ID:

rno-mir-450a

 Coordinate:

chrX:158153377-158153467 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.5
mature
star
  1. chrX:158153429-158153450 +
  2. chrX:158589812-158589833 +

Sense Strand Reads

TCAGTCATATGGAGTGAAGACAGTTACCTCCGAGCTGTAGCCCCACTAAAGAGAGATGCGGAGCTGTTTTTGCGATGTGTTCCTAATGTGTGCTACAATTATATTGGGAACATTTTGCATAAATAGTTTTACATCGACACACAGGCAAAGGTTGGAAGAAAGAAGCTGCAAATCTAAGCCTAGTTACTTAG
****************************************************..((((.((((((((((.(((((.((((((((((((((.........)))))))))))))).))))).)))))))))).))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
...................................................................TTTTGCGATGTGTTCCTAATGT...................................................................................................... 22 0 1 1159.00 1159 1148 9 2
...................................................................TTTTGCGATGTGTTCCTAATGTA..................................................................................................... 23 1 1 153.00 153 153 0 0
...................................................................TTTTGCGATGTGTTCCTAATG....................................................................................................... 21 0 1 63.00 63 61 1 1
...................................................................TTTTGCGATGTGTTCCTAATGTGT.................................................................................................... 24 0 1 54.00 54 54 0 0
...................................................................TTTTGCGATGTGTTCCTAAT........................................................................................................ 20 0 3 49.33 148 146 2 0
...................................................................TTTTGCGATGTGTTCCTAATGTT..................................................................................................... 23 1 1 44.00 44 43 1 0
..................................................................TTTTTGCGATGTGTTCCTAATGT...................................................................................................... 23 0 1 35.00 35 35 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTAA.................................................................................................... 24 2 1 34.00 34 34 0 0
....................................................................TTTGCGATGTGTTCCTAATGT...................................................................................................... 21 0 1 31.00 31 31 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTGTGCT................................................................................................. 27 0 1 26.00 26 26 0 0
......................................................................................................ATTGGGAACATTTTGCATAAAT................................................................... 22 0 2 22.00 44 40 1 3
..................................................................ATTTTGCGATGTGTTCCTAATGT...................................................................................................... 23 1 1 21.00 21 21 0 0
...................................................................TTTTGCGATGTGTTCCTAATGA...................................................................................................... 22 1 1 14.00 14 14 0 0
.................................................................GTTTTTGCGATGTGTTCCTAAT........................................................................................................ 22 0 1 11.00 11 11 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTG..................................................................................................... 23 0 1 10.00 10 10 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTAT.................................................................................................... 24 1 1 10.00 10 10 0 0
...................................................................TTTTGCGATGTGTTCCTAA......................................................................................................... 19 0 3 8.33 25 24 1 0
...................................................................TTTTGCGATGTGTTCCTAATGTGTGCTA................................................................................................ 28 0 1 8.00 8 8 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTGTGC.................................................................................................. 26 0 1 8.00 8 8 0 0
......................................................................................................ATTGGGAACATTTTGCATAAA.................................................................... 21 0 2 7.00 14 11 3 0
...................................................................TTTTGCGATGTGTTCCTAATGTGTG................................................................................................... 25 0 1 6.00 6 6 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTGA.................................................................................................... 24 1 1 6.00 6 6 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTGTGCTAC............................................................................................... 29 0 1 6.00 6 6 0 0
...................................................................TTTTGCGATGTGTTCCTACTGT...................................................................................................... 22 1 1 5.00 5 5 0 0
...................................................................TTTTTCGATGTGTTCCTAATGTA..................................................................................................... 23 2 1 5.00 5 5 0 0
...................................................................TTTTGCGATGTGTTACTAATGT...................................................................................................... 22 1 1 5.00 5 5 0 0
....................................................................TTTGCGATGTGTTCCTAATG....................................................................................................... 20 0 1 5.00 5 5 0 0
.....................................................................TTGCGATGTGTTCCTAATGT...................................................................................................... 20 0 1 5.00 5 5 0 0
......................................................................................................ATTGGGAACATTTTGCATAAATT.................................................................. 23 1 2 4.50 9 9 0 0
......................................................................................................ATTGGGAACATTTTGCATAA..................................................................... 20 0 2 4.00 8 8 0 0
...................................................................TTTTGCGATGTGTTCCTAATGC...................................................................................................... 22 1 1 4.00 4 4 0 0
...................................................................TTTTGCGATGTGTACCTAATGT...................................................................................................... 22 1 1 4.00 4 4 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTTT.................................................................................................... 24 1 1 4.00 4 4 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTTA.................................................................................................... 24 2 1 4.00 4 4 0 0
...................................................................TTTTGCGATGCGTTCCTAATGT...................................................................................................... 22 1 1 4.00 4 4 0 0
...................................................................TTTTGCGATGTCTTCCTAATGT...................................................................................................... 22 1 1 4.00 4 4 0 0
......................................................................................................ATTGGGAACATTTTGCATGCAT................................................................... 22 2 6 3.67 22 0 0 22
.....................................................................TTGCGATGTGTTCCTAATGTTT.................................................................................................... 22 1 1 3.00 3 3 0 0
..................................................................TTTTTGCGATGTGTTCCTAATG....................................................................................................... 22 0 1 3.00 3 2 1 0
..................................................................ATTTTGCGATGTGTTCCTAATGTT..................................................................................................... 24 2 1 3.00 3 2 1 0
...................................................................TTTTGCGATGAGTTCCTAATGT...................................................................................................... 22 1 1 3.00 3 3 0 0
...................................................................TTTTGCGCTGTGTTCCTAATGT...................................................................................................... 22 1 1 3.00 3 3 0 0
...................................................................TTTTGCGATGTATTCCTAATGT...................................................................................................... 22 1 1 3.00 3 3 0 0
...................................................................TTTTGTGATGTGTTCCTAATGT...................................................................................................... 22 1 1 3.00 3 3 0 0
..................................................................TTTTTGCGCTGTGTTCCTAATGT...................................................................................................... 23 1 1 3.00 3 3 0 0
...................................................................TTTTGCGATGTGTTCCTAAA........................................................................................................ 20 1 3 2.67 8 8 0 0
..................................................................ATTTTGCGATGTGTTCCTAAT........................................................................................................ 21 1 3 2.33 7 6 1 0
...................................................................TTTTGCGATGTGTCCCTAATGT...................................................................................................... 22 1 1 2.00 2 2 0 0
...................................................................TTTCGCGATGTGTTCCTAATGT...................................................................................................... 22 1 1 2.00 2 2 0 0
...................................................................TTTAGCGATGTGTTCCTAATGT...................................................................................................... 22 1 1 2.00 2 2 0 0
...................................................................GTTTGCGATGTATTCCTAATGT...................................................................................................... 22 2 1 2.00 2 2 0 0
..................................................................ATTTTGCGATGTGTTCCTAATGTGT.................................................................................................... 25 1 1 2.00 2 2 0 0
...................................................................TTCTGCGATGTGTTCCTAATGT...................................................................................................... 22 1 1 2.00 2 2 0 0
...................................................................TTTTGCGACGTGTTCCTAATGT...................................................................................................... 22 1 1 2.00 2 2 0 0
...................................................................TTTTGCGATGTGTTTCTAATGT...................................................................................................... 22 1 1 2.00 2 2 0 0
...................................................................TTTTGCGATGTGTTCCTAATGAA..................................................................................................... 23 2 1 2.00 2 2 0 0
...................................................................TTTTGCGATGTGTTCCTAACGT...................................................................................................... 22 1 1 2.00 2 2 0 0
....................................................................TTTGCGATGTGTTCCTAAT........................................................................................................ 19 0 3 2.00 6 6 0 0
...................................................................TTATGCGATGTGTTCCTAATGT...................................................................................................... 22 1 1 2.00 2 2 0 0
...................................................................CTTTGCGATGTGTTCCTAATGT...................................................................................................... 22 1 1 2.00 2 2 0 0
....................................................................TTTGCGATGTGTTCCTAATGTT..................................................................................................... 22 1 1 2.00 2 2 0 0
......................................................................................................ATTGGGAACATTTTGCATA...................................................................... 19 0 2 1.50 3 3 0 0
...............................................................AAATTTTTGCGATGTGTTCCTAATGT...................................................................................................... 26 3 3 1.33 4 4 0 0
...................................................................TTTTGGGATGTGTTCCTAATGTGTGCT................................................................................................. 27 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTACTAATGTT..................................................................................................... 23 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTATTCCTAATGTGT.................................................................................................... 24 1 1 1.00 1 1 0 0
....................................................................TTTGCGATGTGTTCCTAATGA...................................................................................................... 21 1 1 1.00 1 1 0 0
....................................................................CTTGCGATGTGTTCCTAATG....................................................................................................... 20 1 1 1.00 1 1 0 0
...................................................................TTTCGCGATGTTTTCCTAATGT...................................................................................................... 22 2 1 1.00 1 1 0 0
...................................................................TTTTGCGAAGTGTTCCTAATGTA..................................................................................................... 23 2 1 1.00 1 1 0 0
.....................................................................................................TATTGGGAACATTTTGCATAAA.................................................................... 22 0 2 1.00 2 2 0 0
...................................................................TTGTGCGATGTGTTCCTAATGT...................................................................................................... 22 1 1 1.00 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCATAAAA................................................................... 22 1 2 1.00 2 2 0 0
...................................................................TTTTGCGATGTGTTCCTGATGT...................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATT....................................................................................................... 21 1 3 1.00 3 3 0 0
........................................................................CGATGTGTTCCTAATGT...................................................................................................... 17 0 1 1.00 1 1 0 0
..................................................................ATGTTGCGATGTGTTCCTAATGT...................................................................................................... 23 2 1 1.00 1 1 0 0
.................................................................CTTTTTGCGATGTGTTCCTAATGT...................................................................................................... 24 1 1 1.00 1 1 0 0
....................................................................TTTGCGATGTGTTCCTAATGTGT.................................................................................................... 23 0 1 1.00 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCATAAATTT................................................................. 24 2 2 1.00 2 2 0 0
...................................................................TTTTGCGATGCGTTCCTAATGTG..................................................................................................... 23 1 1 1.00 1 1 0 0
..................................................................TTTTTGCGATGTGTTCCTAATGA...................................................................................................... 23 1 1 1.00 1 1 0 0
....................................................................TTTGCGATGTGTTCCTAATGTA..................................................................................................... 22 1 1 1.00 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCATAAT.................................................................... 21 1 2 1.00 2 2 0 0
...................................................................TTTTGCGATGGGTTCCTAATGT...................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTACCTAATGTA..................................................................................................... 23 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTAG.................................................................................................... 24 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCCAATGT...................................................................................................... 22 1 1 1.00 1 1 0 0
....................................................................TTTGCGATGTGTTCCTAATGTGTGC.................................................................................................. 25 0 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTATTCCTAATGTA..................................................................................................... 23 2 1 1.00 1 1 0 0
...................................................................TTTTGCGAAGTGTTCCTAATGT...................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGCGTTCCTAATG....................................................................................................... 21 1 1 1.00 1 1 0 0
....................................................................TTTGCGTTGTGTTCCTAATGT...................................................................................................... 21 1 1 1.00 1 1 0 0
....................................................................TTTGCGATGTGTTCCTGATGT...................................................................................................... 21 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTTAG................................................................................................... 25 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATGAGTGT.................................................................................................. 26 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTATTT.................................................................................................. 26 3 1 1.00 1 1 0 0
...................................................................TTTTGCGAGGTGTTCCTAATGTA..................................................................................................... 23 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTA.......................................................................................................... 18 0 3 1.00 3 2 1 0
....................................................................CTTGCGATGTGTTCCTAATGT...................................................................................................... 21 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTAC.................................................................................................... 24 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTCCCTAATGTT..................................................................................................... 23 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTTTTCCTAATGT...................................................................................................... 22 1 1 1.00 1 1 0 0
................................................................TGTTTTTGCGATGTGTTCCT........................................................................................................... 20 0 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTGTGT.................................................................................................. 26 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTACTGTAG.................................................................................................... 24 3 1 1.00 1 1 0 0
.....................................................................TAGCGATGTGTTCCTAATGT...................................................................................................... 20 1 1 1.00 1 1 0 0
..................................................................ATTTTGCGATGTGTTCCTAATG....................................................................................................... 22 1 1 1.00 1 0 1 0
...................................................................TTTTGCGATGTGTTCCTAATGTAAT................................................................................................... 25 3 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTACTGTA..................................................................................................... 23 2 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTACTGTGTGCT................................................................................................. 27 1 1 1.00 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCATAAATA.................................................................. 23 0 2 1.00 2 2 0 0
..............................................................GTTGGTTTTGCGATGTGTTCCTAATAT...................................................................................................... 27 3 1 1.00 1 1 0 0
....................................................................TTTGCGATGTGTTCCTAATGTGTT................................................................................................... 24 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTGTGCAT................................................................................................ 28 2 1 1.00 1 1 0 0
..................................................................ATTTTGCGCTGTGTTCCTAATGT...................................................................................................... 23 2 1 1.00 1 1 0 0
..................................................................TTTTTGCGATGTGTTCCTCATGT...................................................................................................... 23 1 1 1.00 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATGTGTA................................................................................................... 25 1 3 0.67 2 2 0 0
...................................................................TTTTGCGATGTGTTACTAAT........................................................................................................ 20 1 3 0.67 2 2 0 0
..................................................................ATTTTGCGATGTGTTCCTAATGTGCAC.................................................................................................. 27 3 3 0.67 2 2 0 0
..................................................................TTTTTGCGATGTGTTCCTAAT........................................................................................................ 21 0 3 0.67 2 2 0 0
...................................................................TTTTGCGATGTGTTCCTACT........................................................................................................ 20 1 3 0.67 2 2 0 0
.................................................................AATTTTGCGATGTGTTCCTAATGT...................................................................................................... 24 2 3 0.67 2 2 0 0
..................................................................GTTTTGCGATGTGTTCCTAAT........................................................................................................ 21 1 3 0.67 2 2 0 0
.....................................................................................................TATTGGGAACATTTTGCATT...................................................................... 20 1 5 0.60 3 3 0 0
...................................................................TTTTGCGATGTGTTCATAATGT...................................................................................................... 22 1 2 0.50 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCATAAATC.................................................................. 23 1 2 0.50 1 1 0 0
...................................................................ATTTGCGAAGTGTTCCTAATGT...................................................................................................... 22 2 2 0.50 1 1 0 0
......................................................................................................ATTGGGAACATCTTGCATAAA.................................................................... 21 1 2 0.50 1 1 0 0
.....................................................................................................TATTGGGAACATTTTGCATAA..................................................................... 21 0 2 0.50 1 1 0 0
...................................................................TTTTGCGATGTGTTCCAAATGTTA.................................................................................................... 24 3 2 0.50 1 1 0 0
.......................................................................................................TTGGGAACCTTTTGCATAAA.................................................................... 20 1 2 0.50 1 1 0 0
......................................................................................................ATTGGGAACATCTTGCATAAATA.................................................................. 23 1 2 0.50 1 1 0 0
.......................................................................................................TTGGGAACATTTTGCATAAAT................................................................... 21 0 2 0.50 1 1 0 0
.......................................................................................................TTGGGAACATTTTGCATAAATA.................................................................. 22 0 2 0.50 1 1 0 0
...................................................................TTTTGCGATGTGTTGCTAATG....................................................................................................... 21 1 2 0.50 1 1 0 0
....................................................................TTTGCGATGTGTTCCTCATG....................................................................................................... 20 1 2 0.50 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCATCAAT................................................................... 22 1 2 0.50 1 1 0 0
..................................................................CTTTTGCGCTGTGTTCCTAATGT...................................................................................................... 23 2 2 0.50 1 1 0 0
......................................................................................................CTTGGGAACATTTTGCATAAATT.................................................................. 23 2 2 0.50 1 1 0 0
...................................................................TTTTGCGATGTGTCCCTATTGT...................................................................................................... 22 2 2 0.50 1 1 0 0
.................................................................................................ATTATATTGGGAACATTTTGCATAAAT................................................................... 27 0 2 0.50 1 1 0 0
...................................................................................................TATATTGGGAACATTTTGCATAAAT................................................................... 25 0 2 0.50 1 1 0 0
...................................................................TTTTGCGATGTGTTCTTAATGTAA.................................................................................................... 24 3 2 0.50 1 1 0 0
...................................................................TTTTGGGATGTGTTCCTAATGT...................................................................................................... 22 1 2 0.50 1 1 0 0
......................................................................................................ATTGGGAACATTTCGCATAAA.................................................................... 21 1 2 0.50 1 1 0 0
.......................................................................................................TTGGGAACATTTTGCATAAATAT................................................................. 23 1 2 0.50 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCCTAAAT................................................................... 22 1 2 0.50 1 0 0 1
......................................................................................................ATTGGGAACATTTTGCGTAAAT................................................................... 22 1 2 0.50 1 0 0 1
......................................................................................................ATTGGGAACATTTTCCATAAAT................................................................... 22 1 2 0.50 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAAAT....................................................................................................... 21 2 8 0.38 3 3 0 0
....................................................................TTTGCGATGTGTTTCTAATGTA..................................................................................................... 22 2 3 0.33 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAT......................................................................................................... 19 1 3 0.33 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCAT....................................................................... 18 0 3 0.33 1 1 0 0
....................................................................TTTGCGATGTGTTCCTAATT....................................................................................................... 20 1 3 0.33 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATTTGT.................................................................................................... 24 1 3 0.33 1 1 0 0
..................................................................ATTTTGCGATGTGTTCCTAATT....................................................................................................... 22 2 3 0.33 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATCT...................................................................................................... 22 1 3 0.33 1 1 0 0
...................................................................TTTTGCCATGTGTTCCTAAT........................................................................................................ 20 1 3 0.33 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTACTGA...................................................................................................... 22 2 3 0.33 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATTT...................................................................................................... 22 1 3 0.33 1 1 0 0
...................................................................TTTTGTGATGTGTTCCTAATGTA..................................................................................................... 23 2 3 0.33 1 1 0 0
..........................................................................................................GGAACATTTTGCATAAA.................................................................... 17 0 4 0.25 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTACTGAA..................................................................................................... 23 3 4 0.25 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAAG........................................................................................................ 20 1 4 0.25 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCATAAAG................................................................... 22 1 4 0.25 1 1 0 0
...................................................................TTTTGCAATGTGTTCCTAAT........................................................................................................ 20 1 4 0.25 1 1 0 0
...................................................................TTTTGCGATGTGTTCCTAC......................................................................................................... 19 1 4 0.25 1 1 0 0
................................................................AAATTTTGCGATGTGTTCCTAATGT...................................................................................................... 25 3 4 0.25 1 1 0 0
...................................................................TTTTGTGATGTGTTCCTAAT........................................................................................................ 20 1 5 0.20 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCCTAAATTT................................................................. 24 3 10 0.10 1 1 0 0
..................................................................ATTTTGCGATGTGTTCCTAAGGA...................................................................................................... 23 3 10 0.10 1 1 0 0
......................................................................................................ATTGGGAACATTTCGCAT....................................................................... 18 1 12 0.08 1 1 0 0
......................................................................................................ATTGGGAACATTTTGCATAATTTT................................................................. 24 3 12 0.08 1 1 0 0
..........................................................................ATGTGTTCCTAATGT...................................................................................................... 15 0 19 0.05 1 1 0 0

Anti-sense strand reads

AGTCAGTATACCTCACTTCTGTCAATGGAGGCTCGACATCGGGGTGATTTCTCTCTACGCCTCGACAAAAACGCTACACAAGGATTACACACGATGTTAATATAACCCTTGTAAAACGTATTTATCAAAATGTAGCTGTGTGTCCGTTTCCAACCTTCTTTCTTCGACGTTTAGATTCGGATCAATGAATC
****************************************************..((((.((((((((((.(((((.((((((((((((((.........)))))))))))))).))))).)))))))))).))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:53 PM