ID:

rno-mir-466b-2

Coordinate:

chr17:71809047-71809128 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-49.1	-48.8

mature

star

Sense Strand Reads

ATGATGAGTTAGAGATAACCTCGGATTCATGTGCTGCCCCTATGTATGTGCATGTGTGTATATGTGTGTGTGTATGTCCATGTGTGTATATGATTATACATATACATACACACATACACATATACGCAAGCACACACACACAAGTGGCAAGCACTTGGGAGACAGAGTCAGGGAGTTCAAAC ******************************************..(((((.(((((((((.(((((((((((((((..(((((((((......)))))))))))))))))))))))).))))))))).))))).*********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528819 10dpp_testes	GSM1528817 Adult_testes
...........................................................ATATGTGTGTGTGTATGTCCATGT...................................................................................................	24	0	4	17.75	71	71	0
.............................................................ATGTGTGTGTGTATGTCCATGT...................................................................................................	22	0	4	3.75	15	15	0
...........................................................ATATGTGTGTGTGTATGTCCAT.....................................................................................................	22	0	5	2.80	14	14	0
.............................................................ATGTGTGTGTGTATGTCCATGTGT.................................................................................................	24	0	4	2.00	8	8	0
...........................................................ATATGTGTGTGTGTATGTCCATGTAT.................................................................................................	26	1	8	1.00	8	8	0
...........................................................ATATGTGTGTGTGTATGTCCATGTTT.................................................................................................	26	1	7	0.86	6	6	0
...................................................................................................ATATACATACACACATACACA..............................................................	21	0	20	0.85	17	17	0
.............................................................ATGTGTGTGTGTATGTCCATGTAT.................................................................................................	24	1	20	0.65	13	13	0
...........................................................ATATGTGTGTGTGTATGTCCATTT...................................................................................................	24	1	7	0.57	4	4	0
...........................................................ATATGTGTGTGTGTATGTCCATGA...................................................................................................	24	1	11	0.55	6	6	0
...........................................................ATATGTGTGTGTGTATGTCCATG....................................................................................................	23	0	4	0.50	2	2	0
............................................................TATGTGTGTGTGTATGTCCATGT...................................................................................................	23	0	4	0.50	2	2	0
...........................................................ATATGTGTGTGTGTATGTCCATGTAA.................................................................................................	26	2	14	0.43	6	6	0
.............................................................ATGTGTGTGTGTATGTCCATGTT..................................................................................................	23	1	12	0.33	4	4	0
...........................................................ATATGTGTGTGTGTATGTCCATGTT..................................................................................................	25	1	7	0.29	2	2	0
...........................................................ATATGTGTGTGTGTATGTCCATGTTTT................................................................................................	27	2	8	0.25	2	2	0
.............................................................ATGTGTGTGTGTATGTCCATG....................................................................................................	21	0	4	0.25	1	1	0
.....................................................................................................ATACATACACACATACACATAT...........................................................	22	0	20	0.25	5	5	0
.............................................................ATGTGTGTGTGTATGTCCATGTGTT................................................................................................	25	1	8	0.25	2	2	0
.............................................................ATGTGTGTGTGTATGTCCATGTG..................................................................................................	23	0	4	0.25	1	1	0
.............................................................ATGTGTGTGTGTATGTCCATGTGTGT...............................................................................................	26	0	4	0.25	1	1	0
...........................................................ATATGTGTGTGTGTATGTCCATTTTT.................................................................................................	26	2	14	0.21	3	3	0
..........................................................AATATGTGTGTGTGTATGTCCATGT...................................................................................................	25	1	5	0.20	1	1	0
....................................................................TGTGTATGTCCATGTGTGTAT.............................................................................................	21	0	20	0.20	4	4	0
...........................................................ATATGTGTGTGTGTATGTCCA......................................................................................................	21	0	5	0.20	1	1	0
...........................................................ATATGTGTGTGTGTATGTCC.......................................................................................................	20	0	6	0.17	1	0	1
.............................................................ATGTGTGTGTGTATGTCCAT.....................................................................................................	20	0	6	0.17	1	1	0
.............................................................ATGTGTGTGTGTATGTCCATGTTT.................................................................................................	24	1	12	0.17	2	2	0
.............................................................ATGTGTGTGTGTATGTCCATGTGTTAA..............................................................................................	27	2	6	0.17	1	1	0
.............................................................ATGTGTGTGTGTATGTCCATGA...................................................................................................	22	1	20	0.15	3	3	0
..................................................................TGTGTGTATGTCCATGTGTGTAT.............................................................................................	23	0	20	0.15	3	3	0
...........................................................ATATGTGTGTGTGTATGTCCATTTAT.................................................................................................	26	2	20	0.15	3	3	0
....................................................................TGTGTATGTCCATGTGTGTATAT...........................................................................................	23	0	15	0.13	2	2	0
...........................................................ATATGTGTGTGTGTATGTCCAA.....................................................................................................	22	1	8	0.13	1	1	0
...........................................................ATATGTGTGTGTGTATGTCCATGTA..................................................................................................	25	1	8	0.13	1	1	0
.............................................................ATGTGTGTGTGTATGTCCATGTGTAT...............................................................................................	26	1	16	0.13	2	2	0
...........................................................TTATGTGTGTGTGTATGTCCATGT...................................................................................................	24	1	8	0.13	1	1	0
.............................................................ATGTGTGTGTGTATGTCCATGTGA.................................................................................................	24	1	8	0.13	1	1	0
...........................................................ATATGTGTGTGTGTATGTCCATAT...................................................................................................	24	1	19	0.11	2	2	0
..............................................................TGTGTGTGTGTATGTCCATGTGT.................................................................................................	23	0	10	0.10	1	1	0
...........................................................ATATGTGTGTGTGTATGTCCTT.....................................................................................................	22	1	10	0.10	1	1	0
...........................................................ATATGTGTGTGTGTATGTCCAAGA...................................................................................................	24	2	20	0.10	2	2	0
.............................................................ATTTGTGTGTGTATGTCCATGTGT.................................................................................................	24	1	10	0.10	1	1	0
...........................................................ATATGAGTGTGTGTATGTCCATG....................................................................................................	23	1	10	0.10	1	1	0
...........................................................ATATGTGAGTGTGTATGTCCAT.....................................................................................................	22	1	11	0.09	1	1	0
...........................................................ATATGTGTGTGTGTATGTCCATGTAATT...............................................................................................	28	3	16	0.06	1	1	0
....................................................................TGTGTATGTCCATGTGTGTATA............................................................................................	22	0	16	0.06	1	1	0
...........................................................ATATGTGTGTGTGTATGTCCATGAAT.................................................................................................	26	2	16	0.06	1	1	0
.............................................................ATGTGTGTGTGTATGTCCATGTGTAA...............................................................................................	26	2	20	0.05	1	1	0
.............................................................ATGTGTGTGTGTATGTCCATGTTTT................................................................................................	25	2	20	0.05	1	1	0
...........................................................ATATGTGTGTGTGTATGTCCATA....................................................................................................	23	1	20	0.05	1	1	0
....................................................................TGTGTATGTCCATGTGTGTATTT...........................................................................................	23	1	20	0.05	1	1	0
.............................................................ATGTGTGTGTGTATGTCCCTGTGT.................................................................................................	24	1	20	0.05	1	1	0

Anti-sense strand reads

TACTACTCAATCTCTATTGGAGCCTAAGTACACGACGGGGATACATACACGTACACACATATACACACACACATACAGGTACACACATATACTAATATGTATATGTATGTGTGTATGTGTATATGCGTTCGTGTGTGTGTGTTCACCGTTCGTGAACCCTCTGTCTCAGTCCCTCAAGTTTG *********************************************..(((((.(((((((((.(((((((((((((((..(((((((((......)))))))))))))))))))))))).))))))))).))))).******************************************	Read size	# Mismatch	Hit Count	Total Norm	Total

Generated: 04/30/2015 at 05:38 PM