ID:

rno-mir-376a

 Coordinate:

chr6:133873605-133873686 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.4 -24.9 -24.9

Sense Strand Reads

TTCCATCGACGCAAGCACAAGTTCGAGGCCTCCTGGATCGAGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTGGGAAACCACCGAGGACAAGACGTCATCATGGAAGAAAGC
**********************************************..(((((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).)))))))))..********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
....................................................................................................ATCGTAGAGGAAAATCCACGT............................................................. 21 0 1 397.00 397 382 13 2
....................................................................................................ATCGTAGAGGAAAATCCACGTT............................................................ 22 0 1 196.00 196 193 3 0
....................................................................................................ATCGTAGAGGAAAATCCACGTTT........................................................... 23 0 1 149.00 149 148 1 0
....................................................................................................ATCGTAGAGGAAAATCCACGTTA........................................................... 23 1 1 63.00 63 63 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTAA........................................................... 23 2 1 62.00 62 62 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTAT........................................................... 23 1 1 40.00 40 40 0 0
....................................................................................................ATCGTAGAGGAAAATCCACG.............................................................. 20 0 1 28.00 28 24 4 0
....................................................................................................ATCGTAGAGGAAAATCCAC............................................................... 19 0 1 24.00 24 22 2 0
....................................................................................................ATCGTAGAGGAAAATCCACGTA............................................................ 22 1 1 19.00 19 19 0 0
...................................................................................................AATCGTAGAGGAAAATCCACGT............................................................. 22 0 1 18.00 18 18 0 0
.....................................................................................................TCGTAGAGGAAAATCCACGTT............................................................ 21 0 1 13.00 13 13 0 0
.............................................................AGGTAGATTCTCCTTCTATGAGT.................................................................................................. 23 0 1 11.00 11 11 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTAAA.......................................................... 24 3 1 9.00 9 9 0 0
....................................................................................................ATCGTAGAGGAAAATCCA................................................................ 18 0 1 9.00 9 8 1 0
..............................................................GGTAGATTCTCCTTCTATGAGT.................................................................................................. 22 0 1 7.00 7 6 1 0
...................................................................................................AATCGTAGAGGAAAATCCACGTT............................................................ 23 0 1 6.00 6 4 0 2
....................................................................................................ATCGTAGAGGAAAATCCACGTTTT.......................................................... 24 0 1 6.00 6 5 1 0
.............................................................AGGTAGATTCTCCTTCTATGAGTCG................................................................................................ 25 2 1 5.00 5 0 0 5
....................................................................................................ATCGTAGAGGAAAATCCACGTTAA.......................................................... 24 2 1 5.00 5 5 0 0
....................................................................................................ATCGTAGAGGAAACTCCACGTTT........................................................... 23 1 1 5.00 5 5 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTTTA.......................................................... 24 1 1 5.00 5 5 0 0
....................................................................................................ATCGTAGAGGAAACTCCACGT............................................................. 21 1 1 4.00 4 4 0 0
......................................................................................................CGTAGAGGAAAATCCACGTT............................................................ 20 0 1 4.00 4 4 0 0
....................................................................................................ATCGTAGAGGAAACTCCACGTT............................................................ 22 1 1 4.00 4 4 0 0
.....................................................................................................TCGTAGAGGAAAATCCACGT............................................................. 20 0 1 4.00 4 4 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTTAT.......................................................... 24 1 1 4.00 4 4 0 0
.....................................................................................................TCGTAGAGGAAAATCCACGTTT........................................................... 22 0 1 4.00 4 4 0 0
....................................................................................................ATCGTAGAGGGAAATCCACGTT............................................................ 22 1 1 3.00 3 3 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTATA.......................................................... 24 2 1 3.00 3 3 0 0
...................................................................................................AATCGTAGAGGAAAATCCACGTAA........................................................... 24 2 1 3.00 3 3 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTATT.......................................................... 24 1 1 3.00 3 3 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTAG........................................................... 23 2 1 3.00 3 3 0 0
...............................................................GTAGATTCTCCTTCTATGAGTAC................................................................................................ 23 0 1 3.00 3 3 0 0
....................................................................................................ATCGTAGAGGACAATCCACGTT............................................................ 22 1 1 2.00 2 2 0 0
............................................................AAGGTAGATTCTCCTTCTATGAGTA................................................................................................. 25 0 1 2.00 2 2 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTTGA.......................................................... 24 2 1 2.00 2 2 0 0
...................................................................................................AATCGTAGAGGAAAATCCACGTTT........................................................... 24 0 1 2.00 2 2 0 0
...............................................................GTAGATTCTCCTTCTATGAGT.................................................................................................. 21 0 1 2.00 2 2 0 0
.....................................................................................................TCGTAGAGGAAAATCCACGTTTA.......................................................... 23 1 1 2.00 2 2 0 0
.............................................................AGGTAGATTCTCCTTCTATGAGCCG................................................................................................ 25 3 1 2.00 2 0 0 2
....................................................................................................ATCGTAGAGGACAATCCACGT............................................................. 21 1 1 2.00 2 2 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTGA........................................................... 23 2 1 2.00 2 2 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTTC........................................................... 23 1 1 2.00 2 2 0 0
......................................................................................................CGTAGAGGAAAATCCACGTA............................................................ 20 1 1 2.00 2 2 0 0
....................................................................................................ATCGTAGAGGAAAATCAACGT............................................................. 21 1 1 2.00 2 2 0 0
....................................................................................................ATCGTAGAGGAAACTCCACGTTA........................................................... 23 2 1 2.00 2 2 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTC............................................................ 22 1 1 2.00 2 2 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTAGA.......................................................... 24 3 1 2.00 2 2 0 0
............................................................AAGGTAGATTCTCCTTCTATGAGT.................................................................................................. 24 0 1 2.00 2 2 0 0
....................................................................................................ATCGTATAGGAAAATCCACGTT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................ACCGTAGAGGAAAATCCACGT............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGACGAAAATCCACGTT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGCAAATCCACGTTT........................................................... 23 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCATGT............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAACATCCACGT............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGACAATCCACGTTA........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACAT............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTATAA......................................................... 25 3 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCAAGTTT........................................................... 23 1 1 1.00 1 1 0 0
.....................................................................................................TCGTAGAGGAAAATCCACGTTA........................................................... 22 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTACT.......................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGCTT........................................................... 23 1 1 1.00 1 1 0 0
.............................................................AGGTAGATTCTCCGTCTATGAGTCG................................................................................................ 25 3 1 1.00 1 0 0 1
....................................................................................................ATCGTAGAGGAACATCCACGTT............................................................ 22 1 1 1.00 1 1 0 0
...................................................................................................AATCGTAGAGGAACATCCACGTT............................................................ 23 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAACTCCACGTA............................................................ 22 2 1 1.00 1 1 0 0
....................................................................................................ATTGTAGAGGAAACTCCACGTTT........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTCC........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGC............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTGT........................................................... 23 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCAAGT............................................................. 21 1 1 1.00 1 0 0 1
....................................................................................................ATCGTAGCGGAAAATCCACGTTA........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................ATCCTAGAGGAAAATCCACGT............................................................. 21 1 1 1.00 1 1 0 0
............................................................AAGGTAGATTCTCCTTCTATGAGTT................................................................................................. 25 1 1 1.00 1 1 0 0
.....................................................................................................TCGTAGAGGAAAAACCACGT............................................................. 20 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAACTCCACGTAA........................................................... 23 3 1 1.00 1 1 0 0
....................................................................................................CTCGTAGAGGAAAATCCACGTTT........................................................... 23 1 1 1.00 1 1 0 0
...................................................................................................AATCGTAGAGCAAAATCCACGT............................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAAGAAAATCCACGTT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................TTCTCCTTCTATGAGTA................................................................................................. 17 0 1 1.00 1 1 0 0
...................................................................................................AATCGTAGAGGAAAATCCACGTA............................................................ 23 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCAT............................................................... 19 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTAGTT......................................................... 25 3 1 1.00 1 1 0 0
....................................................................................................ATCGGAGAGGAAAATCCACGT............................................................. 21 1 1 1.00 1 1 0 0
...................................................................................................AATCGTAGAGGAAAATTCACGCT............................................................ 23 2 1 1.00 1 1 0 0
..............................................................................................TCAAAAATCGTAGAGGAAAATCCACGTT............................................................ 28 3 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGCAAATCCACGTTA........................................................... 23 2 1 1.00 1 1 0 0
...............................................................GTAGATTCTCCTTCTATGAGTA................................................................................................. 22 0 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGCAAATCCACGTT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAATTCCACGT............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAATGTCCACGTTT........................................................... 23 2 1 1.00 1 1 0 0
...............................................................GTAGATTCTCCTTCTATGAGTAT................................................................................................ 23 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCAACGTTT........................................................... 23 1 1 1.00 1 1 0 0
....................................................................................................ATAGTAGAGGAAACTCCACGTT............................................................ 22 2 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAGAATCCACGT............................................................. 21 1 1 1.00 1 1 0 0
.....................................................................................................TCGTAGAGGAAAATCCACGTGA........................................................... 22 2 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAGATCCACGT............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAAGAAAATCCACGT............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................ATGGTAGAGGAAAATCCACGT............................................................. 21 1 1 1.00 1 0 1 0
....................................................................................................TTCGTAGAGGAAAATCCACGT............................................................. 21 1 1 1.00 1 1 0 0
...............................................................GAAGATTCTCCTTCTATGAGT.................................................................................................. 21 1 1 1.00 1 1 0 0
...................................................................................................AATCGTAGAGGAAAATCCACGTTA........................................................... 24 1 1 1.00 1 1 0 0
....................................................................................................ATGGTAGAGGATAATCCACGTT............................................................ 22 2 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTTCT.......................................................... 24 1 1 1.00 1 1 0 0
....................................................................................................ATCGGAGAGGAAAATCCACGTTT........................................................... 23 1 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGGAAATCCACGTAA........................................................... 23 3 1 1.00 1 1 0 0
.....................................................................................................TCGTAGAGGAAAATCCACG.............................................................. 19 0 1 1.00 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCAACGTTA........................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................AAATCGTAGAGGAAAATCCACGT............................................................. 23 1 1 1.00 1 1 0 0
.............................................................................................ATCAAAAATCGTAGAGGAAAATCCACGTTT........................................................... 30 3 1 1.00 1 1 0 0
.....................................................................................................TCGTAGAGGAAAATCCCCGT............................................................. 20 1 1 1.00 1 1 0 0
.....................................................................................................TCGTAGAGGAAAATCCACGTAA........................................................... 22 2 2 0.50 1 1 0 0
....................................................................................................ATCGTAGAGGACAATCCACGTAA........................................................... 23 3 2 0.50 1 1 0 0
....................................................................................................ATCGTAGAGGAAAATCCACGTAAG.......................................................... 24 3 2 0.50 1 1 0 0
....................................................................................................ATCGTAGAGGTAAATCCA................................................................ 18 1 2 0.50 1 1 0 0
....................................................................................................ATTGTAGAGGAAACTCCACGT............................................................. 21 2 2 0.50 1 1 0 0
..............................................................GGTCGATTCTCCTTCTCTGAGT.................................................................................................. 22 2 3 0.33 1 1 0 0
.............................................................................................................GAAAATCCACGTTTTCG........................................................ 17 1 5 0.20 1 0 1 0
....................................................................................................ATCGTAGAGGAAAATCCAAGTAA........................................................... 23 3 5 0.20 1 1 0 0
.....................................................................TCTCCTTCTATGAGTA................................................................................................. 16 0 5 0.20 1 1 0 0
....................................................................................................ATCGTAGAGGAAAAT................................................................... 15 0 6 0.17 1 0 1 0
..................................................................................................TAAACGTAGAGGAAAA.................................................................... 16 1 20 0.05 1 0 1 0

Anti-sense strand reads

AAGGTAGCTGCGTTCGTGTTCAAGCTCCGGAGGACCTAGCTCAACAAGAAACTATAAATTTTCCATCTAAGAGGAAGATACTCATGTTATAATTACTGATTAGCATCTCCTTTTAGGTGCAAAAGTCATAGTTTACGACGAACCCTTTGGTGGCTCCTGTTCTGCAGTAGTACCTTCTTTCG
**********************************************..(((((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).)))))))))..********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:47 PM