ID:

rno-mir-410

 Coordinate:

chr6:133893997-133894072 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.0 -33.3

Sense Strand Reads

GCTTCAGGTGGTGAATTCCAGCCCCAGGGGTGCTCCGGTCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGCTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCACTCCTGTCACTTGGCAGTACATGCCAGGTGTCACAGCACTGC
*********************************************..((((.(((((((.((((((((((((.((.(((((.((.......))))))).)).)))))))))))).))))))))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...............................................................................................AATATAACACAGATGGCCTGT............................................................ 21 0 1 150.00 150 150 0
...............................................................................................AATATAACACAGATGGCCTGTAA.......................................................... 23 2 2 27.50 55 55 0
...............................................................................................AATATAACACAGATGGCCTGTAT.......................................................... 23 1 1 26.00 26 26 0
...............................................................................................AATATAACACAGATGGCCTGTTT.......................................................... 23 0 1 17.00 17 17 0
...............................................................................................AATATAACACAGATGGCCTGTA........................................................... 22 1 2 11.50 23 23 0
...............................................................................................AATATAACACAGATGGCCTGTTA.......................................................... 23 1 1 7.00 7 7 0
...............................................................................................AATATAACACAGATGGCCTGTT........................................................... 22 0 1 6.00 6 6 0
...............................................................................................AATATAACACAGATGGCCTGA............................................................ 21 1 1 6.00 6 6 0
...............................................................................................AATATAACACAGATGGCCTGTAAT......................................................... 24 2 1 6.00 6 6 0
...............................................................................................AATATAACACAGATGGCCTGTTTAA........................................................ 25 2 1 4.00 4 4 0
................................................................................................ATATAACACAGATGGCCTGTTT.......................................................... 22 0 1 4.00 4 4 0
................................................................................................ATATAACACAGATGGCCTGT............................................................ 20 0 1 4.00 4 4 0
............................................................AGGTTGTCTGTGATGAGTTCGCTTTA.......................................................................................... 26 0 1 3.00 3 3 0
...............................................................................................AATATAACACAGATGGCCTGTAAA......................................................... 24 3 4 1.25 5 5 0
...............................................................................................AATATAACACCGATGGCCTGTTA.......................................................... 23 2 1 1.00 1 1 0
...............................................................................................AATATAACACAGATGGCCTGTATTT........................................................ 25 2 1 1.00 1 1 0
................................................................................................ATATAACACAGCTGGCCTGTAT.......................................................... 22 2 1 1.00 1 1 0
............................................................AGGTTGTCTGTGATGAGTTCGTTAT........................................................................................... 25 2 1 1.00 1 1 0
............................................................AGGTTGTCTGTGATGAGTTCGCTTT........................................................................................... 25 0 1 1.00 1 1 0
...............................................................................................AATATAACCCAGATGGCCTGT............................................................ 21 1 1 1.00 1 1 0
...............................................................................................AATATAACACACATGGCCTGTTTAA........................................................ 25 3 1 1.00 1 1 0
...............................................................................................AATCTAACACAGATGGCCTGTTA.......................................................... 23 2 1 1.00 1 1 0
...............................................................................................AATATAACACAGATGGCCTGTC........................................................... 22 1 1 1.00 1 1 0
...............................................................................................AATATAACACAGACGGCCTGT............................................................ 21 1 1 1.00 1 1 0
...............................................................................................AATATAACACAGACGGCCTGTTT.......................................................... 23 1 1 1.00 1 1 0
...............................................................................................AATATAACACAGATGGCCTG............................................................. 20 0 1 1.00 1 1 0
...............................................................................................AATATAACACACATGGCCTGTTT.......................................................... 23 1 1 1.00 1 1 0
...............................................................................................AATATAACACATATGGCCTGT............................................................ 21 1 1 1.00 1 1 0
...............................................................................................AATATAACACAGATGGCCTGTCTAA........................................................ 25 3 1 1.00 1 1 0
.................................................................................................TATAACACAGATGGCCTGTTT.......................................................... 21 0 1 1.00 1 1 0
...............................................................................................AATATAACACAGATGGCCTGTAC.......................................................... 23 2 2 1.00 2 2 0
..................................................................................................ATAACACAGATGGCCTGT............................................................ 18 0 1 1.00 1 1 0
...............................................................................................AATATAACACAGATGGCCTGTAAAC........................................................ 25 3 3 0.67 2 2 0
...............................................................................................AATATAACACAGATAGCCTGT............................................................ 21 1 2 0.50 1 1 0
...............................................................................................AATCTAACACAGATGGCCTGT............................................................ 21 1 2 0.50 1 1 0
...............................................................................................AATATAACACAGATGGCCTGTTAAA........................................................ 25 3 3 0.33 1 1 0
...............................................................................................AATATAACACAGATGGCCTGTAGT......................................................... 24 2 3 0.33 1 1 0
..............................................................................................AAATATAACACCGATGGCCTGT............................................................ 22 2 4 0.25 1 1 0
...............................................................................................AATATAACACAGACGGCCTGTAA.......................................................... 23 3 8 0.25 2 2 0
...............................................................................................AATATAACACAGAGGGCCTGTTAA......................................................... 24 3 4 0.25 1 1 0
.................................................................................................TATAACACAGATGGCCTGTAA.......................................................... 21 2 4 0.25 1 1 0
...............................................................................................AATATAACACAGAAGGCCTGTA........................................................... 22 2 5 0.20 1 1 0
...............................................................................................AATATAACACAGATGGCCTGCAA.......................................................... 23 3 13 0.08 1 1 0
...........................................................................................GACGAATTCAACAGAGATGGC................................................................ 21 3 20 0.05 1 0 1

Anti-sense strand reads

CGAAGTCCACCACTTAAGGTCGGGGTCCCCACGAGGCCAGTTGTGACCCATGAACTCCTCTCCAACAGACACTACTCAAGCGAAATAATTACTGCTTATATTGTGTCTACCGGACAAAAGTTATGGTGGACGGTGAGGACAGTGAACCGTCATGTACGGTCCACAGTGTCGTGACG
*********************************************..((((.(((((((.((((((((((((.((.(((((.((.......))))))).)).)))))))))))).))))))))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:48 PM