ID:

rno-mir-377

 Coordinate:

chr6:133890690-133890761 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.7 -35.0 -34.9

Sense Strand Reads

CTGGAGAAGAGGCACCCTGCGGTACTCTCGGCCTGTGCTGACGTTTGATTCTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTGATGTTGAATCACACAAAGGCAACTTTTGGTTGAGTATCAAAGCCTGCTTGGGGTGGCATTGGGGACAGGATACAAAGTTCTGGG
******************************************.((((((.(((((.(((((((((((.(((((((.(((((.........)).))))))).))).))))))))))).))))).)))))).****************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
............................................................................................TGAATCACACAAAGGCAACTTTT......................................................... 23 0 1 276.00 276 275 1 0
............................................................................................TGAATCACACAAAGGCAACTTTTT........................................................ 24 1 1 92.00 92 92 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGT...................................................... 23 0 1 84.00 84 82 0 2
..............................................................................................AATCACACAAAGGCAACTTTTGG....................................................... 23 0 1 45.00 45 45 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGG....................................................... 22 0 1 40.00 40 39 0 1
...............................................................................................ATCACACAAAGGCAACTTTTGGA...................................................... 23 1 1 32.00 32 31 0 1
...............................................................................................ATCACACAAAGGCAACTTTTGGTAT.................................................... 25 2 1 27.00 27 27 0 0
..............................................................................................AATCACACAAAGGCAACTTTTGGT...................................................... 24 0 1 23.00 23 23 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTA........................................................ 24 1 1 19.00 19 19 0 0
............................................................................................TGAATCACACAAAGGCAACTTT.......................................................... 22 0 1 17.00 17 17 0 0
..............................................................................................AATCACACAAAGGCAACTTTTGGA...................................................... 24 1 1 16.00 16 14 1 1
............................................................................................TGAATCACACAAAGGCAACTTTA......................................................... 23 1 1 10.00 10 10 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGAA..................................................... 24 2 1 10.00 10 10 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGAT..................................................... 24 1 1 9.00 9 8 0 1
...............................................................................................ATCACACAAAGGCAACTTTTGGTT..................................................... 24 0 1 7.00 7 7 0 0
..............................................................................................AATCACACAAAGGCAACTTTTG........................................................ 22 0 1 7.00 7 7 0 0
..........................................................................................AATGAATCACACAAAGGCAACTTTT......................................................... 25 2 1 6.00 6 0 6 0
.............................................................................................GAATCACACAAAGGCAACTTTT......................................................... 22 0 1 6.00 6 6 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGTTTT................................................... 26 2 1 6.00 6 6 0 0
.............................................................................................GAATCACACAAAGGCAACTTTTT........................................................ 23 1 1 5.00 5 5 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGTAA.................................................... 25 2 1 5.00 5 5 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGTA..................................................... 24 1 1 4.00 4 4 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGTT...................................................... 23 1 1 4.00 4 4 0 0
...............................................................................................ATCACACAAAGGCAACTTTTG........................................................ 21 0 1 4.00 4 4 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGAAT.................................................... 25 3 2 4.00 8 8 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGT....................................................... 22 1 1 3.00 3 3 0 0
............................................................................................TGAATCACACACAGGCAACTTTT......................................................... 23 1 1 3.00 3 3 0 0
............................................................................................TGAATCACACAAAGGCAACTTAT......................................................... 23 1 1 3.00 3 3 0 0
...........................................................................................ATGAATCACACAAAGGCAACTT........................................................... 22 1 1 2.00 2 2 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTCT....................................................... 25 2 1 2.00 2 2 0 0
..............................................................................................AATCACACAAAGGCAACTTTTGT....................................................... 23 1 1 2.00 2 2 0 0
.........................................................AGAGGTTGCCCTTGGTGAATTCG............................................................................................ 23 0 1 2.00 2 2 0 0
.................................................................................................CACACAAAGGCAACTTTTGGT...................................................... 21 0 1 2.00 2 2 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTTT....................................................... 25 2 2 2.00 4 4 0 0
..............................................................................................AATCACACAAAGGCCACTTTTGG....................................................... 23 1 1 2.00 2 2 0 0
............................................................................................TGAATCCCACAAAGGCAACTTTT......................................................... 23 1 1 2.00 2 2 0 0
.................................................................................................CACACAAAGGCAACTTTT......................................................... 18 0 1 2.00 2 1 0 1
...............................................................................................ATCACACAAAGGCCACTTTTGGTT..................................................... 24 1 1 2.00 2 2 0 0
.............................................................................................AAATCACACAAAGGCAACTTTTGGT...................................................... 25 1 1 2.00 2 2 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGCAT.................................................... 25 3 1 2.00 2 2 0 0
..............................................................................................AATCACACAAAGGCAACTTTT......................................................... 21 0 1 2.00 2 2 0 0
...............................................................................................ATCACACAAAGGCCACTTTTGGAA..................................................... 24 3 1 2.00 2 2 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGTAAT................................................... 26 3 1 2.00 2 2 0 0
...........................................................................................ATGAATCACACAAAGGCAACTTT.......................................................... 23 1 1 2.00 2 2 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGCA...................................................... 23 2 1 2.00 2 2 0 0
...........................................................................................ATGAATCACACAAAGGCAACTTTT......................................................... 24 1 1 2.00 2 2 0 0
............................................................................................TGAATCACACAAGGGCAACTTTT......................................................... 23 1 1 2.00 2 2 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGA....................................................... 22 1 1 2.00 2 2 0 0
..............................................................................................AATCACACAAAGGCAACCTTTGG....................................................... 23 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGCCAACTTTTGGT...................................................... 23 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCCACTTTTGGA...................................................... 23 2 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGACAACTTTTT........................................................ 24 2 1 1.00 1 1 0 0
.............................................................................................AAATCACACAAAGGCAACTTTTGGA...................................................... 25 2 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGACAACTTTT......................................................... 23 1 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTC......................................................... 23 1 1 1.00 1 1 0 0
..............................................................................................AATCACACAAGGGCAACTTTTGGTA..................................................... 25 2 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGATAT................................................... 26 3 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTTAT...................................................... 26 2 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTTA....................................................... 25 2 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGTTT.................................................... 25 1 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTC........................................................ 24 1 1 1.00 1 1 0 0
...............................................................................................ATCCCACAAAGGCAACTTTTGGTTTA................................................... 26 2 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTT......................................................... 20 0 1 1.00 1 1 0 0
............................................................................................TGGCTCACACAAAGGCAACTTTT......................................................... 23 2 1 1.00 1 1 0 0
...........................................................................................TTCAATCACACAAAGGCAACTTTT......................................................... 24 1 1 1.00 1 1 0 0
................................................................................................TCACACAAAGGCAACTTTTGA....................................................... 21 1 1 1.00 1 1 0 0
................................................................................................TCACACAAAGGCAACTTTTGGGTT.................................................... 24 2 1 1.00 1 1 0 0
..............................................................................................AATCACACAAAGGCAACTTTTGGC...................................................... 24 1 1 1.00 1 1 0 0
...........................................................................................ATGCATCACACAAAGGCAACTTTT......................................................... 24 2 1 1.00 1 1 0 0
...............................................................................................ATCCCACAAAGGCAACTTTTGGTA..................................................... 24 2 1 1.00 1 1 0 0
............................................................................................TGACTCACACAAAGGCAACTTTTT........................................................ 24 2 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTT........................................................... 21 0 1 1.00 1 1 0 0
........................................................................................AAAATGAATCACACAAAGGCAACTTTT......................................................... 27 3 1 1.00 1 1 0 0
............................................................................................TGACTCACGCAAAGGCAACTTTT......................................................... 23 2 1 1.00 1 1 0 0
...............................................................................................ATCCCACAAAGGCAACTTTTGGTTTT................................................... 26 3 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTAT....................................................... 25 2 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAATGCAACTTTT......................................................... 23 1 1 1.00 1 1 0 0
..............................................................................................AATCACACAAAGGTAACTTTTGGA...................................................... 24 2 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTG........................................................ 24 0 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAACGCAACTTTT......................................................... 23 1 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTTC....................................................... 25 2 1 1.00 1 1 0 0
............................................................................................TGAATCACCCAAAGGCAACTTAT......................................................... 23 2 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGTCAACTTTTGGT...................................................... 23 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCGACTTTTGGTAA.................................................... 25 3 1 1.00 1 1 0 0
............................................................................................TGAATCACCCAAAGGCAACTTTTT........................................................ 24 2 1 1.00 1 1 0 0
...............................................................................................ATCACACAAGGGCAACTTTTGGTA..................................................... 24 2 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCCACTTTTGGT...................................................... 23 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGTATT................................................... 26 3 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGTA...................................................... 23 2 2 1.00 2 2 0 0
..............................................................................................AATCACACAAAGGCAACTTTTGTT...................................................... 24 1 1 1.00 1 1 0 0
...............................................................................................CTCCCACAAAGGCAACTTTTGGTT..................................................... 24 2 1 1.00 1 1 0 0
..............................................................................................AATCACACAAAGGCAACTCTTG........................................................ 22 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGC...................................................... 23 1 1 1.00 1 1 0 0
.................................................................................................CACACAAGGGCAACTTTTGG....................................................... 20 1 1 1.00 1 1 0 0
............................................................................................TGAATCACACCAAGGCAACTTTT......................................................... 23 1 1 1.00 1 1 0 0
.............................................................................................GAATCACACAAAGGCAACTTTTA........................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCACCTTTTGGTAA.................................................... 25 3 1 1.00 1 1 0 0
.........................................................AGAGGTTGCCCTTGGTGAATTCGT........................................................................................... 24 1 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGCCAACTTTT......................................................... 23 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTGG........................................................ 21 1 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTTAAT...................................................... 26 2 1 1.00 1 1 0 0
..............................................................................................AATCACACAAGGGCAACTTTTGG....................................................... 23 1 1 1.00 1 1 0 0
............................................................................................TGAATCACACAGAGGCAACTTTT......................................................... 23 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTATGGT...................................................... 23 1 1 1.00 1 1 0 0
...........................................................................................TTGAATCACACAAAGGCAACTTTTT........................................................ 25 1 1 1.00 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGGTT.................................................... 25 2 1 1.00 1 1 0 0
..............................................................................................TATCACACAAAGGCAACTTTTGG....................................................... 23 1 1 1.00 1 1 0 0
.........................................................AGAGGTTGCCCCTGGTGAATTCAA........................................................................................... 24 3 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGGCAACTTTAA........................................................ 24 2 2 1.00 2 2 0 0
..............................................................................................AATCACACAAGGGCAACTTTTGGA...................................................... 24 2 1 1.00 1 1 0 0
...............................................................................................ATCACACACAGGCAACTTTTGG....................................................... 22 1 1 1.00 1 1 0 0
................................................................................................TCACACAAAGGCAACTTTTGGAT..................................................... 23 1 1 1.00 1 1 0 0
............................................................................................TGACTCACACAAAGGCAACTTTT......................................................... 23 1 1 1.00 1 1 0 0
.............................................................................................GAATCACACAAAGGCAACTTT.......................................................... 21 0 1 1.00 1 1 0 0
............................................................................................TGAATCACACAAAGCCAACTTTTT........................................................ 24 2 2 0.50 1 1 0 0
............................................................................................GGAATCACACAAAGGCAACTTTTAA....................................................... 25 3 2 0.50 1 1 0 0
...............................................................................................ATCACACAAAGGCACCTTTTGAT...................................................... 23 2 2 0.50 1 1 0 0
.............................................................................................GCATCACACAAAGGCAACTTTTA........................................................ 23 2 2 0.50 1 1 0 0
...............................................................................................ATCACACAAAGGCACCTTTTGGA...................................................... 23 2 2 0.50 1 1 0 0
............................................................................................TGACTCACACAGAGGCAACTTTT......................................................... 23 2 2 0.50 1 1 0 0
............................................................................................TGAATCACACAAAGGCCACTTTT......................................................... 23 1 2 0.50 1 1 0 0
...............................................................................................ATCACACAAAGGCAACTTTTGGAAC.................................................... 25 3 2 0.50 1 1 0 0
............................................................................................TGACTCACACAAAGGCCACTTTT......................................................... 23 2 3 0.33 1 1 0 0
.............................................................................................AAATCACACAAAGGCAACTTTTGGAA..................................................... 26 3 3 0.33 1 1 0 0
...............................................................................................ATCACACAAACGCAACTTTTGGAA..................................................... 24 3 4 0.25 1 1 0 0
...............................................................................................ATCACACACAGGCAACTTTTGT....................................................... 22 2 5 0.20 1 1 0 0
.................................................................................................CACACAAAGGCAACTTTTT........................................................ 19 1 5 0.20 1 1 0 0
...............................................................................................ATGCCACAAAGGCCACTTTTGGT...................................................... 23 3 9 0.11 1 1 0 0
............................................................................................TGACTCACCCAAAGGCAACTTTA......................................................... 23 3 10 0.10 1 1 0 0
..................................................................................................ACACAAAGGCAACTTTTT........................................................ 18 1 17 0.06 1 1 0 0
.........................................................................................TTTTGGATCACACAAAGGCAAT............................................................. 22 3 20 0.05 1 1 0 0

Anti-sense strand reads

GACCTCTTCTCCGTGGGACGCCATGAGAGCCGGACACGACTGCAAACTAAGAACTCGTCTCCAACGGGAACCACTTAAGCGAAATAACTACAACTTAGTGTGTTTCCGTTGAAAACCAACTCATAGTTTCGGACGAACCCCACCGTAACCCCTGTCCTATGTTTCAAGACCC
******************************************.((((((.(((((.(((((((((((.(((((((.(((((.........)).))))))).))).))))))))))).))))).)))))).****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:48 PM