ID:

rno-mir-376c

 Coordinate:

chr6:133872439-133872522 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.0 -26.7 -26.7

Sense Strand Reads

TCATTTCTGACGGATTAGGCCTCGGCTCTTTCTCTTCAGGACTAGATCTTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGGTATTTATGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGCTGGGAAATGGGCCTGAACTGAAGCCACCATCAGGGCAGTGACA
**************************************************((((((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).))))))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.....................................................................................................AACATAGAGGAAATTTCACGT.............................................................. 21 0 1 351.00 351 339 12
.....................................................................................................AACATAGAGGAAATTTCACGTT............................................................. 22 0 1 42.00 42 41 1
.....................................................................................................AACATAGAGGAAATTTCACGTAA............................................................ 23 2 1 36.00 36 36 0
.....................................................................................................AACATAGAGGAAATTTCACGTTT............................................................ 23 0 1 33.00 33 33 0
.....................................................................................................AACATGGAGGAAATTTCACGT.............................................................. 21 1 1 27.00 27 27 0
.....................................................................................................AACATAGAGGAAATTTCACGTTA............................................................ 23 1 1 16.00 16 16 0
.....................................................................................................AACATAGAGGAAATTTCACG............................................................... 20 0 1 14.00 14 14 0
.....................................................................................................AACATAGAGGAAATTTCACGTA............................................................. 22 1 1 10.00 10 10 0
................................................................GTGGATATTCCTTCTATGGTTAT................................................................................................. 23 1 2 9.00 18 18 0
.....................................................................................................AACATAGAGGAAATTTCACGTAT............................................................ 23 1 1 7.00 7 7 0
......................................................................................................ACATAGAGGAAATTTCACGT.............................................................. 20 0 1 5.00 5 5 0
.....................................................................................................AACATAGAGGACATTTCACGT.............................................................. 21 1 1 4.00 4 4 0
.....................................................................................................AACATGGAGGAAATTTCACGTT............................................................. 22 1 1 3.00 3 3 0
.....................................................................................................AACATAGAGGAAAATTCACGT.............................................................. 21 1 1 3.00 3 3 0
.....................................................................................................AACATAGAGGAAATTTCA................................................................. 18 0 1 3.00 3 3 0
....................................................................................................AAACATAGAGGAAATTTCACGT.............................................................. 22 0 1 3.00 3 2 1
.....................................................................................................AACATAGAGGAAATTTCACGTG............................................................. 22 1 1 3.00 3 3 0
.....................................................................................................AACATAGAGGAAACTTCACGT.............................................................. 21 1 1 2.00 2 2 0
.......................................................................................................CATAGAGGAAATTTCACGT.............................................................. 19 0 1 2.00 2 2 0
.....................................................................................................AACATAGAGGAAATTTCACGTTTTT.......................................................... 25 1 1 2.00 2 2 0
......................................................................................................ACATAGAGGAAATTTCACGTT............................................................. 21 0 1 2.00 2 2 0
.....................................................................................................AACATAGAGGAAATTTCACGTAAT........................................................... 24 2 1 2.00 2 2 0
.....................................................................................................AACATAGAGGAAACTTCACGTA............................................................. 22 2 1 2.00 2 2 0
.....................................................................................................AACATAGAGGGAATTTCACGT.............................................................. 21 1 1 2.00 2 2 0
.....................................................................................................AACATAGAGGAAATTTCACGA.............................................................. 21 1 1 2.00 2 1 1
........................................................................................................ATAGAGGAAATTTCACGTTA............................................................ 20 1 1 2.00 2 2 0
.....................................................................................................AACATGGAGGAAATTTCACGTA............................................................. 22 2 1 2.00 2 2 0
.....................................................................................................AACATAGAGGAAATTTCACGC.............................................................. 21 1 1 2.00 2 2 0
.....................................................................................................AACATGGAGGAAATTTCACGTAT............................................................ 23 2 1 2.00 2 2 0
.....................................................................................................AACATAGAGGAAATTTCACGTTAT........................................................... 24 1 1 2.00 2 2 0
....................................................................................................AAACATAGAGGAAATTTCACGTT............................................................. 23 0 1 2.00 2 2 0
.....................................................................................................AACATAGAGGCAATTTCACGT.............................................................. 21 1 1 2.00 2 2 0
.....................................................................................................AACATAGAGGAAATTTCACGTGA............................................................ 23 2 1 1.00 1 1 0
.....................................................................................................AACATAGAAGAAATTTCACGT.............................................................. 21 1 1 1.00 1 1 0
......................................................................................................ACATAGAGGAAATTTCACGTTAA........................................................... 23 2 1 1.00 1 1 0
...................................................................................................AAAACATAGAGGAAATTTCACGT.............................................................. 23 1 1 1.00 1 1 0
......................................................................................................ACATAGAGGAAATTTCCCG............................................................... 19 1 1 1.00 1 1 0
.....................................................................................................AACATAGAGGAAATTTCAC................................................................ 19 0 1 1.00 1 0 1
.....................................................................................................AACAAAGAGGAAATTTCACGT.............................................................. 21 1 1 1.00 1 1 0
....................................................................................................AAACATAGAGGAAATTTCACGTA............................................................. 23 1 1 1.00 1 1 0
.....................................................................................................AACATAGAGGAAATTTCACGTTG............................................................ 23 1 1 1.00 1 1 0
.....................................................................................................AACATAGAGGAAATTTCACATT............................................................. 22 1 1 1.00 1 1 0
......................................................................................................ACATAGAGGAAATTTCAC................................................................ 18 0 1 1.00 1 0 1
....................................................................................................AAACATAGAGGAAATTTCCCGT.............................................................. 22 1 1 1.00 1 1 0
.....................................................................................................TACATAGAGGAGATTTCACGTTGT........................................................... 24 3 1 1.00 1 1 0
.....................................................................................................AACATAGAGGAAATATCACGT.............................................................. 21 1 1 1.00 1 1 0
................................................................GTGGATTTTCCTTCTATGTTTA.................................................................................................. 22 1 1 1.00 1 1 0
.....................................................................................................AACATAGAGGAAATTTCACGTCA............................................................ 23 2 1 1.00 1 1 0
.....................................................................................................AACATAGTGGAAATTTCACGT.............................................................. 21 1 1 1.00 1 1 0
.....................................................................................................AACATAAAGGAAATTTCACGT.............................................................. 21 1 1 1.00 1 1 0
......................................................................................................ACATAGAGGAAATTTCACGTA............................................................. 21 1 1 1.00 1 1 0
.....................................................................................................AACATAGAGGAAATCTCACGT.............................................................. 21 1 1 1.00 1 0 1
...................................................................................................TAAACATAGAGGAAATTTCACGT.............................................................. 23 0 1 1.00 1 1 0
.....................................................................................................AACATAGCGGAAATTTCACGT.............................................................. 21 1 1 1.00 1 1 0
.................................................................TGGATATTCCTTCTATGTTT................................................................................................... 20 0 1 1.00 1 1 0
.....................................................................................................AACATAGAGGAAATTTGACGT.............................................................. 21 1 1 1.00 1 1 0
.....................................................................................................AACATGGAGGAAATTTCACGTTT............................................................ 23 1 1 1.00 1 1 0
........................................................................................................ATAGAGGAAATTTCACGT.............................................................. 18 0 1 1.00 1 0 1
.....................................................................................................CACATAGAGGAAATTTCACGT.............................................................. 21 1 1 1.00 1 1 0
.....................................................................................................AAACTAGAGGAAATTTCACGTT............................................................. 22 2 1 1.00 1 1 0
......................................................................................................ACATGGAGGAAATTTCACGTTT............................................................ 22 1 1 1.00 1 1 0
......................................................................................................ACATAGAGGAAATTTCACG............................................................... 19 0 1 1.00 1 1 0
................................................................GTGGATATTCCTTCTATGTTTA.................................................................................................. 22 0 1 1.00 1 1 0
......................................................................................................ACATAGAGGAAATTTCACGTAG............................................................ 22 2 2 0.50 1 1 0
................................................................GTGGATATTCCTTCTATGGTTATTA............................................................................................... 25 3 2 0.50 1 1 0
.................................................................TGGATATTCCTTCTATGGTTAT................................................................................................. 22 1 2 0.50 1 1 0
................................................................GTGGATCTTCCTTCTATGGTTAT................................................................................................. 23 2 2 0.50 1 1 0
.....................................................................................................AACATAGACGAAATTTCACGTAA............................................................ 23 3 2 0.50 1 1 0
................................................................GTGGATATTCTTTCTATGGTTAT................................................................................................. 23 2 2 0.50 1 1 0
................................................................GTGGATATTCCTTATATGGTTAT................................................................................................. 23 2 2 0.50 1 1 0
.....................................................................................................AACATGGAGGAAATTTCACGTAA............................................................ 23 3 4 0.50 2 2 0
................................................................GTGGATATTCCTTCAATGGTTAT................................................................................................. 23 2 2 0.50 1 1 0
................................................................GTGGATTTTCCTTCTATGGTTAT................................................................................................. 23 2 3 0.33 1 1 0
.....................................................................................................AACATAGAGGAAATTTCACGTAGA........................................................... 24 3 3 0.33 1 1 0
.....................................................................................................AACATAGAGGAGATTTCACGTAA............................................................ 23 3 3 0.33 1 1 0
.....................................................................................................AACATAGAGGACATTTCACGTAA............................................................ 23 3 3 0.33 1 1 0
.....................................................................................................AACATGGAGGAAATATCACGT.............................................................. 21 2 4 0.25 1 1 0
........................................................................................................ATAGAGGAAATATCACGT.............................................................. 18 1 4 0.25 1 1 0
.....................................................................................................AACATGGAGGCAATTTCACG............................................................... 20 2 4 0.25 1 1 0
.....................................................................................................AACATAGAGGAAATTTCACGTAAA........................................................... 24 3 4 0.25 1 1 0
.....................................................................................................AACATAGAGGATATTTCACGTAA............................................................ 23 3 5 0.20 1 1 0
...................................................................................................GTAACATAGAGGAAATTTCAC................................................................ 21 2 5 0.20 1 1 0
.....................................................................................................AACATGGAGGAAATTTCAAGT.............................................................. 21 2 11 0.09 1 1 0

Anti-sense strand reads

AGTAAAGACTGCCTAATCCGGAGCCGAGAAAGAGAAGTCCTGATCTAGAAAACCATAAATTTTCCACCTATAAGGAAGATACAAATACCATAAATACTAATTTGTATCTCCTTTAAAGTGCAAAAGTCACAGTTTACGACGACCCTTTACCCGGACTTGACTTCGGTGGTAGTCCCGTCACTGT
***********************************************((((((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:47 PM