ID:

rno-mir-493

 Coordinate:

chr6:133699509-133699592 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-54.5 -54.3

Sense Strand Reads

CAGTCCCTCACCTTCCTCACCTCCATCATCTTCGCTTCTGGGCTCATTCTGGCCTCCAGGGCCTTGTACATGGTAGGCTTTCATTCATTGTTTGCACATTCGGTGAAGGTCTACTGTGTGCCAGGCCCTGTGCCAGGCATCGTGTAGATGGACGTTGCCCTTGAGAGTCCACAACTCTGGGAGA
************************************************(((((...((((((((.((((((((((((((((((((...(((....)))...)))))))))))))))))))).)))))))).)))))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...............................................................TTGTACATGGTAGGCTTTCATT................................................................................................... 22 0 1 32.00 32 31 1
...............................................................TTGTACATGGTAGGCTTTCATTA.................................................................................................. 23 1 1 22.00 22 22 0
...............................................................TTGTACATGGTAGGCTTTCATTT.................................................................................................. 23 1 1 13.00 13 13 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGT.......................................................... 23 1 1 5.00 5 5 0
...............................................................TTGTACATGGTAGGCTTTCATTAA................................................................................................. 24 1 1 5.00 5 5 0
...............................................................TTGTACATGGTAGGCTTTCATTTT................................................................................................. 24 2 1 4.00 4 4 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGA.......................................................... 23 1 1 4.00 4 4 0
...............................................................TTGTACATGGTAGGCTTTCATTTA................................................................................................. 24 1 1 3.00 3 3 0
...............................................................TTGTACATGGTAGGCTTTCATTAT................................................................................................. 24 2 2 2.50 5 5 0
...............................................................TTGTACATGGTAGGCTTTCATTAG................................................................................................. 24 2 2 2.50 5 5 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGT........................................................... 22 1 1 2.00 2 2 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGG........................................................... 22 0 1 2.00 2 2 0
................................................................TGTACATGGTAGGCTTTCATTA.................................................................................................. 22 1 1 2.00 2 2 0
...............................................................TTGTACATGGTAGGCTTTCA..................................................................................................... 20 0 1 1.00 1 1 0
...............................................................TTGTACATGGTAGGCTTTCATTGA................................................................................................. 24 1 1 1.00 1 1 0
...............................................................TTGTACATGGTAGGCTTTCATAT.................................................................................................. 23 2 1 1.00 1 1 0
.............................................................TATTGTACATGGTAGGCTTTCAT.................................................................................................... 23 2 2 1.00 2 2 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGTT......................................................... 24 2 1 1.00 1 1 0
...............................................................TTGTACATGGTAGGCTTTCAT.................................................................................................... 21 0 1 1.00 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGAG......................................................... 24 2 1 1.00 1 1 0
...............................................................TTGTACATGGTAGGCTTTAATT................................................................................................... 22 1 1 1.00 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGAT......................................................... 24 2 1 1.00 1 1 0
...............................................................GTGTACATGGTAGGCTTTCATTG.................................................................................................. 23 2 1 1.00 1 1 0
...............................................................TTGTACATGGTAGGCTTTCATGA.................................................................................................. 23 2 1 1.00 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGA........................................................... 22 1 1 1.00 1 1 0
...............................................................TTGTACATGGTAGGCTTTTATT................................................................................................... 22 1 2 0.50 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGTTAT....................................................... 26 3 2 0.50 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGTTT........................................................ 25 3 2 0.50 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGAA......................................................... 24 2 3 0.33 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGAAT........................................................ 25 3 6 0.33 2 2 0
...............................................................TTGTACATGGTAGGCTTTCATTATAT............................................................................................... 26 3 4 0.25 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGTA......................................................... 24 2 5 0.20 1 1 0
.......................................................................................................TGAAGGTCTACTGTGTGCCAGGTAA........................................................ 25 3 7 0.14 1 1 0

Anti-sense strand reads

GTCAGGGAGTGGAAGGAGTGGAGGTAGTAGAAGCGAAGACCCGAGTAAGACCGGAGGTCCCGGAACATGTACCATCCGAAAGTAAGTAACAAACGTGTAAGCCACTTCCAGATGACACACGGTCCGGGACACGGTCCGTAGCACATCTACCTGCAACGGGAACTCTCAGGTGTTGAGACCCTCT
********************************************(((((...((((((((.((((((((((((((((((((...(((....)))...)))))))))))))))))))).)))))))).)))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:46 PM