 PM