ID:

rno-mir-376b

 Coordinate:

chr6:133873095-133873180 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.7 -34.4 -34.4

Sense Strand Reads

TTCAGATGAGCCAAGCAGCAAGACTGGTCCTTCCCGGAAGTCAGTCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTTCAGTATCAAATGTCGCTCTGGAACTATTTCTGGAAGATTCTGTAGGGTCTGGGTGGGGGA
**************************************************(((((((((.(((((((((((.(((((.(((((((((.............)))))))))))))).))))))))))).)))))))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
......................................................................................................ATCATAGAGGAACATCCACTT............................................................... 21 0 1 144.00 144 141 3
......................................................................................................ATCATAGAGGAACATCCACTTT.............................................................. 22 0 1 83.00 83 81 2
.................................................................GTGGATATTCCTTCTATGGTTA................................................................................................... 22 0 1 65.00 65 62 3
.................................................................GTGGATATTCCTTCTATGGTT.................................................................................................... 21 0 1 44.00 44 42 2
......................................................................................................ATCATAGAGGAACATCCACTTTT............................................................. 23 0 1 26.00 26 26 0
......................................................................................................ATCATAGAGGAACATCCACTTAA............................................................. 23 2 1 23.00 23 23 0
......................................................................................................ATCATAGAGGAACATCCACTTA.............................................................. 22 1 1 21.00 21 21 0
......................................................................................................ATCATAGAGGAACATCCACTTTA............................................................. 23 1 1 16.00 16 16 0
......................................................................................................ATCATAGAGGAACATCCACTTAAA............................................................ 24 3 1 16.00 16 16 0
.................................................................GTGGATATTCCTTCTATGGTTAA.................................................................................................. 23 1 1 13.00 13 13 0
......................................................................................................ATCATGGAGGAACATCCACTTTA............................................................. 23 2 1 12.00 12 12 0
......................................................................................................ATCATGGAGGAACATCCACTT............................................................... 21 1 1 12.00 12 12 0
......................................................................................................ATCATAGAGGAACATCCACTTTAA............................................................ 24 2 1 11.00 11 11 0
......................................................................................................ATCATGGAGGAACATCCACTTT.............................................................. 22 1 1 10.00 10 10 0
.................................................................GTGGATATTCCTTCTATGGTTAT.................................................................................................. 23 1 2 9.00 18 18 0
......................................................................................................ATCATAGAGGAACATCCACT................................................................ 20 0 1 8.00 8 8 0
......................................................................................................ATCATAGAGGAACATCCACTTTTT............................................................ 24 0 1 7.00 7 7 0
..................................................................TGGATATTCCTTCTATGGTTA................................................................................................... 21 0 1 5.00 5 4 1
......................................................................................................ATCATAGAGGAACATCCACTTAT............................................................. 23 1 1 5.00 5 5 0
.................................................................GTGGATCTTCCTTCTATGGTTA................................................................................................... 22 1 1 4.00 4 4 0
...................................................................................................ATCATCATAGAGGAACATCCACTTT.............................................................. 25 1 1 4.00 4 4 0
.......................................................................................................TCATGGAGGAACATCCACTTTA............................................................. 22 2 1 3.00 3 3 0
.......................................................................................................TCATAGAGGAACATCCACTTAT............................................................. 22 1 1 3.00 3 3 0
................................................................GGTGGATATTCCTTCTATGGT..................................................................................................... 21 0 1 3.00 3 3 0
...................................................................................................ATAATCATAGAGGAACATCCACTT............................................................... 24 0 1 3.00 3 3 0
.................................................................GTGGATTTTCCTTCTATGGTT.................................................................................................... 21 1 1 3.00 3 3 0
......................................................................................................ATCATAGAGGAACCTCCACTT............................................................... 21 1 1 3.00 3 3 0
....................................................................................................TTATCATAGAGGAACATCCA.................................................................. 20 1 1 3.00 3 3 0
......................................................................................................ATCATAGAGGAACATCCACTTTAG............................................................ 24 2 1 3.00 3 3 0
......................................................................................................ATCATGGAGGAACATCCACTTTAA............................................................ 24 3 3 2.33 7 7 0
......................................................................................................ATCATAGAGGAACATCCACTTTTA............................................................ 24 1 1 2.00 2 2 0
......................................................................................................ATCCTAGAGGAACATCCACTTT.............................................................. 22 1 1 2.00 2 2 0
.................................................................GTGGATATTCCTTCTATGGTTC................................................................................................... 22 1 1 2.00 2 2 0
......................................................................................................ATCATGGAGGAACATCCACT................................................................ 20 1 1 2.00 2 2 0
......................................................................................................ATCATAGAGGAACATCCACTTC.............................................................. 22 1 1 2.00 2 2 0
.................................................................GTGGATATTCCTTCTATGG...................................................................................................... 19 0 1 2.00 2 2 0
......................................................................................................ATCATAGAGGAACCTCCACTTTT............................................................. 23 1 1 2.00 2 2 0
......................................................................................................ATCATAGAGGCACATCCACTT............................................................... 21 1 1 2.00 2 2 0
..................................................................TGGATATTCCTTCTATGGTTACG................................................................................................. 23 0 1 2.00 2 2 0
......................................................................................................ATCATAGAGGAACATCCACTC............................................................... 21 1 1 2.00 2 2 0
.....................................................................................................AATCATAGAGGAACATCCACTT............................................................... 22 0 1 2.00 2 2 0
......................................................................................................ATCATGGAGGAACATCCATTTTT............................................................. 23 2 1 2.00 2 2 0
......................................................................................................CTCATAGAGGAACATCCACTTTA............................................................. 23 2 1 2.00 2 2 0
.....................................................................................................TATCATAGCGGAACATCCACTT............................................................... 22 2 1 2.00 2 2 0
..................................................................TGGATATTCCTTCTATGGTT.................................................................................................... 20 0 1 2.00 2 2 0
......................................................................................................ATCATAGAGGAACATCCACTTTAAT........................................................... 25 3 2 1.50 3 3 0
....................................................................................................TAATCATAGAGGAACATCCACT................................................................ 22 0 1 1.00 1 1 0
......................................................................................................ATCATGGAGGAACATCCACTTAT............................................................. 23 2 1 1.00 1 1 0
.................................................................GTGGATATTCCTTCTATGGTTT................................................................................................... 22 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAATATCCACTT............................................................... 21 1 1 1.00 1 1 0
.................................................................GTGGATCTTCCTTCTATGGTT.................................................................................................... 21 1 1 1.00 1 1 0
......................................................................................................ATCATCGAGGAACATCCACTTAT............................................................. 23 2 1 1.00 1 1 0
.................................................................GAGGATATTCCTTCTATGGTT.................................................................................................... 21 1 1 1.00 1 1 0
.................................................................GTGGATATTCCTTCTATTGTT.................................................................................................... 21 1 1 1.00 1 1 0
.................................................................GTGGATTTTCCTTCTATGGTTA................................................................................................... 22 1 1 1.00 1 1 0
....................................................................................................AAATCATGGAGGAACATCCACTTTAT............................................................ 26 3 1 1.00 1 1 0
.................................................................GTGGATATTCCTTATATGGTT.................................................................................................... 21 1 1 1.00 1 1 0
...................................................................................................ATAATCATAGAGGAACATCCACTAAA............................................................. 26 3 1 1.00 1 1 0
.....................................................................................................AATCATAGAGGAAAATCCACTT............................................................... 22 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACTTCCACTT............................................................... 21 1 1 1.00 1 1 0
..................................................................TGGATATTCCTTCTATGGTTACGT................................................................................................ 24 0 1 1.00 1 1 0
......................................................................................................ATCATAGAGGACCATCCACTT............................................................... 21 1 1 1.00 1 1 0
.......................................................................................................TCATAGAGGAACATCCACTTT.............................................................. 21 0 1 1.00 1 1 0
.................................................................GTGGATATTCATTCTATGGTT.................................................................................................... 21 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGCACATCCAC................................................................. 19 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCCCTT............................................................... 21 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTTGT............................................................. 23 1 1 1.00 1 1 0
......................................................................................................ATCATATAGGAACATCCACTT............................................................... 21 1 1 1.00 1 1 0
......................................................................................................CTCATAGAGGAACATCCACTT............................................................... 21 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTA............................................................... 21 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGGACATCCACTTT.............................................................. 22 1 1 1.00 1 1 0
............................................................................................................GAGGAACATCCACTTTT............................................................. 17 0 1 1.00 1 1 0
...................................................................GGATATTCCTTCTATGGTTA................................................................................................... 20 0 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCATTTT.............................................................. 22 1 1 1.00 1 1 0
........................................................................................................CATGGAGGAACATCCACTTTAT............................................................ 22 2 1 1.00 1 1 0
.......................................................................................................TCATAGAGGAACATCCACTTTTG............................................................ 23 1 1 1.00 1 1 0
.................................................................GTGGATCTTCCTTCTATGGT..................................................................................................... 20 1 1 1.00 1 0 1
.................................................................ATGGATATTCCTTCTATGGTTA................................................................................................... 22 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTCT.............................................................. 22 1 1 1.00 1 1 0
......................................................................................................ATCATAGCGGAACATCCACTTT.............................................................. 22 1 1 1.00 1 1 0
.....................................................................................................AATCATAGAGGAACATCCACTTAA............................................................. 24 2 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCATTTTAT............................................................ 24 2 1 1.00 1 1 0
.................................................................GTGGATATTCCCTCTATGGTT.................................................................................................... 21 1 1 1.00 1 1 0
..................................................................TGGATATTCCTTCTATGGTTAC.................................................................................................. 22 0 1 1.00 1 1 0
......................................................................................................ATCATAGAGGATCATCCACTTT.............................................................. 22 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTAA.............................................................. 22 2 1 1.00 1 1 0
......................................................................................................ATCATGGAGGAACCTCCACTTT.............................................................. 22 2 1 1.00 1 1 0
...................................................................................................ATAATCATAGAGGAACATCCAATT............................................................... 24 1 1 1.00 1 1 0
.................................................................GTGGATATTCCTACTATGGTTA................................................................................................... 22 1 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTTAAG............................................................ 24 3 2 1.00 2 2 0
.....................................................................................................AATCATAGAGGAACATCCACTTT.............................................................. 23 0 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTTAATT........................................................... 25 3 1 1.00 1 1 0
.................................................................GTGGATATTACTTCTATGGTTA................................................................................................... 22 1 1 1.00 1 1 0
..................................................................AGGATATTCCTTCTATGGTTA................................................................................................... 21 1 1 1.00 1 1 0
......................................................................................................ATCATGGCGGAACATCCACTTT.............................................................. 22 2 1 1.00 1 1 0
.......................................................................................................TCATAGAGGAACATCCACTTATT............................................................ 23 1 1 1.00 1 1 0
.................................................................GAGGATATTCCTTCTATGGTTA................................................................................................... 22 1 1 1.00 1 1 0
.................................................................GTGGATATTCCTTCTATGGT..................................................................................................... 20 0 1 1.00 1 1 0
......................................................................................................ATCATGGAGGAACATCCACTTA.............................................................. 22 2 1 1.00 1 1 0
................................................................GGTGGATATTCCTTCTATGGTT.................................................................................................... 22 0 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACCTCCACTTTA............................................................. 23 2 1 1.00 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTTTTTT........................................................... 25 1 1 1.00 1 1 0
.........................................................................................................ATAGAGGAACATCCACTTAAT............................................................ 21 2 5 0.80 4 4 0
......................................................................................................ATCATGGAGGAACATCCACTAT.............................................................. 22 2 3 0.67 2 2 0
......................................................................................................ATCATGGAGGAACATCCACTTAA............................................................. 23 3 9 0.56 5 5 0
......................................................................................................ATCATAGAGGAACCTCCACTTA.............................................................. 22 2 2 0.50 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTTCAC............................................................ 24 3 2 0.50 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTAC.............................................................. 22 2 2 0.50 1 1 0
.................................................................GTGGATATTCCTTCAATGGTTAT.................................................................................................. 23 2 2 0.50 1 1 0
.......................................................................................................TCATAGAGGAACATCCACTTAATT........................................................... 24 3 2 0.50 1 1 0
.................................................................GTGGATATTCCTTATATGGTTAT.................................................................................................. 23 2 2 0.50 1 1 0
..................................................................TGGATATTCCTTCTATGGTTAT.................................................................................................. 22 1 2 0.50 1 1 0
......................................................................................................ATCATAGAGGAACATCCACTCCAT............................................................ 24 3 2 0.50 1 1 0
......................................................................................................ATCATAGAGGCACATCCACTTTAA............................................................ 24 3 2 0.50 1 1 0
.................................................................GTGGATATTCCTTCTATGGTTATTA................................................................................................ 25 3 2 0.50 1 1 0
......................................................................................................ATCATGGAGGCACATCCACTTT.............................................................. 22 2 2 0.50 1 1 0
.................................................................GTGGATATTCTTTCTATGGTTAT.................................................................................................. 23 2 2 0.50 1 1 0
.................................................................GTGGATCTTCCTTCTATGGTTAT.................................................................................................. 23 2 2 0.50 1 1 0
......................................................................................................ATCATGGAGGAACATCCACTTTAG............................................................ 24 3 2 0.50 1 1 0
......................................................................................................AACATAGAGGAACATCCACTTTAA............................................................ 24 3 3 0.33 1 1 0
.................................................................GTGGATTTTCCTTCTATGGTTAT.................................................................................................. 23 2 3 0.33 1 1 0
......................................................................................................ATCATGGAGGAACATCCACTTAG............................................................. 23 3 4 0.25 1 1 0

Anti-sense strand reads

AAGTCTACTCGGTTCGTCGTTCTGACCAGGAAGGGCCTTCAGTCAGGAAGAAACCATAAATTTTCCACCTATAAGGAAGATACCAATGCACGAAGGACCTATTAGTATCTCCTTGTAGGTGAAAAAGTCATAGTTTACAGCGAGACCTTGATAAAGACCTTCTAAGACATCCCAGACCCACCCCCT
************************************************(((((((((.(((((((((((.(((((.(((((((((.............)))))))))))))).))))))))))).)))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:47 PM