ID:

rno-mir-466b-3

 Coordinate:

chr17:72069566-72069651 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.1 -40.6 -40.4
mature
  1. chr17:71809096-71809119 -
  2. chr17:71812130-71812153 -
  3. chr17:72066585-72066608 -
  4. chr17:72069619-72069642 -
star

Sense Strand Reads

TGATTTCAAACTCAGGCTTCTGGGATTCATGTGATGTCTCTATATATTTGCATGTGTATATATGTGTGTGTGTATGTCCATGTGTGTATATGAATATACATACACACACACATACACACACGTGCAAGCACACACACAGGAATGGCAAACATTTGGGGGGCAGATTCAGGATGAGGAGTTAAAGTC
***********************************...........(((((((((((...(((((((((((((((((.(((((....))))).....)))))))))))))))))...))))))))))).......................*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...........................................................ATATGTGTGTGTGTATGTCCATGT....................................................................................................... 24 0 4 17.75 71 71 0
.............................................................ATGTGTGTGTGTATGTCCATGT....................................................................................................... 22 0 4 3.75 15 15 0
...........................................................ATATGTGTGTGTGTATGTCCAT......................................................................................................... 22 0 5 2.80 14 14 0
.............................................................ATGTGTGTGTGTATGTCCATGTGT..................................................................................................... 24 0 4 2.00 8 8 0
...........................................................ATATGTGTGTGTGTATGTCCATGTAT..................................................................................................... 26 1 8 1.00 8 8 0
...........................................................ATATGTGTGTGTGTATGTCCATGTTT..................................................................................................... 26 1 7 0.86 6 6 0
.............................................................ATGTGTGTGTGTATGTCCATGTAT..................................................................................................... 24 1 20 0.65 13 13 0
...........................................................ATATGTGTGTGTGTATGTCCATTT....................................................................................................... 24 1 7 0.57 4 4 0
...........................................................ATATGTGTGTGTGTATGTCCATGA....................................................................................................... 24 1 11 0.55 6 6 0
...........................................................ATATGTGTGTGTGTATGTCCATG........................................................................................................ 23 0 4 0.50 2 2 0
............................................................TATGTGTGTGTGTATGTCCATGT....................................................................................................... 23 0 4 0.50 2 2 0
...........................................................ATATGTGTGTGTGTATGTCCATGTAA..................................................................................................... 26 2 14 0.43 6 6 0
.............................................................ATGTGTGTGTGTATGTCCATGTT...................................................................................................... 23 1 12 0.33 4 4 0
...........................................................ATATGTGTGTGTGTATGTCCATGTT...................................................................................................... 25 1 7 0.29 2 2 0
.............................................................ATGTGTGTGTGTATGTCCATGTGTGT................................................................................................... 26 0 4 0.25 1 1 0
.............................................................ATGTGTGTGTGTATGTCCATGTGTT.................................................................................................... 25 1 8 0.25 2 2 0
.............................................................ATGTGTGTGTGTATGTCCATGTG...................................................................................................... 23 0 4 0.25 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCATGTTTT.................................................................................................... 27 2 8 0.25 2 2 0
.............................................................ATGTGTGTGTGTATGTCCATG........................................................................................................ 21 0 4 0.25 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCATTTTT..................................................................................................... 26 2 14 0.21 3 3 0
...........................................................ATATGTGTGTGTGTATGTCCA.......................................................................................................... 21 0 5 0.20 1 1 0
....................................................................TGTGTATGTCCATGTGTGTAT................................................................................................. 21 0 20 0.20 4 4 0
..........................................................AATATGTGTGTGTGTATGTCCATGT....................................................................................................... 25 1 5 0.20 1 1 0
...........................................................ATATGTGTGTGTGTATGTCC........................................................................................................... 20 0 6 0.17 1 0 1
.............................................................ATGTGTGTGTGTATGTCCATGTTT..................................................................................................... 24 1 12 0.17 2 2 0
.............................................................ATGTGTGTGTGTATGTCCATGTGTTAA.................................................................................................. 27 2 6 0.17 1 1 0
.............................................................ATGTGTGTGTGTATGTCCAT......................................................................................................... 20 0 6 0.17 1 1 0
.............................................................ATGTGTGTGTGTATGTCCATGA....................................................................................................... 22 1 20 0.15 3 3 0
...........................................................ATATGTGTGTGTGTATGTCCATTTAT..................................................................................................... 26 2 20 0.15 3 3 0
..................................................................TGTGTGTATGTCCATGTGTGTAT................................................................................................. 23 0 20 0.15 3 3 0
....................................................................TGTGTATGTCCATGTGTGTATAT............................................................................................... 23 0 15 0.13 2 2 0
...........................................................TTATGTGTGTGTGTATGTCCATGT....................................................................................................... 24 1 8 0.13 1 1 0
.............................................................ATGTGTGTGTGTATGTCCATGTGTAT................................................................................................... 26 1 16 0.13 2 2 0
...........................................................ATATGTGTGTGTGTATGTCCATGTA...................................................................................................... 25 1 8 0.13 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCAA......................................................................................................... 22 1 8 0.13 1 1 0
.............................................................ATGTGTGTGTGTATGTCCATGTGA..................................................................................................... 24 1 8 0.13 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCATAT....................................................................................................... 24 1 19 0.11 2 2 0
..............................................................TGTGTGTGTGTATGTCCATGTGT..................................................................................................... 23 0 10 0.10 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCTT......................................................................................................... 22 1 10 0.10 1 1 0
.............................................................ATTTGTGTGTGTATGTCCATGTGT..................................................................................................... 24 1 10 0.10 1 1 0
...........................................................ATATGAGTGTGTGTATGTCCATG........................................................................................................ 23 1 10 0.10 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCAAGA....................................................................................................... 24 2 20 0.10 2 2 0
...........................................................ATATGTGAGTGTGTATGTCCAT......................................................................................................... 22 1 11 0.09 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCATGTAATT................................................................................................... 28 3 16 0.06 1 1 0
....................................................................TGTGTATGTCCATGTGTGTATA................................................................................................ 22 0 16 0.06 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCATGAAT..................................................................................................... 26 2 16 0.06 1 1 0
....................................................................TGTGTATGTCCATGTGTGTATTT............................................................................................... 23 1 20 0.05 1 1 0
.............................................................ATGTGTGTGTGTATGTCCATGTTTT.................................................................................................... 25 2 20 0.05 1 1 0
.............................................................ATGTGTGTGTGTATGTCCATGTGTAA................................................................................................... 26 2 20 0.05 1 1 0
...........................................................ATATGTGTGTGTGTATGTCCATA........................................................................................................ 23 1 20 0.05 1 1 0

Anti-sense strand reads

ACTAAAGTTTGAGTCCGAAGACCCTAAGTACACTACAGAGATATATAAACGTACACATATATACACACACACATACAGGTACACACATATACTTATATGTATGTGTGTGTGTATGTGTGTGCACGTTCGTGTGTGTGTCCTTACCGTTTGTAAACCCCCCGTCTAAGTCCTACTCCTCAATTTCAG
***********************************...........(((((((((((...(((((((((((((((((.(((((....))))).....)))))))))))))))))...))))))))))).......................*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:38 PM