ID:

rno-mir-3592

Coordinate:

chr6:133884161-133884276 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CAACTTGACTGAACCGCCATCTTTCTGCAAGCTGCCATCATGTCCAGGAAGTCCTTAGAGGTAGCATTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCACAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCACAGAAAAGCAGAGACAAGACAGACAAAGGGCCCCTTCCATTTCTCCAAGGGCTATGGTTTCCAACC
***********************************......((.......(((.......((......((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....)))).)))))).......))........))).........))***********************************
Read size # Mismatch Hit Count Total Norm Total

Anti-sense strand reads

GTTGAACTGACTTGGCGGTAGAAAGACGTTCGACGGTAGTACAGGTCCTTCAGGAATCTCCATCGTAAACCATGACTTTTTTCACAACAGGCACTTACTAAGCAGTGTTCATTTCGCTTAGGTGGTGCTTGTTGAAGAGAAGTTCATGGTGTCTTTTCGTCTCTGTTCTGTCTGTTTCCCGGGGAAGGTAAAGAGGTTCCCGATACCAAAGGTTGG
***********************************......((.......(((.......((......((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....)))).)))))).......))........))).........))***********************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528818
Adult_testes_Mili_IP
GSM1528817
Adult_testes
...................................................................................................................GCTTAGGTGGTGCTTGTTGAAG............................................................................... 22 0 1 341.00 341 340 0 1
..................................................................................................................AGCTTAGGTGGTGCTTGTTGAAG............................................................................... 23 1 1 213.00 213 212 0 1
..................................................................................................................TGCTTAGGTGGTGCTTGTTGAAG............................................................................... 23 1 1 172.00 172 172 0 0
...............................................................................TTTCACAACAGGCACTTACTAA................................................................................................................... 22 0 1 163.00 163 157 5 1
...................................................................................................................ACTTAGGTGGTGCTTGTTGAAG............................................................................... 22 1 1 39.00 39 39 0 0
.................................................................................................................TTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 24 1 1 28.00 28 28 0 0
..............................................................................TTTTCACAACAGGCACTTACTAA................................................................................................................... 23 0 1 28.00 28 28 0 0
................................................................................TTCACAACAGGCACTTACTAA................................................................................................................... 21 0 1 26.00 26 21 5 0
...................................................................................................................GCTTAGGTGGTGCTTGTTGAA................................................................................ 21 0 1 20.00 20 20 0 0
..............................................................................ATTTCACAACAGGCACTTACTAA................................................................................................................... 23 1 1 19.00 19 19 0 0
.................................................................................................................TAGCTTAGGTGGTGCTTGTTGAAG............................................................................... 24 1 1 18.00 18 17 0 1
..................................................................................................................TGCTTAGGTGGTGCTTGTTGAA................................................................................ 22 1 1 17.00 17 17 0 0
..................................................................................................................AGCTTAGGTGGTGCTTGTTGAA................................................................................ 22 1 1 13.00 13 13 0 0
................................................................................................................TTTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 25 1 1 11.00 11 11 0 0
................................................................................................................TTCGCTTAGGTGGTGCTTGTTGA................................................................................. 23 0 1 10.00 10 10 0 0
..................................................................................................................AACTTAGGTGGTGCTTGTTGAAG............................................................................... 23 2 1 9.00 9 9 0 0
...............................................................................TTTCACAACAGGCACTTACTA.................................................................................................................... 21 0 1 8.00 8 8 0 0
...................................................................................................................TCTTAGGTGGTGCTTGTTGAAG............................................................................... 22 1 1 8.00 8 8 0 0
................................................................................................................TAAGCTTAGGTGGTGCTTGTTGAAG............................................................................... 25 2 1 7.00 7 7 0 0
.................................................................................................................AAGCTTAGGTGGTGCTTGTTGAAG............................................................................... 24 2 1 7.00 7 7 0 0
................................................................................................................TATGCTTAGGTGGTGCTTGTTGAAG............................................................................... 25 2 1 7.00 7 7 0 0
.................................................................................................................TCGCTTAGGTGGTGCTTGTTGA................................................................................. 22 0 1 6.00 6 6 0 0
....................................................................................................................CTTAGGTGGTGCTTGTTGAAG............................................................................... 21 0 1 6.00 6 6 0 0
...................................................................................................................GCTTAGGTGGTGCTTGTTGA................................................................................. 20 0 1 6.00 6 6 0 0
...................................................................................................................AATTAGGTGGTGCTTGTTGAAG............................................................................... 22 2 1 6.00 6 6 0 0
................................................................................................................TTAGCTTAGGTGGTGCTTGTTGAAG............................................................................... 25 1 1 6.00 6 6 0 0
.............................................................................TTTTTCACAACAGGCACTTACTAA................................................................................................................... 24 0 1 6.00 6 6 0 0
...............................................................................................................TTTTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 26 1 1 6.00 6 6 0 0
..................................................................................................................TACTTAGGTGGTGCTTGTTGAAG............................................................................... 23 2 1 5.00 5 5 0 0
.................................................................................................................AAACTTAGGTGGTGCTTGTTGAAG............................................................................... 24 3 1 5.00 5 5 0 0
..................................................................................................................CGCTTAGGTGGTGCTTGTTGA................................................................................. 21 0 1 5.00 5 5 0 0
...............................................................................................................GATCGCTTAGGTGGTGCTTGTTGA................................................................................. 24 2 1 5.00 5 5 0 0
.................................................................................................................ATGCTTAGGTGGTGCTTGTTGAAG............................................................................... 24 2 1 4.00 4 4 0 0
................................................................................................................TTTGCTTAGGTGGTGCTTGTTGAA................................................................................ 24 1 1 4.00 4 4 0 0
.................................................................................................................TTGCTTAGGTGGTGCTTGTTGAA................................................................................ 23 1 1 4.00 4 4 0 0
................................................................................................................ATTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 25 2 1 4.00 4 4 0 0
...................................................................................................................GCTTAGGTTGTGCTTGTTGAAG............................................................................... 22 1 1 3.00 3 3 0 0
..................................................................................................................ATCTTAGGTGGTGCTTGTTGAAG............................................................................... 23 2 1 3.00 3 3 0 0
.............................................................................TATTTCACAACAGGCACTTACTAA................................................................................................................... 24 1 1 3.00 3 3 0 0
...............................................................................................................TTTAGCTTAGGTGGTGCTTGTTGAAG............................................................................... 26 1 1 3.00 3 3 0 0
................................................................................................................TTAGCTTAGGTGGTGCTTGTTGAA................................................................................ 24 1 1 3.00 3 3 0 0
..................................................................................................................GACTTAGGTGGTGCTTGTTGAAG............................................................................... 23 2 1 3.00 3 3 0 0
...............................................................................................................TTTTGCTTAGGTGGTGCTTGTTGA................................................................................. 24 1 1 3.00 3 3 0 0
.....................................................................................................................TTAGGTGGTGCTTGTTGAAG............................................................................... 20 0 1 3.00 3 3 0 0
................................................................................................................AAAGCTTAGGTGGTGCTTGTTGAAG............................................................................... 25 3 1 3.00 3 3 0 0
..................................................................................................................AGCTTAGGTGGAGCTTGTTGAAG............................................................................... 23 2 1 3.00 3 3 0 0
...................................................................................................................GCTTAGGTGGTGCTTGTTGAAGA.............................................................................. 23 0 1 3.00 3 3 0 0
...............................................................................................................TTTCGCTTAGGTGGTGCTTGTTGA................................................................................. 24 0 1 3.00 3 3 0 0
...............................................................................................................TATTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 26 2 1 2.00 2 2 0 0
..............................................................................TTTTCACAACAGGCACTTACT..................................................................................................................... 21 0 1 2.00 2 2 0 0
..................................................................................................................TAATTAGGTGGTGCTTGTTGAAG............................................................................... 23 3 2 2.00 4 4 0 0
..............................................................................................................TTTTTGCTTAGGTGGTGCTTGTTGAA................................................................................ 26 2 1 2.00 2 2 0 0
.............................................................................AATTTCACAACAGGCACTTACTAA................................................................................................................... 24 2 1 2.00 2 2 0 0
..................................................................................................................AGCTTAGGTGGTGCTTGTTGA................................................................................. 21 1 1 2.00 2 2 0 0
...................................................................................................................GCTTAGGTGGTGCTTGTTGCAG............................................................................... 22 1 1 2.00 2 2 0 0
..................................................................................................................AGCTTAGGTGGTGCTTGTTGAAGA.............................................................................. 24 1 1 2.00 2 2 0 0
..............................................................................................................TTTTCGCTTAGGTGGTGCTTGTTGA................................................................................. 25 1 1 2.00 2 2 0 0
.................................................................................................................AGGCTTAGGTGGTGCTTGTTGAAG............................................................................... 24 2 1 2.00 2 2 0 0
..................................................................................................................AGCTTAGGTGGTGTTTGTTGAAG............................................................................... 23 2 1 2.00 2 2 0 0
...............................................................................................................TTAAGCTTAGGTGGTGCTTGTTGAAG............................................................................... 26 2 1 2.00 2 2 0 0
..................................................................................................................TGCTTAGGCGGTGCTTGTTGAAG............................................................................... 23 2 1 2.00 2 2 0 0
...................................................................................................................ACTTAGGTGGTGCTAGTTGAAG............................................................................... 22 2 1 1.00 1 1 0 0
..................................................................................................................AGCTTAGGTGGCGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................................ACCTTAGGTGGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTAGTGCTTGTTGA................................................................................. 21 2 1 1.00 1 1 0 0
....................................................................................................................ATTAGGTGGTGCTTGTTGAAG............................................................................... 21 1 1 1.00 1 1 0 0
............................................................................TTTTTTCACAACAGGCACTTACTAA................................................................................................................... 25 0 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGCGGTGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
...............................................................................TTTCACAACAGGCACTTACTAC................................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGTGTTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
......................................................................................................................TAGGTGGTGCTTGTTGAAG............................................................................... 19 0 1 1.00 1 1 0 0
............................................................................AAATTTCACAACAGGCACTTACTAA................................................................................................................... 25 3 1 1.00 1 1 0 0
..................................................................................................................CACTTAGGTGGTGCTTGTTGAAGAAAA........................................................................... 27 2 1 1.00 1 1 0 0
.................................................................................................................GCGCTTAGGTGGTGCTTGTTGAAG............................................................................... 24 1 1 1.00 1 0 1 0
..................................................................................................................AGCTTAAGTGGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTGGTGCTTGTTGA................................................................................. 21 1 1 1.00 1 1 0 0
..............................................................................TTTTCACAACAGGCACTTACTA.................................................................................................................... 22 0 1 1.00 1 1 0 0
...................................................................................................................TCTTAGGTGGTGCTTGTTGA................................................................................. 20 1 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTGGTGCTTGTTGACG............................................................................... 23 2 1 1.00 1 1 0 0
................................................................................TTCACAACAGGCCCTTACTAA................................................................................................................... 21 1 1 1.00 1 0 1 0
..............................................................................CTTTCACAACCGGCACTTACTA.................................................................................................................... 22 2 1 1.00 1 1 0 0
..................................................................................................................GGCTTAGGTGGTGCTTGTTGAC................................................................................ 22 2 1 1.00 1 1 0 0
..............................................................................AATTCACAACAGGCACTTACTAA................................................................................................................... 23 2 1 1.00 1 1 0 0
................................................................................................................TACGCTTAGGTGGTGCTTGTTGA................................................................................. 23 1 1 1.00 1 1 0 0
................................................................................TTCACAACAGGCACTTACT..................................................................................................................... 19 0 1 1.00 1 1 0 0
..................................................................................................................AGCTTAGGAGGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGTACTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGCGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
....................................................................................................................CTTAGGTGGTGCTTGTTGAA................................................................................ 20 0 1 1.00 1 1 0 0
.............................................................................TTTTTCACAACAGGCACTTACTA.................................................................................................................... 23 0 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGGGGTGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
.................................................................................................................TAGCTTAGGTGGTGCTTGTTGAA................................................................................ 23 1 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGAGGTGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGAGCTTGTTGCAG............................................................................... 22 2 1 1.00 1 1 0 0
...................................................................................................................GCTTGGGTGGTGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGCTGCTTGTTGA................................................................................. 20 1 1 1.00 1 1 0 0
.................................................................................................................CAGCTTAGGTGGTGCTTGTTGAAG............................................................................... 24 2 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGTGCTTGTTAAAG............................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGTGCTTGTTGAAT............................................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................................TGATTAGGTGGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTAGTGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................................AGCTTAGGTAGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................................AGCTTAGGCGGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
................................................................................................................TTTGCTTAGGTGGTGCTTATTGAA................................................................................ 24 2 1 1.00 1 1 0 0
................................................................................................................AACGCTTAGGTGGTGCTTGTTGA................................................................................. 23 2 1 1.00 1 1 0 0
...............................................................................................................TATCGCTTAGGTGGTGCTTGTTGA................................................................................. 24 1 1 1.00 1 1 0 0
.............................................................................TTATTCACAACAGGCCCTTACTAA................................................................................................................... 24 2 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTGGTGCTTGTTGAAGA.............................................................................. 24 1 1 1.00 1 1 0 0
...............................................................................TTTCACAACACGCACTTACTAA................................................................................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTGGTGCTTGTTGATG............................................................................... 23 2 1 1.00 1 1 0 0
...............................................................................................................TGTTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 26 2 1 1.00 1 1 0 0
...............................................................................................................ATTTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 26 2 1 1.00 1 1 0 0
......................................................................................................................TAGGTGGTGCTTGTTGAA................................................................................ 18 0 1 1.00 1 1 0 0
..............................................................................TTTTCACAACAGGCACTTA....................................................................................................................... 19 0 1 1.00 1 1 0 0
................................................................................................................TTTGCTTAGGTGGTGCTTGTTGAAA............................................................................... 25 2 1 1.00 1 1 0 0
..................................................................................................................TCCTTAGGTGGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
..................................................................................................................AAATTAGGTGGTGCTTGTTGAAG............................................................................... 23 3 3 1.00 3 3 0 0
..................................................................................................................AGCTTAGGTGGTGCTTGTTGAGGA.............................................................................. 24 2 1 1.00 1 1 0 0
..............................................................................ATTTCACAACAGGCACTTACTA.................................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................ATTTAGGTGGTGCTTGTTGAAG............................................................................... 22 2 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGTGCTTGTTGACG............................................................................... 22 1 1 1.00 1 1 0 0
.................................................................................................................AGACTTAGGTGGTGCTTGTTGAAG............................................................................... 24 3 1 1.00 1 1 0 0
...............................................................................TTTCACAAAAGGCACTTACTAA................................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................CCTTAGGTGGTGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
.................................................................................................................AAGCTTAGGTGGTGCTTGTTGAA................................................................................ 23 2 1 1.00 1 1 0 0
...............................................................................TTTCACAAGAGGCACTTACTAA................................................................................................................... 22 1 1 1.00 1 1 0 0
..............................................................................CTTTCACACCAGGCACTTACTA.................................................................................................................... 22 2 1 1.00 1 1 0 0
................................................................................................................TGTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 25 2 1 1.00 1 1 0 0
.............................................................................ATTTTCACAACAGGCACTTACTAA................................................................................................................... 24 1 1 1.00 1 1 0 0
..................................................................................................................CGCTTAGGTGGTGCTTGTTGAAG............................................................................... 23 0 1 1.00 1 1 0 0
..................................................................................................................TGCTTACGTGGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
...............................................................................................................TTTTGCTTAGGTGGTGCTTGTTGAA................................................................................ 25 1 1 1.00 1 1 0 0
.............................................................................................................TTTATCGCTTAGGTGGTGCTTGTTGA................................................................................. 26 3 1 1.00 1 1 0 0
...................................................................................................................GCTTAGCTGGTGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 0 0 1
......................................................................................................................TAGGTGGTGCTTGTTG.................................................................................. 16 0 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTGGTGCTTGTTG.................................................................................. 20 1 1 1.00 1 1 0 0
...............................................................................TTTCACAACAGGCACTTAATAA................................................................................................................... 22 1 1 1.00 1 1 0 0
..................................................................................................................AGCTTAGGTGGTGCTTGTTG.................................................................................. 20 1 1 1.00 1 1 0 0
................................................................................TTCACAACAGCCACTTACTAA................................................................................................................... 21 1 1 1.00 1 0 1 0
...............................................................................................................TGATGCTTAGGTGGTGCTTGTTGAAG............................................................................... 26 3 1 1.00 1 1 0 0
..................................................................................................................AGCTTAGGTGGTGCTTGTTGAAGAAAACT......................................................................... 29 3 1 1.00 1 1 0 0
.....................................................................................................................TTAGGTGGTGCTTGTTGAA................................................................................ 19 0 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTGGTCCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
.................................................................................................................TAGCTTAGGTGGTGCTTGTTG.................................................................................. 21 1 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGTGCTTGTTGAAGAAA............................................................................ 25 1 1 1.00 1 1 0 0
................................................................................................................CTTGCTTAGGTGGTGCTTGTTGAAG............................................................................... 25 2 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTGGTGCCTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
..............................................................................GATTCACAACAGGCACTTACTAA................................................................................................................... 23 2 1 1.00 1 1 0 0
.................................................................................................................TTACTTAGGTGGTGCTTGTTGAAG............................................................................... 24 2 1 1.00 1 1 0 0
..................................................................................................................TGCTTAGGTGGTGCTTGCTGA................................................................................. 21 2 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGTGCTTGTTG.................................................................................. 19 0 1 1.00 1 1 0 0
...............................................................................TTTCACACCAGGCCCTTACTAA................................................................................................................... 22 2 1 1.00 1 1 0 0
..............................................................................TTTTCACAACAAGCACTTACTAA................................................................................................................... 23 1 1 1.00 1 1 0 0
...................................................................................................................GCTTAGGTGGAGCTTGTTGAAG............................................................................... 22 1 1 1.00 1 1 0 0
...............................................................................TTTCACAACAGGCACTTATTAA................................................................................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................................AATCGCTTAGGTGGTGCTTGTTGA................................................................................. 24 2 1 1.00 1 1 0 0
..................................................................................................................AGCTTAGGTGGTGCTTGTTGACG............................................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................................CTTAGGTGGTGCTTGTTG.................................................................................. 18 0 1 1.00 1 0 0 1
...................................................................................................................GCTTAGGTAGTGCTTGTTGCAG............................................................................... 22 2 1 1.00 1 1 0 0
.................................................................................TCACAACAGGCACTTACTAA................................................................................................................... 20 0 1 1.00 1 1 0 0
..................................................................................................................TGCTAAGGTGGTGCTTGTTGAAG............................................................................... 23 2 1 1.00 1 1 0 0
...................................................................................................................AATTAGGTGGTGCTTGTTGAA................................................................................ 21 2 2 0.50 1 1 0 0
..................................................................................................................TACTTAGGTGGTGCTTGTTGATG............................................................................... 23 3 2 0.50 1 1 0 0
..............................................................................TTTTCACCACAGGCACTTA....................................................................................................................... 19 1 2 0.50 1 1 0 0
...................................................................................................................AATTAGGCGGTGCTTGTTGAAG............................................................................... 22 3 2 0.50 1 1 0 0
...................................................................................................................TTTTAGGTGGTGCTTGTTGAAG............................................................................... 22 2 3 0.33 1 1 0 0
.....................................................................................................................AAAGGTGGTGCTTGTTGAAG............................................................................... 20 2 7 0.29 2 2 0 0
..............................................................................TTTTCACACCAGGCCCTTAATAA................................................................................................................... 23 3 4 0.25 1 1 0 0
..................................................................................................................TCCTAAGGTGGTGCTTGTTGAAG............................................................................... 23 3 4 0.25 1 1 0 0
..................................................................................................................GAATTAGGTGGTGCTTGTTGAAG............................................................................... 23 3 6 0.17 1 1 0 0
..................................................................................................................TTATTAGGTGGTGCTTGTTGAAG............................................................................... 23 3 7 0.14 1 1 0 0
..................................................................................................................TACTTCGGTGGTGCTTGTTGAA................................................................................ 22 3 10 0.10 1 1 0 0
...................................................................................................................TTTTAGGTGGTGCTTGTTGAAT............................................................................... 22 3 20 0.05 1 1 0 0

Generated: 04/30/2015 at 05:48 PM