ID:

rno-mir-379

Coordinate:

chr6:133857700-133857784 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.9 -33.3 -33.2

Sense Strand Reads

CGCCAGCTTCAGGGACAAGGCCCAGGTCTCTAGGGGTCAACGCCGTTCCATGGTTCCTGCAGAGGTGGTAGACTATGGAACGTAGGCGTTATGTTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCGTCCTCGGAGGGCACCCCGGAGGTGTTACCAACAGCGAGGAAGAGA
**************************************************(((...(((.((((..(((.(((((((..(((((((((.........)).)))))))..))))))).)))..)))))))...)))...***********************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528817
Adult_testes
GSM1528818
Adult_testes_Mili_IP
.................................................................TGGTAGACTATGGAACGTAGGAA................................................................................................. 23 2 1 122.00 122 116 2 4
.................................................................TGGTAGACTATGGAACGTAGG................................................................................................... 21 0 1 108.00 108 100 8 0
.................................................................TGGTAGACTATGGAACGTAGGA.................................................................................................. 22 1 1 97.00 97 95 2 0
.................................................................TGGTAGACTATGGAACGTAGGT.................................................................................................. 22 1 1 75.00 75 75 0 0
.................................................................TGGTAGACTATGGAACGTAGGTAT................................................................................................ 24 2 1 62.00 62 62 0 0
.................................................................TGGTAGACTATGGAACGTAGGAAT................................................................................................ 24 2 1 42.00 42 41 1 0
.................................................................TGGTAGACTATGGAACGTAGGTAA................................................................................................ 24 3 2 40.50 81 81 0 0
.................................................................TGGTAGACTATGGAACGTAGGTA................................................................................................. 23 2 1 35.00 35 35 0 0
.................................................................TGGTAGACTATGGAACGTAG.................................................................................................... 20 0 1 35.00 35 27 0 8
......................................................................................................TATGTAACATGGTCCACTAAC.............................................................. 21 0 1 27.00 27 27 0 0
.................................................................TGGTAGACTATGGAACGTAGGTTT................................................................................................ 24 2 1 20.00 20 20 0 0
.................................................................TGGTAGACTATGGAACGTAGGAAA................................................................................................ 24 3 2 19.50 39 37 1 1
.................................................................TGGTAGACTATGGAACGTAGGAT................................................................................................. 23 2 1 18.00 18 18 0 0
.................................................................TGGTAGACTATGGAACGTAGGCAA................................................................................................ 24 2 1 17.00 17 17 0 0
.................................................................TGGTAGACTATGGAACGTAGGTT................................................................................................. 23 2 1 13.00 13 13 0 0
.................................................................TGGTAGACTATGGAACGTAGGTTA................................................................................................ 24 3 1 12.00 12 12 0 0
.................................................................TGGTAGACTATGGAACGTAGGAG................................................................................................. 23 1 1 11.00 11 11 0 0
..................................................................GGTAGACTATGGAACGTAGGAA................................................................................................. 22 2 1 10.00 10 10 0 0
.................................................................TGGTAGACTATGGAACGTAGGCAT................................................................................................ 24 1 1 8.00 8 8 0 0
.................................................................TGGTAGACTATGGAACGTAGGCA................................................................................................. 23 1 1 8.00 8 8 0 0
.................................................................TGGTAGACTATGGAACGTAGGTAAT............................................................................................... 25 3 1 7.00 7 7 0 0
.................................................................TGGTAGACTATGGAACGTAGGTAG................................................................................................ 24 3 1 7.00 7 7 0 0
.................................................................TGGTAGACTATGGAACGTAGGAGT................................................................................................ 24 1 1 7.00 7 7 0 0
......................................................................................................TATGTAACACGGTCCACTAACT............................................................. 22 1 2 6.00 12 12 0 0
......................................................................................................TATGTAACATGGTCCACTAAT.............................................................. 21 1 1 5.00 5 5 0 0
..................................................................GGTAGACTATGGAACGTAGG................................................................................................... 20 0 1 5.00 5 3 2 0
..................................................................GGTAGACTATGGAACGTAGGT.................................................................................................. 21 1 1 4.00 4 4 0 0
.................................................................TGGTAGACTATGGAACGTAGGC.................................................................................................. 22 0 1 4.00 4 4 0 0
.................................................................TGGTAGACTATGGAACGTAGGTTTT............................................................................................... 25 2 1 4.00 4 4 0 0
......................................................................................................TATGTAACACGGTCCACTAATT............................................................. 22 2 3 3.67 11 11 0 0
..................................................................GGTAGACTATGGAACGTAGGTAA................................................................................................ 23 3 2 3.50 7 7 0 0
.................................................................TGGTAGACTATGGAACGTAGGAGA................................................................................................ 24 2 1 3.00 3 3 0 0
.................................................................TGGTAGACTATGGAACGTAGGCAAA............................................................................................... 25 3 1 3.00 3 3 0 0
......................................................................................................TATGTAACATGGTCCACTAACA............................................................. 22 1 1 3.00 3 3 0 0
.................................................................TGGTAGACTATGGAACGTAGGAAG................................................................................................ 24 3 3 2.33 7 7 0 0
.................................................................TGGTAGACTATGGAACGTAGGTATT............................................................................................... 25 2 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGAA.................................................................................................. 22 2 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGCACGTAGGTAT................................................................................................ 24 3 1 2.00 2 2 0 0
................................................................ATGGTAGACTATGGAACGTAGGTTT................................................................................................ 25 3 1 2.00 2 2 0 0
..................................................................GGTAGACTATGGAACGTAGGATT................................................................................................ 23 2 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTCGGAA................................................................................................. 23 3 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGGTTG................................................................................................ 24 3 2 2.00 4 4 0 0
.................................................................TGGTAGACTATGGAACGTAT.................................................................................................... 20 1 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGAAG................................................................................................. 23 2 1 2.00 2 2 0 0
..................................................................GGTAGACTATGGAACGTAGGA.................................................................................................. 21 1 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGGCAAT............................................................................................... 25 2 1 2.00 2 2 0 0
..................................................................GGTAGACTATGGAACGTAGGTGA................................................................................................ 23 2 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGGTAC................................................................................................ 24 3 1 2.00 2 2 0 0
.......................................................................................................ATGTAACATGGTCCACTAAC.............................................................. 20 0 1 2.00 2 2 0 0
.................................................................TTGTAGACTATGGAACGTAGG................................................................................................... 21 1 1 2.00 2 0 1 1
......................................................................................................TATGTAACATGGTCCACTAACT............................................................. 22 0 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGGCAAAA.............................................................................................. 26 3 1 2.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGT................................................................................................... 21 1 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGACCGTAGGAAT................................................................................................ 24 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACATAGGA.................................................................................................. 22 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGCAGG................................................................................................... 21 1 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGACA................................................................................................ 24 3 1 1.00 1 1 0 0
......................................................................................................TATGTAACATGGTCCACTAA............................................................... 20 0 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGCACGTAGGA.................................................................................................. 22 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTACGGAACGTAGGT.................................................................................................. 22 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGACCGTAGGA.................................................................................................. 22 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGACCGTAGG................................................................................................... 21 1 1 1.00 1 1 0 0
........................................................................................................TGTAACATGGTCCACTAACTA............................................................ 21 1 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGATT................................................................................................ 24 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGCACGTAG.................................................................................................... 20 1 1 1.00 1 1 0 0
.................................................................TGGTCGACTATGGAACGTAGGTAT................................................................................................ 24 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAAGA.................................................................................................. 22 2 1 1.00 1 1 0 0
.......................................................................................................ATGTAACACGGTCCACTAACT............................................................. 21 1 2 1.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGGCT................................................................................................. 23 1 1 1.00 1 1 0 0
......................................................................................................TATGTAACATGGTCCACTAACAT............................................................ 23 2 1 1.00 1 1 0 0
......................................................................................................TATGGAACATGGTCCACTAACA............................................................. 22 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGCACGTAGGAA................................................................................................. 23 3 1 1.00 1 0 0 1
.................................................................TGGTAGAATATGGAACGTAGGA.................................................................................................. 22 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGAAGA................................................................................................ 24 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGTTTA............................................................................................... 25 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTCGGCAA................................................................................................ 24 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGTTAT............................................................................................... 25 3 1 1.00 1 1 0 0
..................................................................GGTAGACTATGGAACGTAGGCT................................................................................................. 22 1 1 1.00 1 1 0 0
................................................................ATGGAAGACTATGGAACGTAGG................................................................................................... 22 2 1 1.00 1 1 0 0
..................................................................GGTAGACTATGGAACGTAGGAC................................................................................................. 22 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGTACGTAGGAA................................................................................................. 23 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGAAGT............................................................................................... 25 3 2 1.00 2 2 0 0
.................................................................TGGTAGACTATGGAACGTAGGATTT............................................................................................... 25 2 1 1.00 1 1 0 0
................................................................ATGGTAGACTATGGAACGTAGGAA................................................................................................. 24 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGA................................................................................................... 21 1 1 1.00 1 1 0 0
.................................................................TGGTAGATTATGGAACGTAGG................................................................................................... 21 1 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACATAGGT.................................................................................................. 22 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGTATA............................................................................................... 25 3 1 1.00 1 1 0 0
..................................................................GGTAGACTCTGGAACGTAGGTGT................................................................................................ 23 2 1 1.00 1 1 0 0
.....................................................................................................ATATGTAACATGGTCCACTAACT............................................................. 23 1 1 1.00 1 1 0 0
..................................................................GGTAGACTATGGAACGTAGGTAAT............................................................................................... 24 3 1 1.00 1 1 0 0
...............................................................AATGGTAGACTATGGAACGTAGG................................................................................................... 23 2 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACCTAGGTATT............................................................................................... 25 3 1 1.00 1 1 0 0
..................................................................GGTAGACTATGGAACGTAGGAG................................................................................................. 22 1 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTCGGT.................................................................................................. 22 2 1 1.00 1 1 0 0
......................................................................................................TATGTAACATGGTCCACTAT............................................................... 20 1 2 1.00 2 2 0 0
................................................................ATGGTAGACTATGGAACGTAGGA.................................................................................................. 23 2 1 1.00 1 1 0 0
.................................................................TGGTGGACTATGGAACGTAGG................................................................................................... 21 1 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTA..................................................................................................... 19 0 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGATA................................................................................................ 24 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTCGG................................................................................................... 21 1 1 1.00 1 1 0 0
.................................................................TGGTAGACTAAGGAACGTAGGT.................................................................................................. 22 2 1 1.00 1 0 1 0
.................................................................TGGCAGACTATGGAACGTAGGCA................................................................................................. 23 2 1 1.00 1 1 0 0
.................................................................TGTTAGACTATGGAACGTAGG................................................................................................... 21 1 1 1.00 1 0 1 0
.................................................................TGGTAGACTATGGAACGTAGGATAT............................................................................................... 25 3 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGAGTA............................................................................................... 25 2 1 1.00 1 1 0 0
.......................................................................................................ATGTAACATGGTCCACTAAT.............................................................. 20 1 1 1.00 1 1 0 0
.................................................................TGGTAGACTATGGACCGTAGGT.................................................................................................. 22 2 1 1.00 1 1 0 0
......................................................................................................TATGTAACATGATCCACTAA............................................................... 20 1 1 1.00 1 1 0 0
.................................................................TGGAAGACTATGGAACGTAG.................................................................................................... 20 1 1 1.00 1 1 0 0
......................................................................................................TATGTAACACGGTCCACTAATTA............................................................ 23 3 5 0.80 4 4 0 0
......................................................................................................TATGTAACACGGTCCACTAACTAA........................................................... 24 3 3 0.67 2 2 0 0
..................................................................GGTAGACTATGGAACGTAGGAAA................................................................................................ 23 3 5 0.60 3 3 0 0
......................................................................................................TATGTAACACGGTACACTAACT............................................................. 22 2 2 0.50 1 1 0 0
..................................................................GGTAGACTATGGAACGTAGGAT................................................................................................. 22 2 2 0.50 1 1 0 0
.......................................................................ACTATGGAACGTAGG................................................................................................... 15 0 2 0.50 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGAATA............................................................................................... 25 3 2 0.50 1 1 0 0
.................................................................TGGTAGCCTATGGAACGTAGGAAT................................................................................................ 24 3 2 0.50 1 1 0 0
.................................................................TGGTAGACTATGGACCGTAGGAA................................................................................................. 23 3 2 0.50 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGTCAA................................................................................................ 24 3 2 0.50 1 1 0 0
....................................................................TAGACTATGGAACGTAGTGGTAA.............................................................................................. 23 3 2 0.50 1 1 0 0
......................................................................................................TATGTAACACGGTCCACTAAGT............................................................. 22 2 2 0.50 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGGGAA................................................................................................ 24 3 2 0.50 1 1 0 0
.................................................................TGGTAGACTATGGAACGTCGGAT................................................................................................. 23 3 3 0.33 1 1 0 0
..................................................................GGTAGACTATGGAACGTAGGTTA................................................................................................ 23 3 3 0.33 1 1 0 0
..................................................................AGTAGACTGTGGAACGTAGGTG................................................................................................. 22 3 3 0.33 1 1 0 0
.................................................................TGGTAGACTATGGAACGTAGAAAT................................................................................................ 24 3 3 0.33 1 1 0 0
..................................................................GGTAGACTATGGAACGTAGGTAG................................................................................................ 23 3 3 0.33 1 1 0 0
.................................................................TGGTAGACTATGGACCGTAGGAT................................................................................................. 23 3 4 0.25 1 1 0 0
.................................................................TGGCAGACTATGGAACGTAGGTA................................................................................................. 23 3 4 0.25 1 1 0 0
..................................................................GGTAGACTATGGAACGTAGGAAG................................................................................................ 23 3 4 0.25 1 1 0 0
.................................................................TGGTAGATTATGGAACGTAGGAA................................................................................................. 23 3 5 0.20 1 1 0 0
......................................................................................................TATGTAACATGGTCCACTAATAA............................................................ 23 3 5 0.20 1 1 0 0
.................................................................GGGTAGACTATAGAACGTAGGA.................................................................................................. 22 3 6 0.17 1 1 0 0
.........................................................................................................GTAACACGGTCCACTAATT............................................................. 19 2 9 0.11 1 1 0 0
..................................................................TGTAGACTATGGAACGTAGGAT................................................................................................. 22 3 18 0.11 2 2 0 0
.......................................................................ACTATGGAACGTAGGTAT................................................................................................ 18 2 20 0.10 2 2 0 0
......................................................................................................TATGTAACACGGTCCACTCATT............................................................. 22 3 11 0.09 1 1 0 0
.......................................................................ACTATGGAACGTAGGA.................................................................................................. 16 1 20 0.05 1 1 0 0

Anti-sense strand reads

GCGGTCGAAGTCCCTGTTCCGGGTCCAGAGATCCCCAGTTGCGGCAAGGTACCAAGGACGTCTCCACCATCTGATACCTTGCATCCGCAATACAAAGACTGGATACATTGTACCAGGTGATTGAGAGTCATAGGTTAGGCAGGAGCCTCCCGTGGGGCCTCCACAATGGTTGTCGCTCCTTCTCT
***********************************************(((...(((.((((..(((.(((((((..(((((((((.........)).)))))))..))))))).)))..)))))))...)))...**************************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:47 PM