ID:

rno-mir-449c

 Coordinate:

chr2:44896066-44896164 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.5 -37.5 -37.2

Sense Strand Reads

CACTTATACCTAGCTGGCGGGCGCTTCCTGGTTTGTCTCCATAGGGGACGAAGCGTGGGTGTGTCAGACAGGCAGTGCATTGCTAGCTGGCTGTTAGAACTTCGTCCCAACAGTGGCTAGCTGCACTACCCTCTGCTGCACTTAGAAGCATGCAAAGACGTGGAAATAGTGCCATCTGGTGGATAAGGGGGTGTTCTCA
******************************************************.((((((((.((((..((.((((((..((((((..((((((.((......))..)))))).)))))))))))).)).)))).))))))))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes		 GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGT......................................................................................................... 25 0 1 59.00 59 47 12 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTT........................................................................................................ 26 0 1 22.00 22 12 10 0
...............................................................................................................AGTGGCTAGCTGCACTACCCTTTTCG.............................................................. 26 3 1 11.00 11 0 0 11
.....................................................................AGGCAGTGCATTGCTAGCTGGCTG.......................................................................................................... 24 0 1 11.00 11 6 5 0
...............................................................................................................AGTGGCTAGCTGCACTACCCTTT................................................................. 23 1 1 8.00 8 8 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTTT....................................................................................................... 27 1 1 7.00 7 6 1 0
.....................................................................AGGCAGTGCATTGCTAGCTGG............................................................................................................. 21 0 1 6.00 6 6 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTAT....................................................................................................... 27 2 1 5.00 5 2 3 0
...............................................................................................................AGTGGCTAGCTGCACTACCCTT.................................................................. 22 1 1 5.00 5 5 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTTTT...................................................................................................... 28 2 1 5.00 5 5 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTCG....................................................................................................... 27 2 1 4.00 4 0 0 4
..............................................................................................................AAGTGGCTAGCTGCACTACCCTT.................................................................. 23 2 1 4.00 4 4 0 0
......................................................................GGCAGTGCATTGCTAGCTGGCTGT......................................................................................................... 24 0 1 3.00 3 3 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTA........................................................................................................ 26 1 1 3.00 3 0 3 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTAA....................................................................................................... 27 1 1 2.00 2 1 1 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTTTA...................................................................................................... 28 2 1 2.00 2 0 2 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTTAT...................................................................................................... 28 1 1 2.00 2 2 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCT........................................................................................................... 23 0 1 2.00 2 2 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTAT......................................................................................................... 25 1 1 2.00 2 0 2 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTTTTT..................................................................................................... 29 3 1 2.00 2 2 0 0
.....................................................................AGGCAGTGCATTTCTAGCTGGCTGTTT....................................................................................................... 27 2 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCATTGCTGGCTGGCTG.......................................................................................................... 24 1 1 1.00 1 0 0 1
........................................................................CAGTGCATTGCTAGCTGGCTTTT........................................................................................................ 23 1 1 1.00 1 1 0 0
.....................................................................AGGCACTGCATTGCTAGCTGGCTGT......................................................................................................... 25 1 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCATTACTAGCTGGCTGTT........................................................................................................ 26 1 1 1.00 1 0 1 0
...............................................................................................................AGTGGCTAGCTGCACTACCCGT.................................................................. 22 2 1 1.00 1 1 0 0
....................................................................AAGGCAGTGCATTGCTAGCTGGCTGT......................................................................................................... 26 1 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCATTGCTAGC................................................................................................................ 18 0 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCCTTGCTAGCTGGCTGTAT....................................................................................................... 27 3 1 1.00 1 0 1 0
...............................................................................................................AGTGGCTAGCTGCACTACCCTTTT................................................................ 24 2 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTAA......................................................................................................... 25 2 1 1.00 1 0 1 0
.....................................................................AGGCAGTGCATAGCTAGCTGGCTGTA........................................................................................................ 26 2 1 1.00 1 0 1 0
.....................................................................AGGCAGTGCATTGCTAGCT............................................................................................................... 19 0 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGATCG...................................................................................................... 28 2 1 1.00 1 0 0 1
.....................................................................AGGCAGTGCATTGCTAGCTG.............................................................................................................. 20 0 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCATTGCTATCTGG............................................................................................................. 21 1 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGA......................................................................................................... 25 1 1 1.00 1 0 1 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTTAGA..................................................................................................... 29 0 1 1.00 1 1 0 0
..........................................................................GTGCATTGCTAGCTGGCTGTTAT...................................................................................................... 23 1 1 1.00 1 1 0 0
.....................................................................AGGCAGTTCATTGCTAGCTGGCTG.......................................................................................................... 24 1 1 1.00 1 1 0 0
..............................................................................................................AAGTGGCTAGCTGCACTACCCTTT................................................................. 24 2 1 1.00 1 1 0 0
...............................................................................................................AGTGGCTAGCTGCACTAC...................................................................... 18 0 1 1.00 1 1 0 0
..........................................................................GTGCATTGCTAGCTGGCTGT......................................................................................................... 20 0 1 1.00 1 1 0 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTTA....................................................................................................... 27 0 1 1.00 1 1 0 0
.....................................................................AGGCAGTCCATTGCTAGCTGGCTGT......................................................................................................... 25 1 1 1.00 1 0 1 0
.....................................................................AGGCAGTGCATTGCTAGCTGGCTGTTAGAA.................................................................................................... 30 0 1 1.00 1 1 0 0
..............................................................................ATTGCTAGCTGGCTGTT........................................................................................................ 17 0 2 0.50 1 1 0 0
...............................................................................................................AGTGGCTATCTGCACTACCCTT.................................................................. 22 2 2 0.50 1 1 0 0
...................................................................AAAGGCAGTGTATTGTTAGCTGG............................................................................................................. 23 3 13 0.08 1 1 0 0

Anti-sense strand reads

GTGAATATGGATCGACCGCCCGCGAAGGACCAAACAGAGGTATCCCCTGCTTCGCACCCACACAGTCTGTCCGTCACGTAACGATCGACCGACAATCTTGAAGCAGGGTTGTCACCGATCGACGTGATGGGAGACGACGTGAATCTTCGTACGTTTCTGCACCTTTATCACGGTAGACCACCTATTCCCCCACAAGAGT
*******************************************************.((((((((.((((..((.((((((..((((((..((((((.((......))..)))))).)))))))))))).)).)))).))))))))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:40 PM