ID:

rno-mir-455

 Coordinate:

chr5:79097208-79097285 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.2 -40.2

Sense Strand Reads

CAGGTCGCAAGCTGGGTGCTGGGCCTCTGCTGTCCTGTGCTGCCCTCCCTGGTGTGAGCGTATGTGCCTTTGGACTACATCGTGGACGCAGCACCATGCAGTCCACGGGCATATACACTTGCCTCAAGGTCTATGTCATCGAGGACCCCCTGGAGCCACCACCACAGAGGACTGGGCC
*********************************************.((.(((.(((((.((((((((((.((((((.(((.(((.......))).))).)))))).)))))))))).))))).))).))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
...............................................................................................ATGCAGTCCACGGGCATATACAC............................................................ 23 0 1 335.00 335 335 0 0
............................................................TATGTGCCTTTGGACTACATCG................................................................................................ 22 0 1 63.00 63 61 2 0
...............................................................................................ATGCAGTCCACGGGCATATACACT........................................................... 24 0 1 61.00 61 61 0 0
...............................................................................................ATGCAGTCCACGGGCATATACA............................................................. 22 0 1 51.00 51 51 0 0
............................................................TATGTGCCTTTGGACTACATCGT............................................................................................... 23 0 1 46.00 46 46 0 0
...............................................................................................ATGCAGTCCACGGGCATATAC.............................................................. 21 0 1 31.00 31 31 0 0
.................................................................................................GCAGTCCACGGGCATATACACT........................................................... 22 0 1 26.00 26 25 1 0
...............................................................................................ATGCAGTCCACGGGCATATACACA........................................................... 24 1 1 24.00 24 24 0 0
..................................................................................................CAGTCCACGGGCATATACACTT.......................................................... 22 0 1 17.00 17 17 0 0
............................................................TATGTGCCTTTGGACTACATCGA............................................................................................... 23 1 1 17.00 17 17 0 0
..............................................................................................CATGCAGTCCACGGGCATATACA............................................................. 23 0 1 14.00 14 14 0 0
..............................................................................................CATGCAGTCCACGGGCATATACAC............................................................ 24 0 1 13.00 13 13 0 0
...............................................................................................ATGCAGTCCACGGGCATATACAA............................................................ 23 1 1 10.00 10 10 0 0
...........................................................GTATGTGCCTTTGGACTACATCG................................................................................................ 23 0 1 9.00 9 9 0 0
................................................................................................TGCAGTCCACGGGCATATACAC............................................................ 22 0 1 8.00 8 8 0 0
...........................................................GTATGTGCCTTTGGACTACATCGT............................................................................................... 24 0 1 7.00 7 7 0 0
...............................................................................................ATGCAGTCCACGGGCATATACAT............................................................ 23 1 1 6.00 6 6 0 0
..................................................................................................CAGTCCACGGGCATATACACTTA......................................................... 23 1 1 6.00 6 6 0 0
.................................................................................................GCAGTCCACGGGCATATACACC........................................................... 22 1 1 6.00 6 6 0 0
.................................................................................................GCAGTCCACGGGCATATACAC............................................................ 21 0 1 6.00 6 6 0 0
..................................................................................................CAGTCCACGGGCATATACACCT.......................................................... 22 1 1 5.00 5 5 0 0
...............................................................................................ATGCAGTCCACGGGCATATACACTT.......................................................... 25 0 1 5.00 5 5 0 0
...........................................................GTATGTGCCTTTGGACTACATCGA............................................................................................... 24 1 1 5.00 5 5 0 0
.................................................................................................GCAGTCCACGGGCATATACACCA.......................................................... 23 2 1 5.00 5 5 0 0
................................................................................................TGCAGTCCACGGGCATATACA............................................................. 21 0 1 5.00 5 5 0 0
...............................................................................................ATGCAGTCCACGGGAATATACAC............................................................ 23 1 1 4.00 4 4 0 0
..................................................................................................CAGTCCACGGGCATATACACTTT......................................................... 23 1 1 4.00 4 4 0 0
............................................................TATGTGCCTTTGGACTACATCGTG.............................................................................................. 24 0 1 4.00 4 3 0 1
..............................................................................................CATGCAGTCCACGGGCATATAC.............................................................. 22 0 1 4.00 4 4 0 0
...................................................................................................AGTCCACGGGCATATACACTT.......................................................... 21 0 1 4.00 4 4 0 0
..............................................................TGTGCCTTTGGACTACATCGTGT............................................................................................. 23 1 1 3.00 3 3 0 0
....................................................................................................GTCCACGGGCATATACACT........................................................... 19 0 1 3.00 3 3 0 0
..................................................................................................CAGTCCACGGGCATATACACT........................................................... 21 0 1 3.00 3 3 0 0
............................................................TATGTGCCTTTGGACTACATCGTA.............................................................................................. 24 1 1 3.00 3 3 0 0
.................................................................................................GCAGTCCACGGGCATATACACTT.......................................................... 23 0 1 3.00 3 3 0 0
..................................................................................................CAGTCCACGGGCATATACACTATT........................................................ 24 3 1 3.00 3 3 0 0
............................................................TATGTGCCTTTGGACTACATCGTGA............................................................................................. 25 1 1 3.00 3 3 0 0
...............................................................................................ATGCACTCCACGGGCATATACAC............................................................ 23 1 1 2.00 2 2 0 0
............................................................TATGTGCCTTTGGACTACATCGAGT............................................................................................. 25 2 1 2.00 2 2 0 0
.................................................................................................GCAGTCCACGGGCATATACACTTT......................................................... 24 1 1 2.00 2 2 0 0
..............................................................................................CATGCAGTCCACGGGCATATACACT........................................................... 25 0 1 2.00 2 2 0 0
...............................................................................................ATACAGTCCACGGGCATATACAC............................................................ 23 1 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCACGGGCATATACACAT.......................................................... 25 1 1 2.00 2 2 0 0
..................................................................................................CAGTCCACGGGCATATACACC........................................................... 21 1 1 2.00 2 2 0 0
.................................................................................................GCAGTCCACGGGCATATACACTA.......................................................... 23 1 1 2.00 2 2 0 0
............................................................TATGTGCCTTTGGACTCCATCGTGA............................................................................................. 25 2 1 2.00 2 2 0 0
..................................................................................................CAGTCCACGGGCATATACACCTA......................................................... 23 2 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCACGGGCATATACAAT........................................................... 24 1 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCACGGGCATATACCC............................................................ 23 1 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCACGGGCATATAT.............................................................. 21 1 1 2.00 2 2 0 0
...........................................................ATATGTGCCTTTGGACTACATCGT............................................................................................... 24 1 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCAAGGGCATATACAC............................................................ 23 1 1 2.00 2 2 0 0
.................................................................................................GCAGTCCACGGGCATATACA............................................................. 20 0 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCACGGGCATACACAC............................................................ 23 1 1 2.00 2 2 0 0
............................................................TATGTGCCTTTGGACTACATCGTGT............................................................................................. 25 1 1 2.00 2 2 0 0
............................................................TATGTGCCTTTGGACTACATCGAA.............................................................................................. 24 2 1 2.00 2 2 0 0
..............................................................................................CATGCAGTCCACGGGCATATACT............................................................. 23 1 1 2.00 2 2 0 0
.................................................................................................GCAGTCCACGGGCATATACACTAAT........................................................ 25 3 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCACGGGGATATACAC............................................................ 23 1 1 2.00 2 2 0 0
.................................................................................................GCAGTCCACGGGCATATACACA........................................................... 22 1 1 2.00 2 2 0 0
..................................................................................................CAGTCCACGGGCATATACACTCA......................................................... 23 2 1 2.00 2 2 0 0
............................................................TATGTGCCTTTGGACTACATCGGAT............................................................................................. 25 3 1 2.00 2 2 0 0
..................................................................................................CAGTCCACGGGCATATACACCTAT........................................................ 24 3 1 2.00 2 2 0 0
..................................................................................................CAGTCCACGGGCATATACACTTAA........................................................ 24 2 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCAGGGGCATATACAC............................................................ 23 1 1 2.00 2 2 0 0
................................................................................................AGCAGTCCACGGGCATATACACTA.......................................................... 24 2 1 2.00 2 2 0 0
..................................................................................................CAGTCCACGGGCATATACACTTAGA....................................................... 25 3 1 2.00 2 2 0 0
............................................................TATGTGCCTTTGGACTACATC................................................................................................. 21 0 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCACGGGCATATACAAA........................................................... 24 2 1 2.00 2 2 0 0
...............................................................................................ATGCAGTCCACGGACATATACACT........................................................... 24 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATAAA............................................................. 22 1 1 1.00 1 1 0 0
...............................................................................................ATCCAGTCCACGGGCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
.................................................................................................GCAATCCACGGGCCTATACACT........................................................... 22 2 1 1.00 1 1 0 0
................................................................................................TGCAGTCCACGGGCATATACACC........................................................... 23 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGTTCATATACAC............................................................ 23 2 1 1.00 1 1 0 0
...............................................................................................ATCCAGTCCACAGGCATATACAC............................................................ 23 2 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACTC.......................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACACC........................................................... 24 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATA............................................................... 20 0 1 1.00 1 1 0 0
.................................................................................................GCAGTCTACGGGCATATACAC............................................................ 21 1 1 1.00 1 1 0 0
.................................................................................................GCGGTCCACGGGCATATACACT........................................................... 22 1 1 1.00 1 1 0 0
.................................................................................................ACAGTCCACGGGCATATACACTTT......................................................... 24 2 1 1.00 1 1 0 0
.................................................................................................GCAGTCCACAGGCATATACACT........................................................... 22 1 1 1.00 1 1 0 0
..............................................................................................CATGCAGTCCACGGGCATATACAA............................................................ 24 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGACATATACAC............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGACATATACACA........................................................... 24 2 1 1.00 1 1 0 0
..............................................................TGTGCCTTTGGACTACATCGTGA............................................................................................. 23 1 1 1.00 1 1 0 0
.............................................................................................CCATGCAGTCCACGGGCATATACAC............................................................ 25 0 1 1.00 1 1 0 0
.................................................................................................GCAGTCCACGGGCATATATACT........................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................ATGAAGTCCACGGGCATATACACT........................................................... 24 1 1 1.00 1 1 0 0
............................................................TATGTGCCTTTGGACTACAT.................................................................................................. 20 0 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACTAAA........................................................ 24 3 1 1.00 1 1 0 0
...............................................................................................ATGGAGTCCACGGGCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACAG............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATAT................................................................ 19 0 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACCTT......................................................... 23 2 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGCCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
................................................................................................TGCAGTCCACGGGCATATCCAC............................................................ 22 1 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGTATATACACTT.......................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGCCCACGGGCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
............................................................TATGTGCCTTTGGCCTACATCGT............................................................................................... 23 1 1 1.00 1 1 0 0
..............................................................................................CATGCAGTCCACGGGCATAT................................................................ 20 0 1 1.00 1 1 0 0
............................................................................................AACATGCAGTCCACGGGCATATACA............................................................. 25 1 1 1.00 1 1 0 0
..............................................................................................AATGCAGTCCACGGGCATATACACT........................................................... 25 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGTCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATGTAGTCCACGGGCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................CTGCAGTCCACGGGCCTATACAC............................................................ 23 2 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACTTTA........................................................ 24 2 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACC............................................................. 22 1 1 1.00 1 1 0 0
................................................................................................TGCAGTCCACGGGCATATACACA........................................................... 23 1 1 1.00 1 1 0 0
..............................................................................................CATGCAGTCCACGGGCATCTACAC............................................................ 24 1 1 1.00 1 1 0 0
................................................................................................TGCAGTCCACGGGCATATAC.............................................................. 20 0 1 1.00 1 1 0 0
.................................................................................................GCAGTCCCCGGGCATATCCACTT.......................................................... 23 2 1 1.00 1 1 0 0
.............................................................ATGTGCCTTTGGACTACATCGT............................................................................................... 22 0 1 1.00 1 1 0 0
................................................................................................TGCAGTCCACGGGCATATCCACC........................................................... 23 2 1 1.00 1 1 0 0
.................................................................................................TCAGTCCACGGGCATATACACC........................................................... 22 2 1 1.00 1 1 0 0
.................................................................................................GCAGTCCACGGGCATATACACCAA......................................................... 24 3 1 1.00 1 1 0 0
.................................................................................................GCAGTCCACGGGCATATACACTAT......................................................... 24 2 1 1.00 1 1 0 0
................................................................................................TGCAGTCCACGGGCATATACACAT.......................................................... 24 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACTCT........................................................... 24 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCATGGGCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACTC............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACCCA........................................................... 24 2 1 1.00 1 1 0 0
.................................................................................................GCAGTCCACGGGCATATACACTAA......................................................... 24 2 1 1.00 1 1 0 0
.............................................................ATGTGCCTTTGGACTACATCG................................................................................................ 21 0 1 1.00 1 1 0 0
..............................................................................................AATGCAGTCCATGGGCATATACAC............................................................ 24 2 1 1.00 1 1 0 0
.................................................................................................GCAGTCCACGGACATATACACT........................................................... 22 1 1 1.00 1 1 0 0
............................................................TATGTGCCTTTGGACTACATCGAAAA............................................................................................ 26 3 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCGACGGGCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
.................................................................................................GCAGTCCACGGGCCTATACAC............................................................ 21 1 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACTTG......................................................... 23 0 1 1.00 1 1 0 0
.................................................................................................GCAGTCCACGGGCATATACAA............................................................ 21 1 1 1.00 1 1 0 0
............................................................TATGTGCCTTTAGACTACATCGT............................................................................................... 23 1 1 1.00 1 1 0 0
..............................................................................................CATGCAGTCCACGGGCATATAAC............................................................. 23 2 1 1.00 1 1 0 0
............................................................TATGTGCCTTTGGACTACATCGTGTT............................................................................................ 26 2 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACACAA.......................................................... 25 2 1 1.00 1 1 0 0
...............................................................................................CTGCAGTCCACGGGCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCAAGGGCATATACA............................................................. 22 1 1 1.00 1 1 0 0
...............................................................................................ATGCCGTCCACGGGCATATACAC............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATAGAT............................................................ 23 2 1 1.00 1 1 0 0
............................................................TATGTGCCTTTGGACTACATCGTAA............................................................................................. 25 2 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACTTTT........................................................ 24 2 1 1.00 1 1 0 0
...............................................................................................CTGAAGTCCACGGGCATATACAC............................................................ 23 2 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACACTA.......................................................... 25 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGCCATATACACT........................................................... 24 1 1 1.00 1 1 0 0
...........................................................GTATGTGCCTTTGGACTACATT................................................................................................. 22 1 1 1.00 1 1 0 0
............................................................TAAGTGCCTTTGGCCTACATCGT............................................................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACTAT......................................................... 23 2 1 1.00 1 1 0 0
...............................................................................................CTGCAGTCCACGGGCATATACACA........................................................... 24 2 1 1.00 1 1 0 0
............................................................TATGTGCCTTTGGAATACATCGTG.............................................................................................. 24 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATAAAT............................................................ 23 2 1 1.00 1 1 0 0
................................................................................................AGCAGTCCACGGGCATATACAC............................................................ 22 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACAATT.......................................................... 25 1 1 1.00 1 1 0 0
.............................................................ATGTGCCTTTGGACTACATCGA............................................................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................ATGCAGTCCACGGGCATATACGC............................................................ 23 1 1 1.00 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACCA.......................................................... 22 2 3 0.67 2 2 0 0
...............................................................................................ATGCAGTCCATGGGAATATACAC............................................................ 23 2 2 0.50 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACCTTA........................................................ 24 3 2 0.50 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACAAGA........................................................ 24 3 2 0.50 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACCAT......................................................... 23 3 7 0.43 3 3 0 0
...........................................................GTATGTGCCTTTGGACTACATAAA............................................................................................... 24 3 4 0.25 1 1 0 0
..................................................................................................CAGTCCACGGGCATATACACCAA......................................................... 23 3 5 0.20 1 1 0 0
..................................................................................................CAGTCCACGGGCATTTACACCA.......................................................... 22 3 8 0.13 1 1 0 0
...............................................................................................ATGCAGTCCACAGGCATATACATA........................................................... 24 3 11 0.09 1 1 0 0

Anti-sense strand reads

GTCCAGCGTTCGACCCACGACCCGGAGACGACAGGACACGACGGGAGGGACCACACTCGCATACACGGAAACCTGATGTAGCACCTGCGTCGTGGTACGTCAGGTGCCCGTATATGTGAACGGAGTTCCAGATACAGTAGCTCCTGGGGGACCTCGGTGGTGGTGTCTCCTGACCCGG
*********************************************.((.(((.(((((.((((((((((.((((((.(((.(((.......))).))).)))))).)))))))))).))))).))).))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:44 PM