ID:

rno-mir-466c

 Coordinate:

chr17:72060077-72060155 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.6 -41.3 -41.2
mature
  1. chr17:71792615-71792638 -
  2. chr17:71802584-71802607 -
  3. chr17:71804282-71804305 -
  4. chr17:72060122-72060145 -
  5. chr17:72061771-72061794 -
star
  1. chr1:13341030-13341052 -
  2. chr1:18520862-18520884 -
  3. chr1:114686597-114686619 -
  4. chr1:218461484-218461506 -
  5. chr1:243821644-243821666 +
  6. chr12:13506294-13506316 -
  7. chr12:21846894-21846916 -
  8. chr12:43006337-43006359 -
  9. chr12:46289566-46289588 -
  10. chr17:58402882-58402904 -
  11. chr17:72060085-72060107 -
  12. chr19:12869186-12869208 -
  13. chr19:24378198-24378220 +
  14. chr19:54583283-54583305 -
  15. chr2:185758762-185758784 -
  16. chr20:47867831-47867853 -
  17. chr5:40669493-40669515 -
  18. chr6:8652816-8652838 -
  19. chr7:113118222-113118244 -
  20. chr8:123991458-123991480 -

Sense Strand Reads

TGATGAGTTTGAAATCAAGCTGGAGTTCATGTGATGCCCTTATGTATGTGCATGTGTGTATGTGATGTGTGTATGTACATGTGTGTATATGAAGAAACATATACATGCACACATACACACACACTGGCACAAACACACACACACACACAAAATGGCAGACATTTGAAAGAGAGTCTCAG
*********************************************.(((((..((((((.((((.((((((((((((.((((..............)))).)))))))))))))))).))))))..))))).....******************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
............................................................TGTGATGTGTGTATGTACATGTGT............................................................................................... 24 0 5 33.40 167 165 2 0
...........................................................ATGTGATGTGTGTATGTACATGT................................................................................................. 23 0 5 14.20 71 62 9 0
............................................................TGTGATGTGTGTATGTACATGTG................................................................................................ 23 0 5 11.00 55 52 2 1
............................................................TGTGATGTGTGTATGTACATGT................................................................................................. 22 0 5 9.20 46 29 17 0
............................................................TGTGATGTGTGTATGTACATGTGTT.............................................................................................. 25 1 5 8.80 44 42 2 0
............................................................TGTGATGTGTGTATGTACATGTGA............................................................................................... 24 1 5 6.40 32 29 3 0
.............................................................GTGATGTGTGTATGTACATGTGT............................................................................................... 23 0 5 1.80 9 9 0 0
............................................................TGTGATGTGTGTATGTACATGTTTT.............................................................................................. 25 2 8 1.50 12 9 3 0
............................................................TGTGATGTGTGTATGTACATGTGTTT............................................................................................. 26 1 5 1.40 7 7 0 0
............................................................TGTGATGTGTGTATGTACATGTT................................................................................................ 23 1 5 1.20 6 3 3 0
...........................................................ATGTGATGTGTGTATGTACATGTAT............................................................................................... 25 1 5 1.00 5 5 0 0
...........................................................ATGTGATGTGTGTATGTACATG.................................................................................................. 22 0 5 1.00 5 5 0 0
............................................................TGTGATGTGTGTATGTACATGTGTAT............................................................................................. 26 1 6 1.00 6 6 0 0
.............................................................GTGATGTGTGTATGTACATGTGTT.............................................................................................. 24 1 5 0.80 4 4 0 0
............................................................TGTGATGTGTGTATGTACATGTGTTA............................................................................................. 26 2 7 0.71 5 5 0 0
............................................................TGTGATGTGTGTATGTACAT................................................................................................... 20 0 5 0.60 3 1 2 0
...........................................................ATGTGATGTGTGTATGTACATGTGT............................................................................................... 25 0 5 0.60 3 2 1 0
............................................................TGTGATGTGTGTATGTACATGTGC............................................................................................... 24 1 5 0.60 3 3 0 0
...........................................................ATGTGATGTGTGTATGTACATGTTT............................................................................................... 25 1 5 0.60 3 3 0 0
............................................................TGTGATGTGTGTATGTACATGTAT............................................................................................... 24 1 12 0.50 6 6 0 0
............................................................TGTGATGTGTGTATGTACATGTGAT.............................................................................................. 25 2 10 0.50 5 5 0 0
............................................................TGTGATGTGTGTATGTACATGTTA............................................................................................... 24 2 7 0.43 3 3 0 0
..........................................................TATGTGATGTGTGTATGTACATGT................................................................................................. 24 0 5 0.40 2 2 0 0
.............................................................GTGATGTGTGTATGTACATGT................................................................................................. 21 0 5 0.40 2 2 0 0
............................................................TGTGATGTGTGTATGTACATGTGTAA............................................................................................. 26 2 8 0.38 3 3 0 0
............................................................TGTGATGTGTGTATGTACA.................................................................................................... 19 0 8 0.38 3 1 2 0
............................................................TGTGATGTGTGTATGTACATGTGAA.............................................................................................. 25 2 8 0.38 3 3 0 0
..................................................................................................ATATACATGCACACATACACACA.......................................................... 23 0 20 0.35 7 7 0 0
............................................................TGTGATGTGTGTATGTACATGTA................................................................................................ 23 1 12 0.33 4 2 2 0
............................................................TGTGATGTGTGTACGTACATGTGT............................................................................................... 24 1 6 0.33 2 2 0 0
............................................................TGTGATGTGTGAATGTACATGTGT............................................................................................... 24 1 6 0.33 2 2 0 0
............................................................TGTGATGTGTGTAAGTACATGTGT............................................................................................... 24 1 6 0.33 2 2 0 0
..................................................................................................ATATACATGCACACATACACAC........................................................... 22 0 20 0.30 6 6 0 0
...........................................................ATGTGATGTGTGTATGTACATGTAA............................................................................................... 25 2 7 0.29 2 2 0 0
............................................................TGTGATGTATGTATGTACATGTGT............................................................................................... 24 1 9 0.22 2 2 0 0
............................................................TGTGATGTGTGTATGTACATGTGATT............................................................................................. 26 2 5 0.20 1 1 0 0
............................................................TGTGATGTGTGTATGTACCTGTGT............................................................................................... 24 1 5 0.20 1 1 0 0
...........................................................ATGTGATGTGTGTATGTACATGTG................................................................................................ 24 0 5 0.20 1 1 0 0
..............................................................TGATGTGTGTATGTACATGTGT............................................................................................... 22 0 5 0.20 1 0 1 0
...........................................................ATGTGATGTGTGTATGTATATGT................................................................................................. 23 1 20 0.20 4 2 2 0
............................................................TGTGATGAGTGTATGTACATGTGT............................................................................................... 24 1 5 0.20 1 1 0 0
...........................................................ATGTGATGAGTGTATGTACATGT................................................................................................. 23 1 5 0.20 1 1 0 0
......................................................TGTGTATGTGATGTGTGTATGTACAT................................................................................................... 26 0 5 0.20 1 1 0 0
..............................................................TGATGTGTGTATGTACATGT................................................................................................. 20 0 5 0.20 1 0 1 0
............................................................TGTGATGTGTGTATGTACATGTTT............................................................................................... 24 1 5 0.20 1 1 0 0
............................................................TGTGATGTGTGTATGTACATG.................................................................................................. 21 0 5 0.20 1 1 0 0
............................................................TGTGATGTGTGTATGTACCTGTG................................................................................................ 23 1 6 0.17 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGAGT............................................................................................... 24 1 6 0.17 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGCGTT.............................................................................................. 25 2 6 0.17 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGTTTTT............................................................................................. 26 2 6 0.17 1 1 0 0
............................................................TGTGATGTGTGAATGTACATGTC................................................................................................ 23 2 6 0.17 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGTGTAAA............................................................................................ 27 2 6 0.17 1 1 0 0
......................................................TGTGTATGTGATGTGTGTATGTA...................................................................................................... 23 0 6 0.17 1 1 0 0
...........................................................ATGTGATGTGTGTATGTTCATGT................................................................................................. 23 1 6 0.17 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGTGG............................................................................................... 24 1 6 0.17 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGAGTGT............................................................................................. 26 1 6 0.17 1 1 0 0
............................................................TGTGATGTGTGAATGTACATGCGT............................................................................................... 24 2 6 0.17 1 1 0 0
............................................................TGTGATGTGTGTATGTACCTGTGTTT............................................................................................. 26 2 6 0.17 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGTAA............................................................................................... 24 2 19 0.16 3 3 0 0
.................................................................................................CATATACATGCACACATACACA............................................................ 22 0 20 0.15 3 3 0 0
.............................................................GTGATGTGTGTATGTACAAGTCT............................................................................................... 23 2 7 0.14 1 1 0 0
............................................................TATGATGTGTGTATGTACATGTGT............................................................................................... 24 1 7 0.14 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGAGA............................................................................................... 24 2 7 0.14 1 1 0 0
............................................................TGTGATGTGTGTAAGTACATGTGTT.............................................................................................. 25 2 7 0.14 1 1 0 0
...........................................................ATGTGATGTGTGTATGTACATGTGAT.............................................................................................. 26 2 8 0.13 1 1 0 0
............................................................TGTGATGTGTGTATGTTCATGTGT............................................................................................... 24 1 8 0.13 1 1 0 0
............................................................TGAGATGTGTGTATGTACATGT................................................................................................. 22 1 8 0.13 1 0 1 0
............................................................AGTGATGTGTGTATGTACATGTGTT.............................................................................................. 25 2 8 0.13 1 1 0 0
.............................................................GTGCTGTGTGTATGTACATGTGT............................................................................................... 23 1 16 0.13 2 2 0 0
............................................................TGTGATGTGTGTATGTACATGTGAGA............................................................................................. 26 2 8 0.13 1 1 0 0
............................................................TGTGATGTGTGAATGTACATGAGTT.............................................................................................. 25 3 9 0.11 1 1 0 0
............................................................TGTGATGTGTGTAGGTACATGTGTA.............................................................................................. 25 2 9 0.11 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGTGTTG............................................................................................. 26 2 11 0.09 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGTTTTTT............................................................................................ 27 3 11 0.09 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGTCAA.............................................................................................. 25 3 15 0.07 1 1 0 0
...........................................................ATGTGATGTGTGTATGTATATGTGT............................................................................................... 25 1 16 0.06 1 1 0 0
...........................................................GTGTGATGTGTGTATGTACATGT................................................................................................. 23 1 18 0.06 1 0 1 0
............................................................TGTGATGTGTGTATGTACATGTGTAAT............................................................................................ 27 3 18 0.06 1 1 0 0
.....................................................GTGTGTATGTGATGTGTGTATGT....................................................................................................... 23 0 18 0.06 1 1 0 0
............................................................TGTGATGTGTGTATGTACATGTTAA.............................................................................................. 25 3 19 0.05 1 1 0 0
...........................................................GTGTGATGTGTCTATGTACATGT................................................................................................. 23 2 20 0.05 1 1 0 0
..................................................................................................ATATACATGCACACATACAC............................................................. 20 0 20 0.05 1 0 1 0
...................................................................................................TATACATGCACACATACACAC........................................................... 21 0 20 0.05 1 1 0 0
............................................................TGTGATGTATGTATGTACATGTTTT.............................................................................................. 25 3 20 0.05 1 1 0 0
............................................................TGAGATGTGTGTATGTACATGTGAT.............................................................................................. 25 3 20 0.05 1 1 0 0
...........................................................ATGTGATGTGTGTATGTATATGTG................................................................................................ 24 1 20 0.05 1 1 0 0

Anti-sense strand reads

ACTACTCAAACTTTAGTTCGACCTCAAGTACACTACGGGAATACATACACGTACACACATACACTACACACATACATGTACACACATATACTTCTTTGTATATGTACGTGTGTATGTGTGTGTGACCGTGTTTGTGTGTGTGTGTGTGTTTTACCGTCTGTAAACTTTCTCTCAGAGTC
*******************************************.(((((..((((((.((((.((((((((((((.((((..............)))).)))))))))))))))).))))))..))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:38 PM