ID:

rno-mir-495

 Coordinate:

chr6:133868288-133868367 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.6 -29.2 -29.2

Sense Strand Reads

TCCCTTAACACTCAGACACACTGCTGGAACAAGCAAGAGCTCACCCGTGGTACCTGAAAAGAAGTTGCCCATGTTATTTTTCGCTTTTATTTGTGACGAAACAAACATGGTGCACTTCTTTTTCGATATCAAAACTCACCTTGGAGAGCTCCCCGTGGAAGAGAGGGAGGGAAGAGTTCG
*********************************************..(((((...((((((((((.(((((((((.(((.((((........)))).)))...))))))).))))))))))))...))))).....******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
..................................................................................................AAACAAACATGGTGCACTTCTTT........................................................... 23 0 1 265.00 265 255 10 0
..................................................................................................AAACAAACATGGTGCACTTCTT............................................................ 22 0 1 136.00 136 135 1 0
...................................................................................................AACAAACATGGTGCACTTCTTT........................................................... 22 0 1 97.00 97 96 0 1
..................................................................................................AAACAAACATGGTGCACTTCTTA........................................................... 23 1 1 63.00 63 63 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTTT.......................................................... 24 0 1 48.00 48 44 4 0
..................................................................................................AAACAAACATGGTGCACTTCTTAA.......................................................... 24 2 1 43.00 43 43 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTTA.......................................................... 24 1 1 41.00 41 41 0 0
...................................................................................................AACAAACATGGTGCACTTCTTTA.......................................................... 23 1 1 39.00 39 33 6 0
...................................................................................................AACAAACATGGTGCACTTCTT............................................................ 21 0 1 19.00 19 19 0 0
...................................................................................................AACAAACATGGTGCACTTCTTTT.......................................................... 23 0 1 18.00 18 18 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTAT.......................................................... 24 1 1 16.00 16 16 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTTAA......................................................... 25 2 1 14.00 14 14 0 0
...................................................................................................AACAAACATGGTGCACTTCTTAA.......................................................... 23 2 1 12.00 12 12 0 0
...................................................................................................AACAAACATGGTGCACTTCTTTAA......................................................... 24 2 1 12.00 12 12 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTTAT......................................................... 25 1 1 11.00 11 11 0 0
............................................................GAAGTTGCCCATGTTATTTTTCG................................................................................................. 23 0 1 10.00 10 10 0 0
....................................................................................................ACAAACATGGTGCACTTCTTT........................................................... 21 0 1 10.00 10 10 0 0
...................................................................................................AACAAACATGGTGCACTTCTTAT.......................................................... 23 1 1 8.00 8 8 0 0
...................................................................................................AACAAACATGGTGCACTTCTTTTT......................................................... 24 0 1 7.00 7 7 0 0
.................................................................................................AAAACAAACATGGTGCACTTCTTT........................................................... 24 1 1 7.00 7 7 0 0
...................................................................................................AACAAACATGGTGCACTTCT............................................................. 20 0 1 6.00 6 6 0 0
...................................................................................................AACAAACATGGTGCACTTCTTTAT......................................................... 24 1 1 6.00 6 6 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTAG.......................................................... 24 2 1 6.00 6 6 0 0
...................................................................................................AACAAACATGGTGCACTTCTTA........................................................... 22 1 1 6.00 6 6 0 0
.................................................................................................AAAACAAACATGGTGCACTTCTT............................................................ 23 1 1 6.00 6 6 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTGA.......................................................... 24 2 1 5.00 5 5 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTCT.......................................................... 24 1 1 5.00 5 5 0 0
..................................................................................................AAACAAACATGGTGCACTTCT............................................................. 21 0 1 5.00 5 5 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTC........................................................... 23 1 1 4.00 4 4 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTAAA......................................................... 25 3 1 4.00 4 4 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTTTAT........................................................ 26 2 1 4.00 4 4 0 0
...................................................................................................AACAAACATGGTGCACTTCTTTGA......................................................... 24 2 1 3.00 3 3 0 0
....................................................................................................ACAAACATGGTGCACTTCTTTTT......................................................... 23 0 1 3.00 3 3 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTAAG......................................................... 25 3 1 3.00 3 3 0 0
.....................................................................................................CAAACATGGTGCACTTCTTT........................................................... 20 0 1 3.00 3 3 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTTTT......................................................... 25 0 1 3.00 3 3 0 0
..................................................................................................AAACAAACATGGTGCACTTCTAA........................................................... 23 2 1 3.00 3 3 0 0
..................................................................................................AAACAAACATGGTGCACTTC.............................................................. 20 0 1 2.00 2 2 0 0
..............................................................................................GTGGAAACAAACATGGTGCACTTCTTT........................................................... 27 2 1 2.00 2 0 0 2
.....................................................................................................CAAACATGGTGCACTTCTTTA.......................................................... 21 1 1 2.00 2 2 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTTTA......................................................... 25 1 1 2.00 2 2 0 0
..................................................................................................AAACAAACATGGCGCACTTCTT............................................................ 22 1 1 2.00 2 2 0 0
..................................................................................................AAACAAACATGGGGCACTTCTT............................................................ 22 1 1 2.00 2 2 0 0
............................................................GAAGTTGCCCATGTTATTTTTCGT................................................................................................ 24 1 1 2.00 2 2 0 0
..................................................................................................AAACAAACCTGGTGCACTTCTTT........................................................... 23 1 1 2.00 2 2 0 0
..................................................................................................AAACAAACATGGTGCACTTCTCT........................................................... 23 1 1 2.00 2 2 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTG........................................................... 23 1 1 2.00 2 2 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTTTAA........................................................ 26 2 1 2.00 2 2 0 0
....................................................................................................ACAAACATGGTGCACTTCTTTTTT........................................................ 24 1 1 2.00 2 2 0 0
...................................................................................................AACAAACATGGTGCACTTCTTAG.......................................................... 23 2 1 2.00 2 2 0 0
.................................................................................................AAAACAAACATGGTGCACTTCTTA........................................................... 24 2 1 2.00 2 2 0 0
..................................................................................................AAACAAACATGGTGAACTTCTT............................................................ 22 1 1 2.00 2 2 0 0
..................................................................................................AAACAAACAAGGTGCACTTCTTT........................................................... 23 1 1 2.00 2 2 0 0
....................................................................................................ACAAACATGGTGCACTTCTTTT.......................................................... 22 0 1 2.00 2 2 0 0
.................................................................................................AAAACAAACATGGTGCACTTCTTTA.......................................................... 25 2 2 1.50 3 3 0 0
..................................................................................................CAACAAACATGGTGCACTTCTTTTAT........................................................ 26 3 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGAGCACTTCTTA........................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTACACTTCTTTA.......................................................... 24 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGCGCACTTCTTTAT......................................................... 25 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTACACTTCTT............................................................ 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGAACTTCTTTT.......................................................... 24 1 1 1.00 1 1 0 0
.................................................................................................AAACCAAACATGGTGCACTTCTTT........................................................... 24 2 1 1.00 1 1 0 0
.................................................................................................AAGACAAACATGGTGCACTTCTTT........................................................... 24 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGCGCACTTCTTA........................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCACTTCTC............................................................ 22 1 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGCCCTTCTTTT.......................................................... 23 1 1 1.00 1 1 0 0
....................................................................................................ACAAACATGGTGCACTTCTTATTT........................................................ 24 2 1 1.00 1 1 0 0
............................................................GAAGTTGCCCATGCTATTTTTCG................................................................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................ACAAACATGGTGCACTTCTTGT.......................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGCACTTCATT........................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGAACTTCTTT........................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGCTGCACTTCTTT........................................................... 23 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTACACTTCTTT........................................................... 23 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGAACTTCTTTTT......................................................... 25 1 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGCACTTCTTCT.......................................................... 23 1 1 1.00 1 1 0 0
.................................................................................................AAAACAAACATGGAGCACTTCTTTT.......................................................... 25 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGAGCACTTCTTAT.......................................................... 24 2 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGCACTTCTTTTA......................................................... 24 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGCTGCACTTCTT............................................................ 22 1 1 1.00 1 1 0 0
..................................................................................................AAGCAAACATGGTGCACTTCTTTA.......................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................ACAAACATGGTGCACTTCTTAT.......................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCACTTCTG............................................................ 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATCGTGCACTTCTT............................................................ 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCACTTCCT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................ACAAACATGGCGCACTTCTTTT.......................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCACTCCTTT........................................................... 23 1 1 1.00 1 1 0 0
............................................................GAAGTTGCCCATGTTATTATTGG................................................................................................. 23 2 1 1.00 1 1 0 0
..................................................................................................AACCAAACATGGTGCACTTCTTT........................................................... 23 1 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGCACTTCA............................................................. 20 1 1 1.00 1 1 0 0
..................................................................................................AAACAAAAATGGTGCACTTCTT............................................................ 22 1 1 1.00 1 1 0 0
.................................................................................................AAAACAAACATGGTGCCCTTCTTT........................................................... 24 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGAACTTCTTT........................................................... 23 1 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGTACTTCTTTT.......................................................... 23 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGAACTTCTTTA.......................................................... 24 2 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGCACTTC.............................................................. 19 0 1 1.00 1 1 0 0
....................................................................................................ACAAACATGGTGCACTTCT............................................................. 19 0 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGCCCTTCTTT........................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATCGTGCACTTCTTAT.......................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................ACAAACATGGTGCACTTCTT............................................................ 20 0 1 1.00 1 1 0 0
..................................................................................................AAACAAACACGGTGCACTTCTTTT.......................................................... 24 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTAGA......................................................... 25 3 2 1.00 2 2 0 0
...................................................................................................AACAAACATGATGCACTTCTTT........................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................AGCAAACATGGTGCACTTCTTT........................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCAATTCGT............................................................ 22 2 1 1.00 1 1 0 0
............................................................GAAGTTGCCCATGTTATTTTT................................................................................................... 21 0 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGCGCACTTCT............................................................. 21 1 1 1.00 1 1 0 0
..................................................................................................AAACCAACATGGTGCACTTCTTT........................................................... 23 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGCGCACTTCTTTT.......................................................... 24 1 1 1.00 1 0 1 0
.................................................................................................AAAACAAACATGGTGCACTTCTTAT.......................................................... 25 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCACTTCTCA........................................................... 23 2 1 1.00 1 1 0 0
...................................................................................................AACCAACATGGTGCACTTCTTCT.......................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCACTTCTTAGT......................................................... 25 2 1 1.00 1 1 0 0
...................................................................................................AACAGACATGGTGCACTTCTTT........................................................... 22 1 1 1.00 1 1 0 0
....................................................................................................ACAAACATGGTGCACTTCTTTTG......................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................TTTGTGACGAAACAAACATGGTGCACTT............................................................... 28 0 1 1.00 1 1 0 0
...................................................................................................AACCAACATGGTGCACTTCTTTA.......................................................... 23 2 1 1.00 1 1 0 0
.................................................................................................TAAACAAACATGGTGCACTTCT............................................................. 22 1 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCAATTCTTA........................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................AAACAAACATGGTGCAATTCGTTT.......................................................... 24 2 1 1.00 1 1 0 0
...................................................................................................AACCAACATGGTGCACTTCTTT........................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................AACAAACATGGTGCACTTCTTAAA......................................................... 24 3 2 0.50 1 1 0 0
....................................................................................................ACAAACATGGTGCCCTTCTTAT.......................................................... 22 2 2 0.50 1 1 0 0
...................................................................................................AACCAACATGGTGCACTTCTTTAA......................................................... 24 3 2 0.50 1 1 0 0
..................................................................................................AAACAAACCTGGTGCACTTCTC............................................................ 22 2 2 0.50 1 1 0 0
..................................................................................................AAACAAACATGGTGCAATTCATT........................................................... 23 2 2 0.50 1 1 0 0
....................................................................................................ACAATCATGGTGCACTTCTT............................................................ 20 1 2 0.50 1 1 0 0
...................................................................................................AACAAACCTGGTGCACTTCTTTA.......................................................... 23 2 2 0.50 1 1 0 0
...................................................................................................AACAAACGTGGTGCACTTCTTT........................................................... 22 1 2 0.50 1 1 0 0
...................................................................................................AACAAACATGGTGCACTCCT............................................................. 20 1 2 0.50 1 0 0 1
...................................................................................................AACAAACATGGTGCATTTCTTTA.......................................................... 23 2 2 0.50 1 1 0 0
...................................................................................................CACCAACATGGTGCACTTCTTT........................................................... 22 2 2 0.50 1 1 0 0
.................................................................................................AAAACAAACATGGGGCACTTCTT............................................................ 23 2 2 0.50 1 1 0 0
.................................................................................................AAAACAAACATGGTGCACTTCTTCA.......................................................... 25 3 4 0.50 2 2 0 0
..................................................................................................AAACAAACCTGGTGCACTTCTTAA.......................................................... 24 3 3 0.33 1 1 0 0
..................................................................................................AAACAACCATGGTGCACTTCTTAA.......................................................... 24 3 3 0.33 1 1 0 0
.....................................................................................................CAAACATGGGGCACTTCTTTA.......................................................... 21 2 3 0.33 1 1 0 0
...................................................................................................AACAAACATGGTGCACTTCTTTAAA........................................................ 25 3 3 0.33 1 1 0 0
..................................................................................................AAACAAACATGGTGCACTTCTAAA.......................................................... 24 3 4 0.25 1 1 0 0
..................................................................................................AAACAAACATGGCGCACTTCTCA........................................................... 23 3 4 0.25 1 1 0 0
..................................................................................................AAATAAACATGATGCACTTCTT............................................................ 22 2 4 0.25 1 1 0 0
...................................................................................................AACAAACATGGTGCCCTTCTTTAA......................................................... 24 3 5 0.20 1 1 0 0
...................................................................................................AACAAACATGGTGAACTTCTTC........................................................... 22 2 7 0.14 1 1 0 0
..................................................................................................AAACAAACATGGTGAACTTCTTAG.......................................................... 24 3 8 0.13 1 1 0 0
...............................................................................................TTTAAACAAACATGGTGCACTTC.............................................................. 23 3 9 0.11 1 1 0 0
..................................................................................................TAACAAACATGGTGAACTTCTTC........................................................... 23 3 14 0.07 1 1 0 0
..................................................................................................AAACAAAAATGGTGCACTTCTAA........................................................... 23 3 18 0.06 1 1 0 0
.........................................................................................................CATGGTGCACTTCTTA........................................................... 16 1 20 0.05 1 1 0 0

Anti-sense strand reads

AGGGAATTGTGAGTCTGTGTGACGACCTTGTTCGTTCTCGAGTGGGCACCATGGACTTTTCTTCAACGGGTACAATAAAAAGCGAAAATAAACACTGCTTTGTTTGTACCACGTGAAGAAAAAGCTATAGTTTTGAGTGGAACCTCTCGAGGGGCACCTTCTCTCCCTCCCTTCTCAAGC
********************************************..(((((...((((((((((.(((((((((.(((.((((........)))).)))...))))))).))))))))))))...))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:47 PM