ID:

rno-mir-375

 Coordinate:

chr9:82161716-82161790 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

ATCAACCGGACATCTCCGACGACGACTGCGCCAGGCCCCGGGTCCTCCGCTCCGGCCCCGCGACGAGCCCCTCGCACAAACCGGACCTGAGCGTTTTGTTCGTTCGGCTCGCGTGAGGCAGGGGCGGCTTCTCAGCATAAGCCCCGGGGCCCGCCAGATCGCCACGCAAACACCT
***********************************....(((....(((((((.(((.((((.((((((...((.(((((.((........)).))))).))...)))))))))).))).)))))))...))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528819
10dpp_testes
..............................................................................................TTTGTTCGTTCGGCTCGCGTGA........................................................... 22 0 1 198.00 198 197 0 1
.....................................................................................................GTTCGGCTCGCGTGA........................................................... 15 0 1 27.00 27 27 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGAA.......................................................... 23 1 1 17.00 17 16 0 1
....................................................................................................CGTTCGGCTCGCGTGA........................................................... 16 0 1 15.00 15 15 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGAT.......................................................... 23 1 1 13.00 13 13 0 0
.................................................................................................GTTCGTTCGGCTCGCGTGA........................................................... 19 0 1 12.00 12 12 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGAAA......................................................... 24 2 1 11.00 11 11 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGAAT......................................................... 24 2 1 8.00 8 8 0 0
...............................................................................................TTGTTCGTTCGGCTCGCGTGACG......................................................... 23 1 1 8.00 8 0 8 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGT........................................................... 22 1 1 7.00 7 7 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGT............................................................. 20 0 1 7.00 7 7 0 0
...............................................................................................TTGTTCGTTCGGCTCGCGTGA........................................................... 21 0 1 7.00 7 7 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGACG......................................................... 24 1 1 6.00 6 0 6 0
.............................................................................................ATTTGTTCGTTCGGCTCGCGTGA........................................................... 23 1 1 4.00 4 4 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTG............................................................ 21 0 1 4.00 4 4 0 0
...................................................................................................TCGTTCGGCTCGCGTGACG......................................................... 19 1 1 4.00 4 0 4 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGAAAA........................................................ 25 3 1 3.00 3 3 0 0
.................................................................................................GTTCGTTCGGCTCGCGTGAA.......................................................... 20 1 1 3.00 3 3 0 0
.............................................................................................TTTTGTTCGTTCGGCTCGCGTGA........................................................... 23 0 1 3.00 3 3 0 0
.....................................................................................................GTTCGGCTCGCGTGAT.......................................................... 16 1 1 3.00 3 3 0 0
..............................................................................................TTTGTTCGTTCGGCTC................................................................. 16 0 1 2.00 2 2 0 0
.............................................................................................TTTTGTTCGTTCGGCTCGCGTGAAT......................................................... 25 2 1 2.00 2 2 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGAAAT........................................................ 25 3 1 2.00 2 2 0 0
....................................................................................................CGTTCGGCTCGCGTG............................................................ 15 0 1 2.00 2 2 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGGGA........................................................... 22 1 1 2.00 2 2 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGATT......................................................... 24 2 1 2.00 2 2 0 0
....................................................................................................CGTTCGGCTCGCGTGAT.......................................................... 17 1 1 2.00 2 2 0 0
...................................................................................................TCGTTCGGCTCGCGTGA........................................................... 17 0 1 2.00 2 2 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGATTT........................................................ 25 3 1 1.00 1 1 0 0
.................................................................................................TTTCGTTCGGCTCGCGTGA........................................................... 19 1 1 1.00 1 1 0 0
................................................................................................AGTTCGTTCGGCTCGCGTGA........................................................... 20 1 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTGGCGTGA........................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................TTGTTCGTTCGGCTCGCGTGAA.......................................................... 22 1 1 1.00 1 1 0 0
............................................................................................GACTTGTTCGTTCGGCTCGCGTG............................................................ 23 2 1 1.00 1 1 0 0
.............................................................................................TTTTGTTCGTTCGGCTCGCGTGAA.......................................................... 24 1 1 1.00 1 1 0 0
.................................................................................................GTTCGTTCGGCTCGCGTGATT......................................................... 21 2 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGATCGCGTGACG......................................................... 24 2 1 1.00 1 0 1 0
.................................................................................................GTTCGTTCGGCTCGCGTGAAA......................................................... 21 2 1 1.00 1 1 0 0
.............................................................................................TCCTGTTCGTTCGGCTCGCGTGA........................................................... 23 2 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGAAGA........................................................ 25 2 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTCGC............................................................... 18 0 1 1.00 1 1 0 0
..............................................................................................CTTGTTCGTTAGGCTCGCGTGA........................................................... 22 2 1 1.00 1 1 0 0
..............................................................................................TTTGTCCGTTCGGCTCGCGGGA........................................................... 22 2 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCG.............................................................. 19 0 1 1.00 1 1 0 0
..............................................................................................TATGTTCGTTCGGCTCGCGTGA........................................................... 22 1 1 1.00 1 1 0 0
.................................................................................................GTTCGTTCGGCTCGCGTGT........................................................... 19 1 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGGGACG......................................................... 24 2 1 1.00 1 0 1 0
..............................................................................................TTTGTTCGTTCGGCTCGCTTGA........................................................... 22 1 1 1.00 1 1 0 0
.............................................................................................TTTTGTTCGTTCGGCTCGCGTGAAA......................................................... 25 2 1 1.00 1 0 0 1
..............................................................................................TTTGTTCGTTCGGCTCG................................................................ 17 0 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTTGGCTCGCGTGA........................................................... 22 1 1 1.00 1 1 0 0
.................................................................................................GTTCGTTCGGCTCGCGTGAT.......................................................... 20 1 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTTT........................................................... 22 2 1 1.00 1 1 0 0
........................................GGTCCTCCGCTCCGGCCCC.................................................................................................................... 19 0 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTCGAGTGA........................................................... 22 1 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTAGCGTGA........................................................... 22 1 1 1.00 1 1 0 0
..............................................................................................TTTGTTCCTTCGGCTCGCGTGA........................................................... 22 1 1 1.00 1 1 0 0
..............................................................................................TTCGTTCGTTCGGCTCGCGTGA........................................................... 22 1 1 1.00 1 1 0 0
..............................................................................................TTGGTTCGTTCGGCTCGCGTGA........................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................TTGTTCGTTCGGCTCGCGTGAAAA........................................................ 24 3 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGCTCGCGTGGT.......................................................... 23 2 1 1.00 1 1 0 0
..............................................................................................TTTGTTCGTTCGGTTCGCGTGA........................................................... 22 1 1 1.00 1 1 0 0
.....................................................................................................GTTCGGCTCGCGTGAA.......................................................... 16 1 3 0.67 2 2 0 0
....................................................................................................AGTTCGGCTCGCGTGA........................................................... 16 1 2 0.50 1 1 0 0
...............................................................................................TGAATCGTTCGGCTCGCGTGA........................................................... 21 3 2 0.50 1 1 0 0
.....................................................................................................GTCCGGCTCGCGTGA........................................................... 15 1 3 0.33 1 1 0 0
.....................................................................................................GTTCGGCTCGCGTGAAA......................................................... 17 2 11 0.18 2 2 0 0
.....................................................................................................GTTCGGCTCGCGTGT........................................................... 15 1 9 0.11 1 1 0 0
.....................................................................................................GTTCGGCTCGAGTGA........................................................... 15 1 10 0.10 1 1 0 0
.....................................................................................................GCTCGGCTCGCGTGA........................................................... 15 1 15 0.07 1 1 0 0
....................................................................................................CGTTTGGCTCGCGTGAA.......................................................... 17 2 20 0.05 1 1 0 0

Anti-sense strand reads

TAGTTGGCCTGTAGAGGCTGCTGCTGACGCGGTCCGGGGCCCAGGAGGCGAGGCCGGGGCGCTGCTCGGGGAGCGTGTTTGGCCTGGACTCGCAAAACAAGCAAGCCGAGCGCACTCCGTCCCCGCCGAAGAGTCGTATTCGGGGCCCCGGGCGGTCTAGCGGTGCGTTTGTGGA
***********************************....(((....(((((((.(((.((((.((((((...((.(((((.((........)).))))).))...)))))))))).))).)))))))...))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:50 PM