ID:

rno-mir-378b

 Coordinate:

chr5:5575616-5575699 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.0 -31.9 -31.6 -31.6
mature
  1. chr18:56726153-56726171 -
  2. chr5:5575671-5575689 -
star

Sense Strand Reads

ATGCTGGAGTTCTGAATAAACACATTTTCTTGGGTTATATATATCTGCACAGGAGAACAGTGGACTTGGAGTCAGAAGGTCTGTGTGGAACTGGGCCTCCGACATGGACTATCACTGACCATGATTCCATTCCGAAGGATGAGAATCATTACAGCTTCTGACAGAATTTTTGTGGCTGTTATGA
***********************************.((.....((......(((.....(((((.(((..(((((..((((((((((((........))).)))))))))....)))))..))).)))))))).......)).....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528818
Adult_testes_Mili_IP		 GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
..........................................................ACTGGACTTGGAGTCAGAAGGTCG...................................................................................................... 24 2 2 71.00 142 142 0 0
..........................................................ACTGGACTTGGAGTCAGAAGGT........................................................................................................ 22 1 2 35.00 70 0 42 28
..........................................................ACTGGACTTGGAGTCAGAAGGTA....................................................................................................... 23 2 3 12.33 37 0 35 2
............................................................TGGACTTGGAGTCAGAAGGTCG...................................................................................................... 22 1 1 6.00 6 6 0 0
.............................................................GGACTTGGAGTCAGAAGGTCG...................................................................................................... 21 1 1 6.00 6 6 0 0
...........................................................CTGGACTTGGAGTCAGAAGGTCG...................................................................................................... 23 2 3 5.33 16 16 0 0
..........................................................GCTGGACTTGGAGTCAGAAGGTCG...................................................................................................... 24 3 4 3.50 14 14 0 0
..........................................................ACTGGACTTGGAGTCAGAAGGTAT...................................................................................................... 24 2 2 3.50 7 0 7 0
...........................................................CTGGACTTGGAGTCAGAAGGT........................................................................................................ 21 1 2 3.00 6 0 3 3
..........................................................ACTGGACTTGGAGTCAGAAGGTAA...................................................................................................... 24 3 5 2.60 13 0 13 0
..........................................................ACTGGACTTGGCGTCAGAAGGTCG...................................................................................................... 24 3 2 2.00 4 4 0 0
..........................................................ACTGGACTTGGAGCCAGAAGGTCG...................................................................................................... 24 3 2 2.00 4 4 0 0
............................................................TGGACTTGGAGTCAGAAGG......................................................................................................... 19 0 2 1.50 3 0 1 2
..........................................................ACTGGACTTGGAGTCAGAAGGTT....................................................................................................... 23 2 4 1.50 6 0 6 0
..........................................................ACTGGACTTGGAGTCAGAAGGTAG...................................................................................................... 24 3 3 1.33 4 1 3 0
..........................................................ATTGGACTTGGAGTCAGAAGG......................................................................................................... 21 1 3 1.33 4 0 0 4
..........................................................AATGGACTTGGAGTCAGAAGGTA....................................................................................................... 23 2 1 1.00 1 0 1 0
..........................................................AGTGGACTTGGAGTCAGAAGGC........................................................................................................ 22 1 2 1.00 2 0 0 2
..........................................................AGTGGACTTGGAGTCAGAAGGT........................................................................................................ 22 0 1 1.00 1 0 1 0
..........................................................AGTGGACTTGGAGTCAGAAGG......................................................................................................... 21 0 1 1.00 1 0 0 1
..........................................................AGTGGACTTGGAGTCAGAAGGA........................................................................................................ 22 1 1 1.00 1 0 0 1
..........................................................AATGGACTTGGAGTCAGAAGG......................................................................................................... 21 1 2 1.00 2 0 0 2
..........................................................AGTGGACTTGGAGTCAGAAG.......................................................................................................... 20 0 1 1.00 1 0 0 1
...........................................................CTGGACTTGGAGTCAGAAGGTTT...................................................................................................... 23 2 3 1.00 3 0 3 0
..........................................................AATGGACTTGGAGTCAGAAGGA........................................................................................................ 22 2 3 0.67 2 0 1 1
..........................................................ACTGGGCTTGGAGTCAGAAGGTAT...................................................................................................... 24 3 3 0.67 2 0 2 0
..........................................................ACTGGACTTGGAGTCAGAAGGTG....................................................................................................... 23 2 3 0.67 2 0 2 0
...............................................................ACTTGGAGTCAGAAGG......................................................................................................... 16 0 3 0.67 2 0 0 2
..........................................................ACTGGACTTGGAGTCAGACGGTCG...................................................................................................... 24 3 3 0.67 2 2 0 0
...........................................................CTGGACTTGGAGTCAGAAGGTA....................................................................................................... 22 2 5 0.60 3 0 3 0
.............................................................GGACTTGGAGTCAGAAGG......................................................................................................... 18 0 2 0.50 1 0 0 1
.........................................................AACTGGACTTGGAGTCAGAAGGT........................................................................................................ 23 2 2 0.50 1 0 0 1
.............................................................GGACTTGGAGTCAGAAGGTT....................................................................................................... 20 1 2 0.50 1 0 0 1
..........................................................ACTGGACTTGGAGTCAGCAGGTCG...................................................................................................... 24 3 2 0.50 1 1 0 0
.........................................................CGCTGGACTTGGAGTCAGAAGGT........................................................................................................ 23 2 2 0.50 1 0 1 0
..........................................................ACTGGACTTGGAGTCAGAAGGTCCG..................................................................................................... 25 2 2 0.50 1 1 0 0
...........................................................CTGGACTTGGAGTCAGAAGGTCT...................................................................................................... 23 1 2 0.50 1 1 0 0
..........................................................ACTGGACTTGGAGCCAGAAGGT........................................................................................................ 22 2 2 0.50 1 0 1 0
..........................................................ACTGGTCTTGGAGTCAGAAGGTCG...................................................................................................... 24 3 2 0.50 1 1 0 0
..........................................................ACTGGACTTGGAGTCAGAAGGTGT...................................................................................................... 24 2 2 0.50 1 0 1 0
.........................................................CACTGGACTTGGAGTCAGAAGGTA....................................................................................................... 24 2 2 0.50 1 0 1 0
..........................................................ACTGGACTTGGAGTAAGAAGGTCG...................................................................................................... 24 3 2 0.50 1 1 0 0
..........................................................AATGGACTTGGAGTCAGAAG.......................................................................................................... 20 1 7 0.43 3 0 0 3
..........................................................ACTGGACTTGGAGCCAGAAGGTAT...................................................................................................... 24 3 3 0.33 1 0 1 0
...........................................................CTGGACTTGGAGTCCGAAGGTCG...................................................................................................... 23 3 3 0.33 1 1 0 0
..........................................................ACTGGAATTGGAGTCAGAAGGTCG...................................................................................................... 24 3 3 0.33 1 1 0 0
..........................................................ACTGGACTTGGAGTCAGAAGGTTT...................................................................................................... 24 2 3 0.33 1 0 1 0
..........................................................AGTGGACTTGGAGTGAGAAGGC........................................................................................................ 22 2 3 0.33 1 0 0 1
...........................................................CTGGACTTGGAGTCAGAAGGTTA...................................................................................................... 23 3 9 0.33 3 0 3 0
..........................................................ACTGGACTTGGAGTCAGAAGGTATT..................................................................................................... 25 3 3 0.33 1 0 1 0
..........................................................ACTGGACTAGGAGTCAGAAGGT........................................................................................................ 22 2 4 0.25 1 0 1 0
..........................................................ATTGGACTTGGAGTCAGAAGGA........................................................................................................ 22 2 4 0.25 1 0 0 1
..........................................................ACTGTACTTGGAGTCAGAAGGT........................................................................................................ 22 2 4 0.25 1 0 0 1
..........................................................ACTGGACTTGGAGACAGAAGGTAT...................................................................................................... 24 3 4 0.25 1 0 1 0
..........................................................ACTGGACTTGGAGTCAGACGGTA....................................................................................................... 23 3 5 0.20 1 0 1 0
..........................................................ACTGTACTTGGAGTCAGAAGGTTT...................................................................................................... 24 3 6 0.17 1 0 0 1
..........................................................ACTGGACTTGTAGTCAGAAGGTA....................................................................................................... 23 3 6 0.17 1 0 1 0
...........................................................CTGGACTTGGAGTAAGAAGGTCG...................................................................................................... 23 3 6 0.17 1 1 0 0
..........................................................GCTGGACTTGGAGTCAGAAGGTA....................................................................................................... 23 3 14 0.14 2 0 2 0
..........................................................ATTGGACTTGGAGTCAGAAG.......................................................................................................... 20 1 7 0.14 1 0 0 1
...........................................................CTGAACTTGGAGTCAGAAGGTCG...................................................................................................... 23 3 8 0.13 1 1 0 0
...........................................................ACGGACTTGGAGTCAGAAGG......................................................................................................... 20 2 10 0.10 1 0 0 1
.............................................................GGACTTGGAGTCAGAA........................................................................................................... 16 0 12 0.08 1 0 0 1
..........................................................AGTAGACTTGGAGTCAGAAGGCT....................................................................................................... 23 3 20 0.05 1 0 1 0

Anti-sense strand reads

TACGACCTCAAGACTTATTTGTGTAAAAGAACCCAATATATATAGACGTGTCCTCTTGTCACCTGAACCTCAGTCTTCCAGACACACCTTGACCCGGAGGCTGTACCTGATAGTGACTGGTACTAAGGTAAGGCTTCCTACTCTTAGTAATGTCGAAGACTGTCTTAAAAACACCGACAATACT
***********************************.((.....((......(((.....(((((.(((..(((((..((((((((((((........))).)))))))))....)))))..))).)))))))).......)).....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:45 PM