ID:rno-mir-411 |
Coordinate:chr6:133858849-133858924 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -28.8 |
 |
|
GGCTTCCTGGACGCACCCTCAGCCTTTGTCCTCGGCGTCTCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCATCCCCGAGGCCCCTGGAGAGGACGCTGTCTTCGGGGAGACGCC
********************************************.(((((((..(((...((((.((((((...(((((((.((.......)))))))))...)))))).))))...))))))))))....********************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528819 10dpp_testes |
GSM1528818 Adult_testes_Mili_IP |
GSM1528817 Adult_testes |
|---|---|---|---|---|---|---|---|---|
| ...........................................................ATAGTAGACCGTATAGCGTACG............................................................................................... | 22 | 0 | 1 | 264.00 | 264 | 249 | 15 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACG............................................................................................... | 21 | 0 | 1 | 93.00 | 93 | 72 | 17 | 4 |
| ...............................................................................................TATGTAACACGGTCCACTAAC............................................................ | 21 | 0 | 1 | 66.00 | 66 | 66 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGA.............................................................................................. | 23 | 1 | 1 | 52.00 | 52 | 52 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTAC................................................................................................ | 21 | 0 | 1 | 36.00 | 36 | 36 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAAT............................................................ | 21 | 1 | 1 | 32.00 | 32 | 32 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAA............................................................. | 20 | 0 | 1 | 25.00 | 25 | 25 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGT.............................................................................................. | 23 | 1 | 1 | 25.00 | 25 | 24 | 0 | 1 |
| ...............................................................................................TATGTAACACGGTCCACTAACA........................................................... | 22 | 1 | 1 | 19.00 | 19 | 19 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTAC................................................................................................ | 20 | 0 | 1 | 14.00 | 14 | 13 | 0 | 1 |
| ................................................................................................ATGTAACACGGTCCACTAAC............................................................ | 20 | 0 | 1 | 10.00 | 10 | 10 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGA.............................................................................................. | 22 | 1 | 1 | 8.00 | 8 | 8 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAACT........................................................... | 22 | 1 | 2 | 6.00 | 12 | 12 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTAA................................................................................................ | 21 | 1 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGT.............................................................................................. | 22 | 1 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAACCA.......................................................... | 23 | 1 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| ...........................................................CTAGTAGACCGTATAGCGTACG............................................................................................... | 22 | 1 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAAA............................................................ | 21 | 1 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGAA............................................................................................. | 23 | 2 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAATT........................................................... | 22 | 2 | 3 | 3.67 | 11 | 11 | 0 | 0 |
| .............................................................AGTAGACCGTATAGCGTACGCTA............................................................................................ | 23 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ................................................................................................ATGTAACACGGTCCACTAACA........................................................... | 21 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGCT............................................................................................. | 24 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .............................................................AGTAGACCGTATAGCGTACGCT............................................................................................. | 22 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ............................................................TAGTGGACCGTATAGCGTACGC.............................................................................................. | 22 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAAAA........................................................... | 22 | 2 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATCGCGTACG............................................................................................... | 22 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .............................................................AGTAGACCGTATAGCGTACGCTTA........................................................................................... | 24 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGCTTT........................................................................................... | 25 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ............................................................TAGTAGACCGTATCGCGTACG............................................................................................... | 21 | 1 | 1 | 2.00 | 2 | 0 | 2 | 0 |
| .............................................................AGTAGACCGTATAGCGTACG............................................................................................... | 20 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGATT............................................................................................ | 25 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACAA.............................................................................................. | 23 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ................................................................................................ATGTAACACGGTCCACTAAT............................................................ | 20 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGTT............................................................................................. | 24 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ..................................................................ACCGTATAGCGTACG............................................................................................... | 15 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .............................................................AGTAGACCGTATAGCGTACGCTAA........................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATCGCGTACGA.............................................................................................. | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAACAA.......................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACA............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATGGTAGACCGTATAGCGTAA................................................................................................ | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTTCG............................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ...........................................................ATAGTAGACCGCATAGCGTACGT.............................................................................................. | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTGGACCGTATAGCGTACG............................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................................................ATGTAACACGGTCCACTAA............................................................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................................................CGTATGTAACACGGTCCACTAA............................................................. | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGCTTTA.......................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................AGTAGACCGTATAGTGTACG............................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGAAA............................................................................................ | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..............................................................................................ATATGTAACACGGTCCACTAACA........................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTA................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTAA................................................................................................ | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTCAC............................................................ | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGTTT............................................................................................ | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGCTT............................................................................................ | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGAGTACG............................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ...........................................................TTAGTAGACCGTATAGCGTAC................................................................................................ | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................AGTCGACCGTATAGCGTACGCTTA........................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACT............................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGC.............................................................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGCCCGTATAGCGTAC................................................................................................ | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATCGTAGACCGTATAGCGTACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGAATAGCGTACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGAACGTATAGCGTAC................................................................................................ | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................................................ACGTATGTAACACGGTCCACTAA............................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAGCACGGTCCACTAAC............................................................ | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGAACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGTTT............................................................................................ | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................AGTAGACCGTATAGCGTACGCTTAGA......................................................................................... | 26 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGCCCGTATAGCGTACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCAATAAC............................................................ | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGCTT............................................................................................ | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGGAGACCGTATAGCGTAC................................................................................................ | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................................................ATGTAACACGGTCCACTAACT........................................................... | 21 | 1 | 2 | 1.00 | 2 | 2 | 0 | 0 |
| ............................................................TAGTAGACCGCATAGCGTACGAA............................................................................................. | 23 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTCAT............................................................ | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTTTAGCGTACG............................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ............................................................TAGGAGACCGTATAGCGTAC................................................................................................ | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................GTAACACGGTCCACTAACC........................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAATCT.......................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGCATAGCGTACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATATCGTACGA.............................................................................................. | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTA................................................................................................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCTTA................................................................................................. | 20 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 |
| ...........................................................ATAGTAGACCGTATAGCGTACC............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................AGTCGACCATATAGCGTACGCTTA........................................................................................... | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATATTAGACCGTATAGCGTACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAAACCATATAGCGTACG............................................................................................... | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................AATAGTAGACCGTATAGCGTACGT.............................................................................................. | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTACT............................................................ | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGAA............................................................................................. | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGCT............................................................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTGGACCGTATAGCGTACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................AGTAGACCGTATAGCGTACGCTTTAGA........................................................................................ | 27 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTATAGCGTACGGTCTC.......................................................................................... | 27 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGAAGACCGTATAGCGTACGA.............................................................................................. | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................TAGTAGACCGTATAGCGTACGTTA............................................................................................ | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................AATAGTAGACCGTATAGCGTAAGT.............................................................................................. | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTAGACCGTAAAGCGTACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..............................................................................................GTATGTAACACGGTCCACTAA............................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTACACTAACA........................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATAGTGGACCGTAGAGCGTACGA.............................................................................................. | 23 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................ATACTAGACCGTATAGCGTACG............................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................................................CGTATGTAACACGGTCCACTAT............................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAATTA.......................................................... | 23 | 3 | 5 | 0.80 | 4 | 4 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAACTAA......................................................... | 24 | 3 | 3 | 0.67 | 2 | 2 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAATAT.......................................................... | 23 | 3 | 3 | 0.67 | 2 | 2 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCAATAA............................................................. | 20 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACCCGGTCCACTAAT............................................................ | 21 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTACACTAACT........................................................... | 22 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATATAACACGGTCCACTAACA........................................................... | 22 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAAGT........................................................... | 22 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTAATAG.......................................................... | 23 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTACACTAAT............................................................ | 21 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 |
| ................................................................................................ATGTAACACGGTCCACTAACAGA......................................................... | 23 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACCCGGTCCACTATT............................................................ | 21 | 3 | 9 | 0.11 | 1 | 1 | 0 | 0 |
| ..................................................................................................GTAACACGGTCCACTAATT........................................................... | 19 | 2 | 9 | 0.11 | 1 | 1 | 0 | 0 |
| ...............................................................................................TATGTAACACGGTCCACTCATT........................................................... | 22 | 3 | 11 | 0.09 | 1 | 1 | 0 | 0 |
|
CCGAAGGACCTGCGTGGGAGTCGGAAACAGGAGCCGCAGAGACACACCATGAACCTCTCTATCATCTGGCATATCGCATGCGAAATAGACACTGCATACATTGTGCCAGGTGATTGGGAGTCATAGTTTAGGTAGGGGCTCCGGGGACCTCTCCTGCGACAGAAGCCCCTCTGCGG
*********************************************.(((((((..(((...((((.((((((...(((((((.((.......)))))))))...)))))).))))...))))))))))....******************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total |
|---|
Generated: 04/30/2015 at 05:46 PM