ID:

rno-mir-496

 Coordinate:

chr6:133889283-133889361 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.5 -36.6 -36.6

Sense Strand Reads

CATCTTCAGGTCTGTGGCCTGAGACGTAGCAATGCAAGCTCTCGAAATCAAGTGTTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTCCTGGGAGAGCTTCTCCGACTGTGCAGGTTAGGGGAACAAAT
*************************************************.(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).))))))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
..................................................................................................AGTATTACATGGCCAATCTCC............................................................ 21 0 1 94.00 94 94 0
................................................................................................TGAGTATTACATGGCCAATCTCT............................................................ 23 1 1 41.00 41 41 0
................................................................................................TGAGTATTACATGGCCAATCTC............................................................. 22 0 1 22.00 22 22 0
................................................................................................TGAGTATTACATGGCCAATCTCA............................................................ 23 1 1 15.00 15 15 0
..................................................................................................AGTATTACATGGCCAATCTC............................................................. 20 0 1 15.00 15 15 0
................................................................................................TGAGTATTACATGGCCAATCT.............................................................. 21 0 1 10.00 10 10 0
..................................................................................................AGTATTACATGGCCAATCTCT............................................................ 21 1 1 9.00 9 9 0
..................................................................................................AGTATTACATGGCCAATCTCCAA.......................................................... 23 2 1 9.00 9 9 0
..................................................................................................AGTATTACATGGCCAATCTCCAAT......................................................... 24 2 1 8.00 8 8 0
..................................................................................................AGTATTACATGGCCAATCTCA............................................................ 21 1 1 6.00 6 6 0
..................................................................................................AGTATTACATGGCCAATCTCCTT.......................................................... 23 0 1 4.00 4 4 0
................................................................................................TGAGTATTACATGGCCAATCTT............................................................. 22 1 1 4.00 4 4 0
...................................................................................................GTATTACATGGCCAATCTCC............................................................ 20 0 1 3.00 3 3 0
..................................................................................................AGTATTACATGGCCAATCT.............................................................. 19 0 1 3.00 3 3 0
............................................................................................AAAATGAGTATTACATGGCCAATCTC............................................................. 26 2 1 3.00 3 3 0
..................................................................................................AGTATTACATGGCCAATCTCCT........................................................... 22 0 1 2.00 2 2 0
...............................................................................................ATGAGTATTACATGGCCAATCTCT............................................................ 24 1 1 2.00 2 2 0
...................................................................................................GTATTACATGGCCAATCTCCAT.......................................................... 22 1 1 2.00 2 2 0
..................................................................................................AGTATTACATGGCCAATCTCCAT.......................................................... 23 1 1 2.00 2 2 0
...............................................................................................ATGAGTATTACATGGCCAATCTCTT........................................................... 25 1 1 2.00 2 2 0
...................................................................................................GTATTACATGGCCAATCTCCA........................................................... 21 1 1 2.00 2 2 0
................................................................................................TGAGTATTACATGGCCAATCTCAT........................................................... 24 1 1 2.00 2 2 0
................................................................................................TGAGTATTACATGGCCAATCTCTT........................................................... 24 1 1 2.00 2 2 0
................................................................................................TGAGTATTACATGGCCAATCTCCTT.......................................................... 25 0 1 2.00 2 2 0
................................................................................................TGAGTATTACATGGCCAATCTTT............................................................ 23 2 1 2.00 2 2 0
..................................................................................................AGTATTACATGGCCAATCTCCA........................................................... 22 1 1 1.00 1 1 0
..................................................................................................AGTATTACATGGCCAATCTCCATT......................................................... 24 1 1 1.00 1 1 0
................................................................................................TGAGTCTTACATGGCCAATCTC............................................................. 22 1 1 1.00 1 1 0
.................................................................................................GAGTATTACATGGCCAATCT.............................................................. 20 0 1 1.00 1 1 0
.................................................................................................AAGTATTACATGGCCAATCTCC............................................................ 22 1 1 1.00 1 1 0
..................................................................................................AGTATTACCTGGCCCATCTCC............................................................ 21 2 1 1.00 1 1 0
................................................................................................CGAGTATTACATGGCCAATCTCT............................................................ 23 2 1 1.00 1 1 0
..................................................................................................AGTATTACATGGCCAATCTCTAT.......................................................... 23 2 1 1.00 1 1 0
................................................................................................TGAGTATTACATGGCCAATCTATT........................................................... 24 2 1 1.00 1 1 0
..................................................................................................AGTCTTACATGGCCAATCTCC............................................................ 21 1 1 1.00 1 1 0
................................................................................................TGCGTATTACATGGCCAATCTCT............................................................ 23 2 1 1.00 1 1 0
................................................................................................TGGGTATTACATGGCCAATCTCT............................................................ 23 2 1 1.00 1 1 0
....................................................................................................TATTACATGGCCAATCTCC............................................................ 19 0 1 1.00 1 1 0
..................................................................................................AGTATTACATGGCAAATCTCCATT......................................................... 24 2 1 1.00 1 1 0
..................................................................................................AGTATTAAATGGCCAATCTCC............................................................ 21 1 1 1.00 1 1 0
................................................................................................TGAGTATTACATGCCCAATCTCC............................................................ 23 1 1 1.00 1 1 0
..................................................................................................AGTATTACATGGCCAATCTCCTATT........................................................ 25 2 1 1.00 1 1 0
..................................................................................................AGTATTACATGGCCAATCTCCGA.......................................................... 23 2 1 1.00 1 1 0
................................................................................................TGAGTATTACATGGCCAATCTCCT........................................................... 24 0 1 1.00 1 1 0
.................................................................................................GAGTATTACATGGCCAATCTCT............................................................ 22 1 1 1.00 1 1 0
................................................................................................TGAGTATTACATGGCCAATCTCAA........................................................... 24 2 1 1.00 1 1 0
..................................................................................................AGTATTACCTGGCCAATCTCC............................................................ 21 1 1 1.00 1 1 0
..................................................................................................CGTATTACATGGCCAATCTCC............................................................ 21 1 1 1.00 1 1 0
...............................................................AGGTTGTCAATGGTGTGTTCATT............................................................................................. 23 1 1 1.00 1 1 0
..................................................................................................AGTATTACATGGCCAATCTCCAGTA........................................................ 25 3 1 1.00 1 1 0
................................................................GGTTGTCCATGGTGTGTTCATT............................................................................................. 22 0 1 1.00 1 0 1
................................................................................................TGAGTATTACATGGCCCATCTT............................................................. 22 2 1 1.00 1 1 0
................................................................................................TGAGTATTCCATGGCCAATCTCG............................................................ 23 2 1 1.00 1 1 0
..................................................................................................AGTATTACATGGCCCATCTCC............................................................ 21 1 1 1.00 1 1 0
..................................................................................................AGTATTACATGGCCAATCTCCAAA......................................................... 24 3 5 0.60 3 3 0
..................................................................................................AGTATTACATGGCCAATCTCAA........................................................... 22 2 2 0.50 1 1 0
..................................................................................................AGTATTACATGGCCAATCTCCATAT........................................................ 25 3 2 0.50 1 1 0
...................................................................................................GTATTACATGCCCAATCTCCAT.......................................................... 22 2 2 0.50 1 1 0
................................................................................................TGAGTATTACATGGCCAATCTTAA........................................................... 24 3 2 0.50 1 1 0
..................................................................................................AGTATTACATGGCCAATCTAA............................................................ 21 2 3 0.33 1 1 0
................................................................................................TGAGAATTACATGGCCAATCTCA............................................................ 23 2 3 0.33 1 1 0
................................................................................................TGCGTATTACATGACCAATCTCA............................................................ 23 3 4 0.25 1 1 0
...............................................................AGGTTGTCCATGGTGTGTCCAAA............................................................................................. 23 3 5 0.20 1 1 0
..................................................................................................AGTATTACATGGCTAATCTCT............................................................ 21 2 6 0.17 1 1 0
................................................................................................TGAGTATTACCTGGCCCATCTCT............................................................ 23 3 9 0.11 1 1 0

Anti-sense strand reads

GTAGAAGTCCAGACACCGGACTCTGCATCGTTACGTTCGAGAGCTTTAGTTCACAAGCTTACCTCCAACAGGTACCACACAAGTAAAATAAATACTACTCATAATGTACCGGTTAGAGGAAAGCCGTGATTTTAGAAGGACCCTCTCGAAGAGGCTGACACGTCCAATCCCCTTGTTTA
*********************************************.(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).))))))))).....************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:48 PM