ID:

rno-mir-465

Coordinate:

chrX:151297367-151297443 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.7

Sense Strand Reads

AAGAAGACTATTAGAATCTAATGTATGAACATTTCATCAAAGGGCTTGGATGCAGTGCCCTATTTAGAACGGTGCTGGTGTGATGAATGAAGTTTGATCAGTGCCTTTCTGAGTAGAGTAAGGCTTACCACATTCTACATTTAATATGATTTCTAGTGAAGTGCCTTCTGTATAATC
*********************************************.(((..((..(((.((((((((((.(((((((((..(((.......)))..))))))))).)))))))))).)))..))...)))..*********************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528817
Adult_testes
GSM1528818
Adult_testes_Mili_IP
..............................................................................................TGATCAGTGCCTTTCTGAGTAGA............................................................ 23 0 1 801.00 801 550 249 2
............................................................TATTTAGAACGGTGCTGGTGTGA.............................................................................................. 23 0 1 179.00 179 178 1 0
...............................................................................................GATCAGTGCCTTTCTGAGTAGA............................................................ 22 0 1 117.00 117 72 45 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAG............................................................. 22 0 1 72.00 72 15 57 0
............................................................TATTTAGAACGGTGCTGGTGTGAT............................................................................................. 24 0 1 58.00 58 58 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAA........................................................... 24 1 1 25.00 25 22 3 0
............................................................TATTTAGAACGGTGCTGGTGTGAA............................................................................................. 24 1 1 22.00 22 22 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGT............................................................ 23 1 1 18.00 18 10 8 0
.............................................................ATTTAGAACGGTGCTGGTGTGA.............................................................................................. 22 0 1 13.00 13 13 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGT............................................................... 20 0 1 12.00 12 0 12 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAT........................................................... 24 1 1 12.00 12 11 1 0
...................................................................................................AGTGCCTTTCTGAGTAGA............................................................ 18 0 1 9.00 9 1 8 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAAA.......................................................... 25 2 1 8.00 8 6 2 0
............................................................TATTTAGAACGGTGCTGGTGTGT.............................................................................................. 23 1 1 7.00 7 7 0 0
................................................................................................ATCAGTGCCTTTCTGAGTAGA............................................................ 21 0 1 7.00 7 4 3 0
.............................................................................................ATGATCAGTGCCTTTCTGAGTAGA............................................................ 24 1 1 7.00 7 2 5 0
...............................................................................................GATCAGTGCCTTTCTGAGTAGATCG......................................................... 25 3 2 6.50 13 0 0 13
..................................................................................................CAGTGCCTTTCTGAGTAGA............................................................ 19 0 1 6.00 6 0 6 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGACG.......................................................... 25 2 1 6.00 6 0 0 6
............................................................TATTTAGAACGGTGCTGGTGTGATGA........................................................................................... 26 0 1 5.00 5 5 0 0
..............................................................................................TGATCAGTGCCTTTCTGAG................................................................ 19 0 1 4.00 4 0 4 0
...............................................................................................GATCAGTGCCTTTCTGAGTAG............................................................. 21 0 1 4.00 4 0 4 0
..............................................................................................TGATCAGTGCCTTTTTGAGTAGA............................................................ 23 1 1 4.00 4 0 4 0
............................................................TATTTAGAACGGTGCTGGTGTG............................................................................................... 22 0 1 4.00 4 4 0 0
............................................................TATTTAGAACGGTGCTGGTGTGATT............................................................................................ 25 1 1 3.00 3 3 0 0
..............................................................................................TGATCAGTGCGTTTCTGAGTAGA............................................................ 23 1 1 3.00 3 1 2 0
...............................................................................................GATCAGTGCCTTTCTGAGTAGT............................................................ 22 1 1 3.00 3 3 0 0
..............................................................................................TTATCAGTGCCTTTCTGAGTAGA............................................................ 23 1 1 3.00 3 1 2 0
.............................................................................................ATGATCAGTGCCTTTCTGAGTAG............................................................. 23 1 1 3.00 3 0 3 0
..............................................................................................TGATCAGTGCCTTTGTGAGTAGA............................................................ 23 1 1 3.00 3 0 3 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGATCG......................................................... 26 3 1 3.00 3 0 0 3
.............................................................................................ATGATCAGTGCCTTTCTGAGTAGAA........................................................... 25 2 1 3.00 3 1 2 0
...................................................................................................AGTGCCTTTCTGAGTAG............................................................. 17 0 2 2.50 5 0 5 0
..............................................................................................TGACCAGTGCCTTTCTGAGTAGA............................................................ 23 1 1 2.00 2 1 1 0
...............................................................................................GATCAGTGCCTTTCTGAGTCG............................................................. 21 1 1 2.00 2 0 0 2
..............................................................................................TGATCAGTACCTTTCTGAGTAGA............................................................ 23 1 1 2.00 2 0 2 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAAA............................................................ 23 1 1 2.00 2 2 0 0
...............................................................................................GATCAGTGCCTTTCTGAGTAGC............................................................ 22 1 1 2.00 2 2 0 0
............................................................TATTTAGAACGGTGCTGGTGTGATTT........................................................................................... 26 2 1 2.00 2 2 0 0
..............................................................................................TGATCAGTGCCTTTCTGAATAGA............................................................ 23 1 1 2.00 2 2 0 0
..............................................................................................TGATCCGTGCCTTTCTGAGTAGA............................................................ 23 1 1 2.00 2 1 1 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAA............................................................. 22 1 1 2.00 2 0 2 0
............................................................TATTTAGAACGGTGCTGGTGTGATG............................................................................................ 25 0 1 2.00 2 2 0 0
..............................................................................................TGATCAGTGCCTTCCTGAGTAGA............................................................ 23 1 1 2.00 2 2 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAAT.......................................................... 25 1 1 2.00 2 1 1 0
..............................................................................................TGATCAGTGCCTTTATGAGTAGA............................................................ 23 1 1 2.00 2 2 0 0
............................................................TATTTAGAACGGTGCTGGTGTGAAA............................................................................................ 25 2 1 2.00 2 2 0 0
...........................................................ATATTTAGAACGGTGCTGGTGTGA.............................................................................................. 24 1 1 2.00 2 2 0 0
..............................................................................................TCATCAGTGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 0 1 0
.............................................................ATTTAGAACGGTGCTGGTGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0
..........................................................GATATTTAGAACGGTGCTGGTGT................................................................................................ 23 2 1 1.00 1 1 0 0
..............................................................................................TGATCACTGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................GATCAGTGCCTTTCTGGGTAGA............................................................ 22 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCGTTTCTGAGTAG............................................................. 22 1 1 1.00 1 0 1 0
..................................................................................................CAGTGCCTTTCTGAGTAGAA........................................................... 20 1 1 1.00 1 0 1 0
..............................................................................................TGATCAGTGCTTTTCTGAGTAGAA........................................................... 24 2 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTCG............................................................. 22 1 1 1.00 1 0 0 1
..............................................................................................TGATCAGTGCATTTCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGAAGA............................................................ 23 1 1 1.00 1 1 0 0
.............................................................ATTTAGAACGGTGCTGGTGTGAAA............................................................................................ 24 2 1 1.00 1 1 0 0
............................................................TATTTAGAACGGTGCTGGAGTGA.............................................................................................. 23 1 1 1.00 1 1 0 0
...............................................................................................GATCAGTGCCTTTATGAGTAGA............................................................ 22 1 1 1.00 1 0 1 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAAGT......................................................... 26 3 1 1.00 1 0 1 0
............................................................TATTTAGAACGGTGTTGGTGTGAT............................................................................................. 24 1 1 1.00 1 1 0 0
............................................................TATTTAGAACGGTGCTGATCTG............................................................................................... 22 2 1 1.00 1 0 0 1
..............................................................................................TGGTCAGTGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................TTATCAGTGCCTTTCTGAGTAGT............................................................ 23 2 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGA................................................................. 18 0 1 1.00 1 0 1 0
...............................................................................................GATCAGTGCCTTTCTGAGTAGTT........................................................... 23 2 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAAC.......................................................... 25 2 1 1.00 1 0 1 0
..............................................................................................TGATCAGTGCCATTCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................AATAAGTGCCTTTCTGAGTAGA............................................................ 22 2 1 1.00 1 1 0 0
............................................................TCTTTAGAACGGTGCTGGTGTGAA............................................................................................. 24 2 1 1.00 1 1 0 0
..............................................................................................TGATCAATGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 0 1 0
..............................................................................................TGATCAGGGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
............................................................TATTTAGAACGGTGCTGGTGTGAAT............................................................................................ 25 2 1 1.00 1 1 0 0
..............................................................................................TGATCAGCGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
............................................................TATCTAGACCGGTGCTGGTGTGAA............................................................................................. 24 3 1 1.00 1 1 0 0
............................................................TATTTAGAACGGTGCTGGTGTGAAAG........................................................................................... 26 3 1 1.00 1 1 0 0
.............................................................ATTTAGAACGGTGATGGTGTGA.............................................................................................. 22 1 1 1.00 1 1 0 0
............................................................TATTCAGAACGGTGCTGGTGTGA.............................................................................................. 23 1 1 1.00 1 1 0 0
..............................................................................................AGATCAGTGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTATGAGTAG............................................................. 22 1 1 1.00 1 0 1 0
.............................................................................................ATGATCAGCGCCTTTCTGAGTAGA............................................................ 24 2 1 1.00 1 1 0 0
............................................................TATTTAGAACGGTGCTGGTGTGTTA............................................................................................ 25 2 1 1.00 1 1 0 0
..................................................................................ATGAATGAAGTTTGATCAGTGCCTT...................................................................... 25 0 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTACA............................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTCGA............................................................ 23 1 1 1.00 1 0 1 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAC........................................................... 24 1 1 1.00 1 1 0 0
...............................................................................................GATCAGTGCATTTCTGAGTAGA............................................................ 22 1 1 1.00 1 1 0 0
............................................................TATTTAGAACCGTGCTGGTGTGAA............................................................................................. 24 2 1 1.00 1 1 0 0
............................................................TATTTAGAACGGTGTTGGTGTGA.............................................................................................. 23 1 1 1.00 1 1 0 0
.............................................................................................ATGATCAGTGCCTTACTGAGTAGA............................................................ 24 2 1 1.00 1 0 1 0
.............................................................................................ATGATCAGTGCCTTTCTGCGTAGA............................................................ 24 2 1 1.00 1 0 1 0
...........................................................ATATTTAGAACGGTGCTGGTGTGAT............................................................................................. 25 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTACTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
............................................................TATTTAGAACGGTGCTGGTGTGACT............................................................................................ 25 2 1 1.00 1 1 0 0
...............................................................................................GATCAGTGCCGTTCTGAGTAGA............................................................ 22 1 1 1.00 1 0 1 0
..............................................................................................TGCTCAGTGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
............................................................................................CTTGATCAGTGCCTTTCTGAGTAGA............................................................ 25 1 1 1.00 1 0 1 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAATT......................................................... 26 2 1 1.00 1 1 0 0
............................................................TATTTAGAACGCTGCTGGTGTGA.............................................................................................. 23 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGAATTTCTGAGTAGA............................................................ 23 2 1 1.00 1 1 0 0
...............................................................................................GATCAGTGCCTTCCTGAGTAGA............................................................ 22 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTAGAGTAT........................................................ 27 1 1 1.00 1 1 0 0
...............................................................................................GATCAGTGCCTTTCAGAGTAGA............................................................ 22 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTGCTGAGTAGA............................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGATTAG............................................................. 22 1 1 1.00 1 0 1 0
............................................................TATTTAGAACGGTGCTGGTGTGTT............................................................................................. 24 1 1 1.00 1 1 0 0
...............................................................................................GATTAGTGCCTTTCTGAGTAGA............................................................ 22 1 1 1.00 1 1 0 0
..............................................................................................TGTTCAGTGCCTTTCTGAGTAGA............................................................ 23 1 1 1.00 1 0 1 0
..............................................................................................TGGTCAGTGCCTTTCTGAGTAGT............................................................ 23 2 1 1.00 1 0 1 0
...........................................................ATATTTAGAACGGTGCTGGTGT................................................................................................ 22 1 1 1.00 1 1 0 0
............................................................TATTTAGAACGGTGCTGGTGTGAAGA........................................................................................... 26 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTATA............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................GATCAGTGCCTTTCTGAGTAGG............................................................ 22 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGATTAGA............................................................ 23 1 1 1.00 1 0 1 0
........................................................GTGATATTTAGAACGGTGCTGGT.................................................................................................. 23 3 1 1.00 1 1 0 0
..............................................................................................TGGTCAGTGCCTTTCTGAGTAGAC........................................................... 24 2 1 1.00 1 0 1 0
..............................................................................................TGATCAGTGCCATTCTGAGTAGAA........................................................... 24 2 1 1.00 1 1 0 0
..............................................................................................AGATCAGTGCCTTTCTGAGTAG............................................................. 22 1 1 1.00 1 0 1 0
..............................................................................................TGATCAGTGCCTTTCTGAGGAGA............................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................TGATCAGTGCCCTTCTGAGTATA............................................................ 23 2 2 0.50 1 1 0 0
.....................................................................CGGTGCTGGTGTGAT............................................................................................. 15 0 2 0.50 1 1 0 0
..............................................................................................TGATCAGTGCCTTTTTGAGTCG............................................................. 22 2 2 0.50 1 0 0 1
............................................................TATTTAGACCGGTGCTGGTGTCAA............................................................................................. 24 3 2 0.50 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGGCG............................................................. 22 2 2 0.50 1 0 0 1
.............................................................ATTTAGAAAGGTGCTGGTGTGT.............................................................................................. 22 2 2 0.50 1 1 0 0
............................................................TATTTAGAACGGTGCTGGTGTGTAT............................................................................................ 25 3 3 0.33 1 1 0 0
..............................................................................................TGATCAGTGCCTTTCTGAGTTT............................................................. 22 2 3 0.33 1 0 1 0
..................................................................................................CAGTGCCTTTCTGAGTAGT............................................................ 19 1 3 0.33 1 0 1 0
..............................................................................................TGATCAGTGTCTTTCTGAGTAGAAA.......................................................... 25 3 3 0.33 1 0 1 0
..............................................................................................TGCTCAGTGCCTTTCTGAGT............................................................... 20 1 4 0.25 1 0 1 0
..................................................................................................CAGTGCCTTTCTGAGTAGATTGAT....................................................... 24 3 5 0.20 1 1 0 0
...................................................................................................AGTGCCTTTCTGAGT............................................................... 15 0 20 0.05 1 0 1 0

Anti-sense strand reads

TTCTTCTGATAATCTTAGATTACATACTTGTAAAGTAGTTTCCCGAACCTACGTCACGGGATAAATCTTGCCACGACCACACTACTTACTTCAAACTAGTCACGGAAAGACTCATCTCATTCCGAATGGTGTAAGATGTAAATTATACTAAAGATCACTTCACGGAAGACATATTAG
*********************************************.(((..((..(((.((((((((((.(((((((((..(((.......)))..))))))))).)))))))))).)))..))...)))..*********************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:52 PM