ID:

rno-mir-369

 Coordinate:

chr6:133893693-133893771 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.4 -34.6 -34.6

Sense Strand Reads

CCGCCGCAGCCTGCGCCAGGATGTCACTACCTCAGCTCGGCACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTAGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAATGCTCAGCTTGGAGAAAGCTCTCGGAGTTGCAGCCCCCGTGGGGGTGG
************************************************.(((((((.((.((((((((((((((((..((((((...((....)).))))))..)))))))))))))))).)))))))))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
..................................................................................................AATAATACATGGTTGATCTTT............................................................ 21 0 1 215.00 215 207 8 0
.................................................................................................GAATAATACATGGTTGATCTTT............................................................ 22 0 1 86.00 86 86 0 0
...............................................................AGATCGACCGTGTTATATTCGC.............................................................................................. 22 0 1 70.00 70 70 0 0
...............................................................AGATCGACCGTGTTATATTCG............................................................................................... 21 0 1 32.00 32 32 0 0
...............................................................AGATCGACCGTGTTATATTCGCA............................................................................................. 23 1 1 29.00 29 29 0 0
...............................................................AGATCGACCGTGTTATATTCGCT............................................................................................. 23 0 1 25.00 25 24 1 0
..................................................................................................AATAATACATGGTTGATCTTTT........................................................... 22 0 1 18.00 18 18 0 0
..................................................................................................AATAATACATGGTTGATCTT............................................................. 20 0 1 7.00 7 7 0 0
.................................................................................................GAATAATACATGGTTGATCTTTA........................................................... 23 1 1 7.00 7 7 0 0
..................................................................................................AATCATACATGGTTGATCTTT............................................................ 21 1 1 5.00 5 4 1 0
...................................................................................................ATAATACATGGTTGATCTTT............................................................ 20 0 1 5.00 5 5 0 0
.................................................................................................GAATAATACATGGTTGATCTTTT........................................................... 23 0 1 5.00 5 5 0 0
.................................................................................................GAATAATACATGGTTGATCTT............................................................. 21 0 1 5.00 5 5 0 0
..................................................................................................AATAATACATGGTTGATCTTTTT.......................................................... 23 1 1 4.00 4 4 0 0
.............................................................AAAGATCGACCGTGTTATATTCGCA............................................................................................. 25 3 1 4.00 4 4 0 0
...............................................................AGATCGACCGTGTTATATTCGT.............................................................................................. 22 1 1 3.00 3 3 0 0
.....................................................................................................AATACATGGTTGATCTTT............................................................ 18 0 1 3.00 3 2 0 1
..............................................................AAGATCGACCGTGTTATATTCGCT............................................................................................. 24 1 1 3.00 3 3 0 0
............................................................AAAAGATCGACCGTGTTATATTCGC.............................................................................................. 25 3 1 3.00 3 3 0 0
...............................................................AGATCGACCGTGTTATATTCGCTT............................................................................................ 24 0 1 3.00 3 3 0 0
..................................................................................................AATAATACATGGTTGATCTTTAT.......................................................... 23 2 2 2.50 5 5 0 0
...............................................................AGATCGACCGTGTTATATTCGCTTAGCT........................................................................................ 28 0 1 2.00 2 2 0 0
..................................................................TCGACCGTGTTATATTCGC.............................................................................................. 19 0 1 2.00 2 2 0 0
..............................................................AAGATCGACCGTGTTATATTCGC.............................................................................................. 23 1 1 2.00 2 2 0 0
...................................................................................................ATAATACATGGTTGATCTTTTTT......................................................... 23 1 1 2.00 2 2 0 0
..................................................................................................AATAATACATGGTTGATCTTTA........................................................... 22 1 1 2.00 2 2 0 0
...............................................................AGATCGACCGTGTTATATTCGCTTAGC......................................................................................... 27 0 1 2.00 2 2 0 0
.................................................................................................GAATAATACATGGTTGATCTA............................................................. 21 1 1 2.00 2 2 0 0
.................................................................................................GAATAATACATGGTTGATC............................................................... 19 0 1 2.00 2 2 0 0
..................................................................................................AATAATACATGGTTGATCTTTAA.......................................................... 23 2 3 1.67 5 5 0 0
..................................................................................................AATAATACATGGTTGATCTTG............................................................ 21 1 1 1.00 1 1 0 0
...............................................................AGATCGACCGTGTTATATTCGGA............................................................................................. 23 2 1 1.00 1 1 0 0
...............................................................AGATCGACCGCGTTATATTCGC.............................................................................................. 22 1 1 1.00 1 1 0 0
...............................................................AGATCGACCGTCTTATATTCGC.............................................................................................. 22 1 1 1.00 1 1 0 0
...............................................................AGATCGACCGTGTTATATTCGA.............................................................................................. 22 1 1 1.00 1 1 0 0
..................................................................................................AATAATACATGGTTGATC............................................................... 18 0 1 1.00 1 1 0 0
...............................................................AGATCGACCGTGTTATATTCGTA............................................................................................. 23 2 1 1.00 1 1 0 0
..............................................................................................TGTAAATAATACATGGTTGATCTTT............................................................ 25 3 3 1.00 3 0 3 0
...............................................................AGATCGACCGTGTTATATTC................................................................................................ 20 0 1 1.00 1 1 0 0
..................................................................................................AGTAATACATGGTTGATCTTTT........................................................... 22 1 1 1.00 1 1 0 0
.................................................................................................GAATAATACATGGTTGATA............................................................... 19 1 1 1.00 1 1 0 0
...................................................................................................ATAATACATGGTTGATCTTTT........................................................... 21 0 1 1.00 1 1 0 0
............................................................AAAAGATCGACCGTGTTATATTCG............................................................................................... 24 3 1 1.00 1 1 0 0
..................................................................................................AATAATCCATGGTTGATCTTT............................................................ 21 1 1 1.00 1 1 0 0
................................................................GATCGACCGTGTTATATTCGC.............................................................................................. 21 0 1 1.00 1 1 0 0
.................................................................................................GAATACTACATGGTTGATCTTT............................................................ 22 1 1 1.00 1 1 0 0
...............................................................TGATCGACCGTGTTATATTCGA.............................................................................................. 22 2 1 1.00 1 1 0 0
..................................................................................................AATAATACATGGTTGATCTCT............................................................ 21 1 1 1.00 1 1 0 0
.................................................................................................GAATAATACATGGTTGCTCTTT............................................................ 22 1 1 1.00 1 1 0 0
..................................................................................................AATAATACATGGTTGATCTTA............................................................ 21 1 3 1.00 3 3 0 0
...............................................................AGATCGAACGTGTTATATTCGC.............................................................................................. 22 1 1 1.00 1 1 0 0
..................................................................................................AATAATACAAGGTTGATCTTTT........................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................ATAATACATGGTTGATCTTTTCT......................................................... 23 0 1 1.00 1 1 0 0
.................................................................................................GAATAATAAATGGTTGATCTTT............................................................ 22 1 1 1.00 1 1 0 0
.................................................................................................GAATAATACATGGTTGATCTTTG........................................................... 23 1 1 1.00 1 1 0 0
..................................................................................................AATAATACATGGTTGATCTTC............................................................ 21 1 1 1.00 1 1 0 0
..................................................................................................AATAGTACATGGTTGATCTT............................................................. 20 1 1 1.00 1 1 0 0
...................................................................................................ATAATACATGGTTGATCTTTTA.......................................................... 22 1 1 1.00 1 1 0 0
...............................................................AGATCGACCGTGTTCTATTCGCTT............................................................................................ 24 1 1 1.00 1 1 0 0
..................................................................................................AATAATACATGGTTGATCT.............................................................. 19 0 1 1.00 1 1 0 0
...............................................................AGATCGACCGTGTTATATTCGCTTAG.......................................................................................... 26 0 1 1.00 1 1 0 0
..............................................................AAGTTCGACCGTGTTATATTCGC.............................................................................................. 23 2 1 1.00 1 1 0 0
................................................................GATCGACCGTGTTATATTCG............................................................................................... 20 0 1 1.00 1 1 0 0
...............................................................AGATCGACCGTGTTATATTCGCTA............................................................................................ 24 1 1 1.00 1 1 0 0
.................................................................................................GAATAATACATGGTAGATCTT............................................................. 21 1 1 1.00 1 1 0 0
...................................................................................................ATACTACATGGTTGATCTTT............................................................ 20 1 1 1.00 1 1 0 0
.................................................................................................GAATAATAAATGGTTGATCTTTA........................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................AATAATACATCGTTGATCTTT............................................................ 21 1 1 1.00 1 1 0 0
..........................................................CACGGAGATCGACCGTGTTATATTCGA.............................................................................................. 27 3 1 1.00 1 1 0 0
...............................................................AGATCGACCGTGTTATATTCGAA............................................................................................. 23 2 1 1.00 1 1 0 0
..................................................................................................AATAATACCTGGTTGATCTTT............................................................ 21 1 3 0.67 2 2 0 0
..................................................................................................AATAATACATGGTTGATCTTATT.......................................................... 23 2 2 0.50 1 1 0 0
.................................................................................................AAATAATACATGGTTGATC............................................................... 19 1 4 0.50 2 2 0 0
.................................................................................................GACTAATACATAGTTGATCTTTA........................................................... 23 3 5 0.20 1 1 0 0
..................................................................................................AATAATACATGGTTAATCTTT............................................................ 21 1 5 0.20 1 1 0 0
..................................................................................................AATAATACATGGTTGATCTTTTTTTT....................................................... 26 3 5 0.20 1 1 0 0
.................................................................................................GAATAATACATGGTTAATCTTT............................................................ 22 1 5 0.20 1 1 0 0
.................................................................................................GAATAATACAAGGTTGATCTTT............................................................ 22 1 6 0.17 1 1 0 0

Anti-sense strand reads

GGCGGCGTCGGACGCGGTCCTACAGTGATGGAGTCGAGCCGTGGAGACGACCATGAACTTCCCTCTAGCTGGCACAATATAAGCGAATCGACTGAAGCTTATTATGTACCAACTAGAAAAGAGTCATAGTTACGAGTCGAACCTCTTTCGAGAGCCTCAACGTCGGGGGCACCCCCACC
*********************************************.(((((((.((.((((((((((((((((..((((((...((....)).))))))..)))))))))))))))).)))))))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:48 PM