ID:

rno-mir-490

 Coordinate:

chr4:63342943-63343026 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.4 -39.2 -39.2

Sense Strand Reads

CTGGTGAAGAGGAACGCCCCACACACTTTCTGAAGGAAGGCTGGCTGATTTGGAAAGTTCATTGTTCGACACCATGGATCTCCAGGTGGGTCACGTTTAGATATACACCAACCTGGAGGACTCCATGCTGTTGAGCTGTTCACGAGCAGCGGAACTTCTAAGCCCATCTCCCAGGAAGTAAGCT
***********************************.........(((.(((((((........((((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))))..))).)))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP
............................................................................................................CAACCTGGAGGACTCCATGCTGT..................................................... 23 0 1 25.00 25 25 0
............................................................................................................CAACCTGGAGGACTCCATGCTGTT.................................................... 24 0 1 11.00 11 11 0
............................................................................................................CAACCTGGAGGACTCCATGCTGTTT................................................... 25 1 1 9.00 9 9 0
............................................................................................................CAACCTGGAGGACTCCATGCTGTAT................................................... 25 2 1 8.00 8 8 0
............................................................................................................CAACCTGGAGGACTCCATGCTGAA.................................................... 24 2 1 7.00 7 7 0
............................................................................................................CAACCTGGAGGACTCCATGCTGTA.................................................... 24 1 1 6.00 6 6 0
.......................................................................CCATGGATCTCCAGGTGGGTCG........................................................................................... 22 1 1 5.00 5 0 5
............................................................................................................CAACCTGGAGGACTCCATGCTGTAA................................................... 25 2 1 5.00 5 5 0
............................................................................................................CAACCTGGAGGACTCCATGCTGTAAA.................................................. 26 2 1 4.00 4 4 0
............................................................................................................CAACCTGGAGGACTCCATGCTGA..................................................... 23 1 1 3.00 3 3 0
.......................................................................CCATGGATCTCCAGGTGGGTAA........................................................................................... 22 1 1 2.00 2 2 0
......................................................................ACCATGGATCTCCAGGTGGGTATA.......................................................................................... 24 3 1 2.00 2 2 0
.......................................................................CCATGGATCTCCAGGTGGGTAT........................................................................................... 22 2 1 2.00 2 2 0
............................................................................................................CAACCTGGAGGACTCCATGCTG...................................................... 22 0 1 2.00 2 2 0
......................................................................ACCATGGATCTCCAGGTGGGTAT........................................................................................... 23 2 1 2.00 2 2 0
.......................................................................CCATGGATCTCCAGGTGGGTAAA.......................................................................................... 23 2 2 1.50 3 3 0
............................................................................................................CAACCTGGAGGACTCCATGCTGTTTA.................................................. 26 1 1 1.00 1 1 0
.......................................................................CCATGGATCTCCAGGTGGGTTAT.......................................................................................... 23 2 1 1.00 1 1 0
...........................................................................................................CCAACCTGGAGGACTCCATGCTGA..................................................... 24 1 1 1.00 1 1 0
............................................................................................................CAACCTGGAGGACTCCATGCTGTAGA.................................................. 26 1 1 1.00 1 1 0
..........................................................................................................ACCAACCTGGAGGACTCCATGCTGT..................................................... 25 0 1 1.00 1 1 0
.............................................................................................................AACCTGGAGGACTCCATGCTGT..................................................... 22 0 1 1.00 1 1 0
............................................................................................................CAACCTGGAGGACTCCATGCGGT..................................................... 23 1 1 1.00 1 1 0
.............................................................................................................AACCTGGAGGACTCCATGCTGTC.................................................... 23 1 1 1.00 1 1 0
..........................................................................................................ACCAACCTGGAGGACTCCATGCT....................................................... 23 0 1 1.00 1 1 0
............................................................................................................CAACCTGGAGGACTCCATGCTGTTAT.................................................. 26 2 1 1.00 1 1 0
............................................................................................................CAACCTGGAGGACTCCCTGCTGTA.................................................... 24 2 1 1.00 1 1 0
...........................................................................................................CCAACCTGGAGGACTCCATGCTGT..................................................... 24 0 1 1.00 1 1 0
......................................................................ACCATGGATCTCCAGGTGGGTAAT.......................................................................................... 24 2 1 1.00 1 1 0
...........................................................................................................CCAACCTGGAGGACTCCATGCTG...................................................... 23 0 1 1.00 1 1 0
.......................................................................CCATGGATCTACAGGTGGGTCG........................................................................................... 22 2 1 1.00 1 0 1
............................................................................................................CAACCTGGAGGACTCCATTCTGT..................................................... 23 1 1 1.00 1 1 0
............................................................................................................CAACCGGGAGGACTCCATGCTGT..................................................... 23 1 1 1.00 1 1 0
............................................................................................................CAACCTGGAGGACTCCATGCTGC..................................................... 23 1 1 1.00 1 1 0
............................................................................................................CACACTGGAGGACTCCATGCTGT..................................................... 23 2 2 0.50 1 1 0
............................................................................................................CAACCTGGAGGACTCCATGCTGAGT................................................... 25 3 2 0.50 1 1 0
............................................................................................................CAACCTGGAGGACTCCATGCTGAAAA.................................................. 26 3 2 0.50 1 1 0
.......................................................................CCATGGATCTCCAGGTGGGTTAA.......................................................................................... 23 2 3 0.33 1 1 0
.......................................................................CCATGGATCTCCAGGTGGGTTT........................................................................................... 22 2 4 0.25 1 1 0
.......................................................................CCATGGATCTCCAGGTGGGTTTA.......................................................................................... 23 3 8 0.13 1 1 0

Anti-sense strand reads

GACCACTTCTCCTTGCGGGGTGTGTGAAAGACTTCCTTCCGACCGACTAAACCTTTCAAGTAACAAGCTGTGGTACCTAGAGGTCCACCCAGTGCAAATCTATATGTGGTTGGACCTCCTGAGGTACGACAACTCGACAAGTGCTCGTCGCCTTGAAGATTCGGGTAGAGGGTCCTTCATTCGA
***********************************.........(((.(((((((........((((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))))..))).)))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:44 PM