ID:

rno-mir-487b

 Coordinate:

chr6:133877124-133877205 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.6 -35.3 -35.1

Sense Strand Reads

GACGTAGCACGTCTACCTGAGGCGGTGGCTTCCCTTTCCAGGCCGAGCTTTGGTACTTGGAGAGTGGTTATCCCTGTCCTCTTCGCTTCACTTATGCCGAATCGTACAGGGTCATCCACTTTTTCAGTATCAAGTGCACAGACTCTGCAGCCTGGCTTCCCGCGCCCGGATCCTGCCTCTGA
***********************************...((((....(((((((((((.(((((((((....((((((....(((((.........)).)))....))))))....))))))))).))))))))).))......))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...................................................................................................AATCGTACAGGGTCATCCACTTT............................................................ 23 0 1 201.00 201 200 1
...................................................................................................AATCGTACAGGGTCATCCACTT............................................................. 22 0 1 148.00 148 146 2
...................................................................................................AATCGTACAGGGTCATCCACTTA............................................................ 23 1 1 42.00 42 42 0
....................................................................................................ATCGTACAGGGTCATCCACTTT............................................................ 22 0 1 27.00 27 27 0
...................................................................................................AATCGTACAGGGTCATCCACTTTT........................................................... 24 0 1 22.00 22 22 0
...................................................................................................AATCGTACAGGGTCATCCACTTTA........................................................... 24 1 1 22.00 22 22 0
...................................................................................................AATCGTACAGGGTCATCCACTTAA........................................................... 24 2 1 18.00 18 18 0
...................................................................................................AATCGTACAGGGTCATCCACT.............................................................. 21 0 1 15.00 15 12 3
...................................................................................................AATCGTACAGGGTCATCCACTTAAA.......................................................... 25 3 1 11.00 11 11 0
...................................................................................................AATCGTACAGGGTCATCCACTTTTT.......................................................... 25 0 1 10.00 10 10 0
...................................................................................................AATCGTACAGGGTCATCCACTTAT........................................................... 24 1 1 9.00 9 9 0
....................................................................................................ATCGTACAGGGTCATCCACTT............................................................. 21 0 1 8.00 8 7 1
....................................................................................................ATCGTACAGGGTCATCCACTTTTT.......................................................... 24 0 1 6.00 6 6 0
....................................................................................................ATCGTACAGGGTCATCCACTTTT........................................................... 23 0 1 6.00 6 6 0
....................................................................................................ATCGTACAGGGTCATCCACTTA............................................................ 22 1 1 6.00 6 6 0
....................................................................................................ATCGTACAGGGTCATCCACTTTA........................................................... 23 1 1 6.00 6 6 0
...................................................................................................AATCGTACAGGGTCATCCACTTTAA.......................................................... 25 2 1 6.00 6 6 0
....................................................................................................ATCGTACAGGGTCATCCACTTTAA.......................................................... 24 2 1 5.00 5 5 0
...................................................................................................AATCGTACAGGGGCATCCACTTT............................................................ 23 1 1 4.00 4 4 0
...................................................................................................AATCGTACAGGGTCATCCACTTC............................................................ 23 1 1 4.00 4 4 0
....................................................................................................ATCGTACAGGGTCATCCACTTTAC.......................................................... 24 2 1 3.00 3 3 0
..................................................................................................AAATCGTACAGGGTCATCCACTTA............................................................ 24 2 1 3.00 3 3 0
..................................................................................................AAATCGTACAGGGTCATCCACTTT............................................................ 24 1 1 3.00 3 3 0
...................................................................................................AATCGTACAGGGTCATCCACTA............................................................. 22 1 1 3.00 3 3 0
...................................................................................................AATCGTACAGGGTCATCCACTTTAT.......................................................... 25 1 1 3.00 3 3 0
...................................................................................................AATCGTACAGGGCCATCCACTTT............................................................ 23 1 1 3.00 3 3 0
...................................................................................................AATCGTACAGAGTCATCCACTTT............................................................ 23 1 1 2.00 2 2 0
...................................................................................................AATCGTACAGGGTCATCCACTCT............................................................ 23 1 1 2.00 2 2 0
.....................................................................................................TCGTACAGGGTCATCCACTTTTT.......................................................... 23 0 1 2.00 2 2 0
..................................................................................................AAATCGTACAGGGTCATCCACTT............................................................. 23 1 1 2.00 2 2 0
...................................................................................................AATCGTACAGGGTCATCCCCTTT............................................................ 23 1 1 2.00 2 2 0
....................................................................................................ATCGTACAGGGTCATCCACTTTTA.......................................................... 24 1 1 2.00 2 2 0
...................................................................................................AATCGTACAGGGTCATCTACTTT............................................................ 23 1 1 2.00 2 2 0
...................................................................................................AATCGTACAGGGCCATCCACTT............................................................. 22 1 1 2.00 2 2 0
...................................................................................................CATCGTACCGGGTCATCCACTTT............................................................ 23 2 1 2.00 2 2 0
....................................................................................................ATCGTACAGGGTCATCCACTTTAT.......................................................... 24 1 1 2.00 2 2 0
...................................................................................................AATCGTACAGGGTCATCCAC............................................................... 20 0 1 2.00 2 2 0
...................................................................................................AATCGTACAGGGTCATCCACTAA............................................................ 23 2 1 2.00 2 2 0
.................................................................................................AAAATCGTACAGGGTCATCCACTTA............................................................ 25 3 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCCCTTA............................................................ 23 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTTTAAA......................................................... 26 3 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTTCAA.......................................................... 25 3 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTCAT........................................................... 24 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTTATCCACTTA............................................................ 23 2 1 1.00 1 1 0
..................................................................................................AAATCGTACAGGGTCATCCACT.............................................................. 22 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTAATCCACTTT............................................................ 23 1 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGACATCCACTTTTT.......................................................... 24 1 1 1.00 1 1 0
...................................................................................................ACTCGTACAGGGTCATCCACTTT............................................................ 23 1 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGTCATCCACTTTTTC......................................................... 25 0 1 1.00 1 1 0
.....................................................................................................TCGTACAGGGTCATCCACTTTTA.......................................................... 23 1 1 1.00 1 1 0
...................................................................................................AATAGTACAGGGTCATCCACTT............................................................. 22 1 1 1.00 1 1 0
...................................................................................................AATCGTAAAGGGTCATCCACTT............................................................. 22 1 1 1.00 1 1 0
....................................................................................................ATCGTACAGGATCATCCACTTA............................................................ 22 2 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGTCATCCACT.............................................................. 20 0 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTAT............................................................ 23 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGCGTCATCCACTT............................................................. 22 1 1 1.00 1 1 0
...................................................................................................TATCGTACAGGGTCATCCACTTTT........................................................... 24 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCCTCCACTTTT........................................................... 24 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTTCT........................................................... 24 1 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGCCATCCACTTA............................................................ 22 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTTAG........................................................... 24 2 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGACATCCACTTTA........................................................... 23 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGATCATCCACTATTT.......................................................... 25 2 1 1.00 1 1 0
....................................................................................................ATCGTACAAGGTCATCCACTT............................................................. 21 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTTGAA.......................................................... 25 3 1 1.00 1 1 0
...................................................................................................AATCGTACAGTGCCATCCACTT............................................................. 22 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCCCTATT........................................................... 24 2 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGTCATCCACTTATA.......................................................... 24 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCA................................................................ 19 0 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCAGTTAT........................................................... 24 2 1 1.00 1 1 0
...................................................................................................AATCGTACAAGGTCATCCACTTT............................................................ 23 1 1 1.00 1 1 0
...................................................................................................AATCGCACAGGGTCATCCACTTT............................................................ 23 1 1 1.00 1 1 0
...................................................................................................AATCGTACCGGGTCATCCACTT............................................................. 22 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTTTAG.......................................................... 25 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTAATCCACTT............................................................. 22 1 1 1.00 1 1 0
....................................................................................GCTTCACTTATGCCGAATCGTACA.......................................................................... 24 0 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTAATCCACTTTTT.......................................................... 25 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTATT........................................................... 24 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCTTCCACTTA............................................................ 23 2 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGTCAACCACTTT............................................................ 22 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTTTTA.......................................................... 25 1 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGTCATCCACTTAA........................................................... 23 2 1 1.00 1 1 0
...................................................................................................AATCATACAGGGTCATCCACTTT............................................................ 23 1 1 1.00 1 1 0
.....................................................................................................TCGTACAGGGTCATCCACTTTTTC......................................................... 24 0 1 1.00 1 1 0
.....................................................................................................TCGTACAGGGTCATCCACTTTA........................................................... 22 1 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATACATTTT............................................................ 23 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATACACTTTAT.......................................................... 25 2 1 1.00 1 1 0
...................................................................................................AATCGTAAAGGGTCATCCACTTTAA.......................................................... 25 3 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGTCCTCCACTTTA........................................................... 23 2 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGCCATCCACT.............................................................. 21 1 1 1.00 1 1 0
.....................................................................................................TCGTACAGGGTCATCCACTT............................................................. 20 0 1 1.00 1 1 0
...................................................................................................AATCGTACAGGGTCATCCACTGT............................................................ 23 1 1 1.00 1 1 0
....................................................................................................ATCGTACAGGGTCATCCACTTAGA.......................................................... 24 3 3 0.67 2 2 0
...................................................................................................AATCGGACAGGGTCATCCACTTAA........................................................... 24 3 2 0.50 1 1 0
...................................................................................................AATGGTACCGGGTCCTCCACTT............................................................. 22 3 5 0.20 1 1 0

Anti-sense strand reads

CTGCATCGTGCAGATGGACTCCGCCACCGAAGGGAAAGGTCCGGCTCGAAACCATGAACCTCTCACCAATAGGGACAGGAGAAGCGAAGTGAATACGGCTTAGCATGTCCCAGTAGGTGAAAAAGTCATAGTTCACGTGTCTGAGACGTCGGACCGAAGGGCGCGGGCCTAGGACGGAGACT
***********************************...((((....(((((((((((.(((((((((....((((((....(((((.........)).)))....))))))....))))))))).))))))))).))......))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:48 PM