ID:

rno-mir-363

 Coordinate:

chrX:140117098-140117184 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.8 -34.4

Sense Strand Reads

AGTTTCTGAGAGTTGTAAGATATGTTAGACTATAATTATGAAATGAACTGTTTTGCTGTTATCGGGTGGATCACGATGCAATTTTGATTAGAGTAATGGGAGAGAAATTGCACGGTATCCATCTGTAAACCGCAGGACTTTTGGTGACTGCAGTCGATCAGTGCTAAAGTAAGGTTGTAAAATCCGT
***********************************************..(((((((.(((..(((((((((..((.(((((((((..((..........))..)))))))))))..)))))))))..))).))))))).....******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
.........................................................................................................AATTGCACGGTATCCATCTGTAT........................................................... 23 1 1 209.00 209 208 0 1
.........................................................................................................AATTGCACGGTATCCATCTGTAA........................................................... 23 0 1 196.00 196 188 7 1
.........................................................................................................AATTGCACGGTATCCATCTGTA............................................................ 22 0 1 106.00 106 97 9 0
.........................................................................................................AATTGCACGGTATCCATCTGT............................................................. 21 0 1 44.00 44 30 13 1
..........................................................................................................ATTGCACGGTATCCATCTGTAT........................................................... 22 1 1 34.00 34 32 2 0
..........................................................................................................ATTGCACGGTATCCATCTGTAA........................................................... 22 0 1 25.00 25 20 5 0
..........................................................................................................ATTGCACGGTATCCATCTGTATT.......................................................... 23 2 1 19.00 19 19 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTATT.......................................................... 24 2 1 16.00 16 16 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTAAA.......................................................... 24 0 1 13.00 13 13 0 0
..........................................................................................................ATTGCACGGTATCCATCTGTA............................................................ 21 0 1 13.00 13 12 1 0
.........................................................................................................AATTGCACGGTATCCATCTGTT............................................................ 22 1 1 10.00 10 9 1 0
.........................................................................................................AATTGCACGGTATCCATCTGTTT........................................................... 23 2 1 7.00 7 6 1 0
..........................................................................................................ATTGCACGGTATCCATCTGTAAA.......................................................... 23 0 1 7.00 7 7 0 0
..........................................................................................................ATTGCACGGTATCCATCTGT............................................................. 20 0 1 6.00 6 4 2 0
..........................................................................................................ATTGCACGGTATCCATCTGTATA.......................................................... 23 1 1 4.00 4 3 1 0
.........................................................................................................AATTGCACGGTATCCATCTGTAG........................................................... 23 1 1 4.00 4 4 0 0
..........................................................................................................ATTGCACGGTATCCATCTGTATAT......................................................... 24 2 1 4.00 4 4 0 0
.........................................................................................................AATTGCACGGTATCCATCTG.............................................................. 20 0 1 4.00 4 2 2 0
..........................................................................................................ATTGCACGGTATCCATCTGTAAT.......................................................... 23 1 1 3.00 3 3 0 0
..........................................................................................................ATTGCACGGTATCCATCTGTAAAA......................................................... 24 1 1 3.00 3 3 0 0
.........................................................................................................AATTGCACGGTATCCATCT............................................................... 19 0 1 3.00 3 0 3 0
........................................................................................................AAATTGCACGGTATCCATCTGTA............................................................ 23 0 1 3.00 3 3 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTAGA.......................................................... 24 1 1 3.00 3 3 0 0
......................................................................................................AAAAATTGCACGGTATCCATCTGTAT........................................................... 26 2 1 3.00 3 3 0 0
........................................................................................................AAATTGCACGGTATCCATCTGTTT........................................................... 24 2 1 3.00 3 3 0 0
.........................................................................................................AATTCCACGGTATCCATCTGTA............................................................ 22 1 1 2.00 2 2 0 0
..........................................................................................................ATTGCACGGTATCCATCT............................................................... 18 0 1 2.00 2 1 1 0
.........................................................................................................AATTGCACGGTATCCATTTGTATC.......................................................... 24 3 1 2.00 2 2 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTCA........................................................... 23 1 1 2.00 2 2 0 0
.........................................................................................................AATTGCACGGTATACATCTGTA............................................................ 22 1 1 2.00 2 2 0 0
.........................................................................................................AATTGCATGGTATCCATCTGTA............................................................ 22 1 1 2.00 2 2 0 0
.........................................................................................................TATTGCACGGTATCCATCTGTAA........................................................... 23 1 1 2.00 2 2 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTGT........................................................... 23 2 1 2.00 2 2 0 0
..........................................................................................................ATTGCACGGTATCCATCTGTATATT........................................................ 25 3 1 2.00 2 2 0 0
........................................................................................................AAATTGCACGGTATCCATCTGTAAAA......................................................... 26 1 1 2.00 2 2 0 0
.........................................................................................................AATTGCACGGGATCCATCTGTAT........................................................... 23 2 1 2.00 2 2 0 0
..........................................................................................................ATTGCACGGTATCCATCTGTTT........................................................... 22 2 1 2.00 2 0 2 0
.........................................................................................................AATTGCACGGTATCCATCTGTCT........................................................... 23 2 2 1.50 3 3 0 0
..........................................................................................................ATTGCACGGTATCCATCTGTTTT.......................................................... 23 3 4 1.25 5 4 0 1
.........................................................................................................AATTGCACGGTATCCATCTGAAA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGCTATCCATCTGT............................................................. 21 1 1 1.00 1 1 0 0
.........................................................................................................AAGTGCACGGTATCCATCTGT............................................................. 21 1 1 1.00 1 0 1 0
..........................................................................................................ATTGCACGGTATCCATCTCTAT........................................................... 22 2 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTATG.......................................................... 24 2 1 1.00 1 1 0 0
..........................................................................................................ACTGCACGGTATCCATCTGTA............................................................ 21 1 1 1.00 1 0 1 0
.........................................................................................................AATTGCACGGTCTCCATCTGTAC........................................................... 23 2 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTCTCGATCTGTAA........................................................... 23 2 1 1.00 1 1 0 0
........................................................................................................CAATTGCACGGTATCCATCTGTAA........................................................... 24 1 1 1.00 1 1 0 0
...........................................................................................................TTGCACGGTATCCATCTGTAAA.......................................................... 22 0 1 1.00 1 1 0 0
............................................................................................................TGCACGGTATCCATCTGT............................................................. 18 0 1 1.00 1 0 1 0
.........................................................................................................AATTGCACGGGATCCATCTGTAA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTTCACGGTATCCATCTGTAT........................................................... 23 2 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTAAC.......................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATGCATCTGTAAA.......................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTATA.......................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATTCATCTGTAT........................................................... 23 2 1 1.00 1 1 0 0
.........................................................................................................AATTACACGGTATCCATCTGTAA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTCTCCATCTGTA............................................................ 22 1 1 1.00 1 1 0 0
..........................................................................................................ATTGCACGGTATCCCTCTGTAAA.......................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGCA............................................................ 22 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTAGT.......................................................... 24 2 1 1.00 1 1 0 0
.........................................................................................................AATTGTACGGTATCCATCTGTAA........................................................... 23 1 1 1.00 1 0 1 0
..........................................................................................................ATTGCACGGTATCCATCTGTTA........................................................... 22 1 1 1.00 1 1 0 0
........................................................................................................AAATTGCACGGTATCCATCTGTAT........................................................... 24 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCATGGTATCCATCTGTAA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTGA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTC............................................................ 22 1 1 1.00 1 1 0 0
.......................................................................................................TAAATTGCACGGTATCCATCTG.............................................................. 22 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTTAA.......................................................... 24 1 1 1.00 1 1 0 0
..........................................................................................................ATTGCACGGTATCCCTCTGTTA........................................................... 22 2 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTAAAT......................................................... 25 1 1 1.00 1 1 0 0
.........................................................................................................AATAGCACGGTATCCATCTGTA............................................................ 22 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTTA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCAT................................................................. 17 0 1 1.00 1 0 1 0
.........................................................................................................AATTGCACGGTATCCATCTGTATAT......................................................... 25 2 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTCTCCATCTGTAA........................................................... 23 1 1 1.00 1 1 0 0
..............................................................CGGGTGGATCACGATGCAATTTT...................................................................................................... 23 0 1 1.00 1 1 0 0
..................................................................................................TGATGGAAATTGCACGGTATCCATCTGTAA........................................................... 30 3 1 1.00 1 1 0 0
.......................................................................................................AAAATTGCACGGTATCCATCTGT............................................................. 23 1 1 1.00 1 1 0 0
..........................................................................................................ATTGCACGGTATCCATCTCTAA........................................................... 22 1 1 1.00 1 0 1 0
.........................................................................................................AATTGCACGGTATACATCTGTAT........................................................... 23 2 2 1.00 2 2 0 0
.........................................................................................................AATTGCACGGTATCCAGCTGTAT........................................................... 23 2 1 1.00 1 1 0 0
.........................................................................................................CATTGCACGGTATCCATCTGT............................................................. 21 1 1 1.00 1 1 0 0
........................................................................................................AACTTGCACGGAATCCATCTGTAA........................................................... 24 2 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATACATCTGTAA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTAAAA......................................................... 25 1 1 1.00 1 1 0 0
.........................................................................................................AAGTGCACGGTATCCATCTGTAA........................................................... 23 1 1 1.00 1 0 1 0
.........................................................................................................AATTGCACGGTATCCATCTGTCGA.......................................................... 24 2 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGCATCCATCTGTAA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCACCTGTA............................................................ 22 1 1 1.00 1 1 0 0
..........................................................................................................ATTGCACGGTATCCATCTGTATTT......................................................... 24 3 4 1.00 4 4 0 0
........................................................................................................AAATTGCACGGTATCCATCTGTAA........................................................... 24 0 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCGATCTGTAA........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTCTCCATCTGTAG........................................................... 23 2 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTAC........................................................... 23 1 1 1.00 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGA............................................................. 21 1 1 1.00 1 1 0 0
...........................................................................................................TTGCACGGTATCCATCTGTTT........................................................... 21 2 3 0.67 2 0 2 0
.........................................................................................................AATTGCCCGGTATCCATCTGTAAGT......................................................... 25 3 2 0.50 1 1 0 0
.........................................................................................................AATTGCATGGAATCCATCTGTA............................................................ 22 2 2 0.50 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTCTT.......................................................... 24 3 2 0.50 1 1 0 0
.........................................................................................................AATTGCACGGTATCCATCTGTTTT.......................................................... 24 3 2 0.50 1 1 0 0
..........................................................................................................ATTGCACGGTATCCATCTGGAT........................................................... 22 2 2 0.50 1 1 0 0
.........................................................................................................AATTGCACGGTATCTATCTGTAT........................................................... 23 2 2 0.50 1 1 0 0
.........................................................................................................AATTGCATGGTATCCATCTGTAT........................................................... 23 2 2 0.50 1 1 0 0
..........................................................................................................ATTGCACGGTATCCAT................................................................. 16 0 2 0.50 1 0 1 0
..........................................................................................................ATTGCACGGTATCAATCTGTATT.......................................................... 23 3 3 0.33 1 1 0 0
.........................................................................................................AATTGCACGGGATCCATTTGTAT........................................................... 23 3 4 0.25 1 1 0 0
.........................................................................................................AATTGCACGGAATCCATCTGTAGT.......................................................... 24 3 4 0.25 1 1 0 0
..........................................................................................................ATTGCACGGCATCCATCTGTATT.......................................................... 23 3 5 0.20 1 1 0 0
.........................................................................................................AATTGCACGGTCTCCATCTGTTT........................................................... 23 3 6 0.17 1 1 0 0
...........................................................................................................TTGCACGGTATCCCTCTGTATT.......................................................... 22 3 14 0.07 1 1 0 0

Anti-sense strand reads

TCAAAGACTCTCAACATTCTATACAATCTGATATTAATACTTTACTTGACAAAACGACAATAGCCCACCTAGTGCTACGTTAAAACTAATCTCATTACCCTCTCTTTAACGTGCCATAGGTAGACATTTGGCGTCCTGAAAACCACTGACGTCAGCTAGTCACGATTTCATTCCAACATTTTAGGCA
********************************************..(((((((.(((..(((((((((..((.(((((((((..((..........))..)))))))))))..)))))))))..))).))))))).....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:51 PM