ID:

rno-mir-3583

 Coordinate:

chr5:150732605-150732694 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AGGAATCATCTGGGGAGGGTCTCTTATAAAACGCTCATGTTTTACGTATTCACTAATGGTGAGCATGAAGAGTTCAGATCACGTTCATGAAGTGCTGATGAACCTGACTTCTCTCTTCATGCAGTTGTCTATCTTGGTGCATCCTGACAAAAACCAGGACGATGCTGACAGAGCACAGAAGGCTTTTGAA
********************************************......((((((.(((((((((((((((...((.(((.((((((.........)))))).)))))...)))))))))).....)).))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...........................................................TGAGCATGAAGAGTTCAGATCACGT.......................................................................................................... 25 0 1 3.00 3 3 0
.....................................................................................................ACCTGACTTCTCTCTTCATGCAT.................................................................. 23 1 1 3.00 3 3 0
......................................................................................................CCTGACTTCTCTCTTCATGCAGT................................................................. 23 0 1 2.00 2 2 0
......................................................................................................CCTGACTTCTCTCTTCATGCA................................................................... 21 0 1 2.00 2 2 0
..............................................................................................................................GTCTATCTTGGTGCATCCTGACAAA....................................... 25 0 1 2.00 2 2 0
.............................................................AGCATGAAGAGTTCAGATCACGT.......................................................................................................... 23 0 1 2.00 2 2 0
......................................................................................................CCTGACTTCTCTCATCATGCAGT................................................................. 23 1 1 1.00 1 1 0
............................................................GAGCATGAAGAGTTCAGATCACGT.......................................................................................................... 24 0 1 1.00 1 1 0
.....................................................................................................................................................AAAACCAGGACGATGCTGACAGAGCACAGAAG......... 32 0 1 1.00 1 0 1
......................................................................................................CCTGACTTCTCTCTTCATGCAT.................................................................. 22 1 1 1.00 1 1 0
......................................................................................................CCTGACTTCTCTCTTCATGCAG.................................................................. 22 0 1 1.00 1 0 1
.............................................................AGCATGAAGAGTTCAGATCACGTT......................................................................................................... 24 0 1 1.00 1 1 0
................................................................................................................................................TGACAAAAACCAGGACGATGCTGACAG................... 27 0 1 1.00 1 0 1
.....................................................................................................ACCTGACTTCTCTCTTCATGCATT................................................................. 24 1 1 1.00 1 1 0

Anti-sense strand reads

TCCTTAGTAGACCCCTCCCAGAGAATATTTTGCGAGTACAAAATGCATAAGTGATTACCACTCGTACTTCTCAAGTCTAGTGCAAGTACTTCACGACTACTTGGACTGAAGAGAGAAGTACGTCAACAGATAGAACCACGTAGGACTGTTTTTGGTCCTGCTACGACTGTCTCGTGTCTTCCGAAAACTT
**************************************************......((((((.(((((((((((((((...((.(((.((((((.........)))))).)))))...)))))))))).....)).))))))))).******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:45 PM