ID:rno-mir-3576 |
Coordinate:chr6:133877812-133877926 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
GCACCATGCACCATGCAGCCCTTTACACAACCATCTTGTCATCCAGGAAGTCCGCCAGGGCAGTATTTGATACTCGAAAAGAAATTACCCTTGTATGATTCATCCAAAAGAGCAAACACACCAAGGATAATTTCTCCTCAAGTATGAAACAGTAGCACAGCAGGAATGCCAGCATCCGTCGGTCACTCTTGGGAGTGACCACCACTCCCCACACC
***********************************..........(((.((((....))))....(((.(((((.((..((((((((.(((((..((.....((.....)).....))...))))).))))))))..)).))))).))).....((...(((....)))..)).)))...*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total |
|---|
|
CGTGGTACGTGGTACGTCGGGAAATGTGTTGGTAGAACAGTAGGTCCTTCAGGCGGTCCCGTCATAAACTATGAGCTTTTCTTTAATGGGAACATACTAAGTAGGTTTTCTCGTTTGTGTGGTTCCTATTAAAGAGGAGTTCATACTTTGTCATCGTGTCGTCCTTACGGTCGTAGGCAGCCAGTGAGAACCCTCACTGGTGGTGAGGGGTGTGG
***********************************..........(((.((((....))))....(((.(((((.((..((((((((.(((((..((.....((.....)).....))...))))).))))))))..)).))))).))).....((...(((....)))..)).)))...*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528819 10dpp_testes |
GSM1528818 Adult_testes_Mili_IP |
GSM1528817 Adult_testes |
|---|---|---|---|---|---|---|---|---|
| ...........................................................................CTTTTCTTTAATGGGAACATAC...................................................................................................................... | 22 | 0 | 1 | 66.00 | 66 | 66 | 0 | 0 |
| ..................................................................................................................TTGTGTGGTTCCTATTAAAGAGG.............................................................................. | 23 | 0 | 1 | 55.00 | 55 | 55 | 0 | 0 |
| ...........................................................................CTTTTCTTTAATGGGAACATACT..................................................................................................................... | 23 | 0 | 1 | 40.00 | 40 | 40 | 0 | 0 |
| .........................................................................TGCTTTTCTTTAATGGGAACATA....................................................................................................................... | 23 | 1 | 1 | 37.00 | 37 | 37 | 0 | 0 |
| ..........................................................................TCTTTTCTTTAATGGGAACATAC...................................................................................................................... | 23 | 1 | 1 | 29.00 | 29 | 29 | 0 | 0 |
| ..........................................................................ACTTTTCTTTAATGGGAACATAC...................................................................................................................... | 23 | 1 | 1 | 26.00 | 26 | 26 | 0 | 0 |
| ...................................................................................................................TGTGTGGTTCCTATTAAAGAGG.............................................................................. | 22 | 0 | 1 | 23.00 | 23 | 21 | 2 | 0 |
| .................................................................................................................TTTGTGTGGTTCCTATTAAAGAGG.............................................................................. | 24 | 0 | 1 | 21.00 | 21 | 21 | 0 | 0 |
| ..........................................................................GCTTTTCTTTAATGGGAACATA....................................................................................................................... | 22 | 0 | 1 | 18.00 | 18 | 16 | 0 | 2 |
| .........................................................................AGCTTTTCTTTAATGGGAACATA....................................................................................................................... | 23 | 0 | 1 | 13.00 | 13 | 13 | 0 | 0 |
| .................................................................................................................GCTGTGTGGTTCCTATTAAAGAGG.............................................................................. | 24 | 2 | 1 | 12.00 | 12 | 0 | 12 | 0 |
| ............................................................................TTTTCTTTAATGGGAACATAC...................................................................................................................... | 21 | 0 | 1 | 10.00 | 10 | 10 | 0 | 0 |
| ...................................................................................................................GCTGTGGTTCCTATTAAAGAGG.............................................................................. | 22 | 2 | 2 | 10.00 | 20 | 0 | 20 | 0 |
| ...................................................................................................................TGTGTGGTTCCTATTAAAGAG............................................................................... | 21 | 0 | 1 | 8.00 | 8 | 8 | 0 | 0 |
| ................................................................................................................GCTTGTGTGGTTCCTATTAAAGAGG.............................................................................. | 25 | 1 | 1 | 8.00 | 8 | 0 | 8 | 0 |
| ..........................................................................ACTTTTCTTTAATGGGAACATA....................................................................................................................... | 22 | 1 | 1 | 8.00 | 8 | 8 | 0 | 0 |
| ..........................................................................TCTTTTCTTTAATGGGAACATACT..................................................................................................................... | 24 | 1 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| ..........................................................................ACTTTTCTTTAATGGGAACATACT..................................................................................................................... | 24 | 1 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| ....................................................................................................................GTGTGGTTCCTATTAAAGAGG.............................................................................. | 21 | 0 | 1 | 6.00 | 6 | 1 | 5 | 0 |
| ...........................................................................CTTTTCTTTAATGGGAACATA....................................................................................................................... | 21 | 0 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| .......................................................................TTTGCTTTTCTTTAATGGGAACATA....................................................................................................................... | 25 | 2 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| .................................................................................................................ATTGTGTGGTTCCTATTAAAGAGG.............................................................................. | 24 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ...........................................................................CTTTTCTTTAAGGGGAACATAC...................................................................................................................... | 22 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ........................................................................TAGCTTTTCTTTAATGGGAACATA....................................................................................................................... | 24 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ..........................................................................TCTTTTCTTTAATGGGAACATA....................................................................................................................... | 22 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ..................................................................................................................TTGTGTGGTTCCTATTAAAGAG............................................................................... | 22 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ............................................................................TTTTCTTTAATGGGAACATACT..................................................................................................................... | 22 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ..........................................................................GCTTTTCTTTAAGGGGAACATA....................................................................................................................... | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .......................................................................TATGCTTTTCTTTAATGGGAACATA....................................................................................................................... | 25 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .........................................................................AACTTTTCTTTAATGGGAACATAC...................................................................................................................... | 24 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................................................................TTTGTGTGGTTCCTATTAAAGAG............................................................................... | 23 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...........................................................................CTTTTCTTTAATGGGAACATACA..................................................................................................................... | 23 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ..........................................................................GCTTTTCTTTAATGGGAACATAC...................................................................................................................... | 23 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ........................................................................TTGCTTTTCTTTAATGGGAACATA....................................................................................................................... | 24 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .......................................................................AATGCTTTTCTTTAATGGGAACATA....................................................................................................................... | 25 | 3 | 3 | 1.33 | 4 | 4 | 0 | 0 |
| ..................................................................................................................TCGTGTGGTTCCTATTAAAGAGG.............................................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................................TTTCTTTAATGGGAACATACTA.................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................TGCTTTTCTTTAAAGGGAACATA....................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................AAAGCTTTTCTTTAATGGGAACATA....................................................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................................TGTGTGGTTCCTATTACAGAGG.............................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................................TTGAGTGGTTCCTATTAAAGAGG.............................................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ......................................................................................................................GTGGTTCCTATTAAAGAGG.............................................................................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................................ATGTGTGGTTCCTATTAAAGAGG.............................................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................................AGTGTGGTTCCTATTAAAGAGG.............................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................................TTCTGTGGTTCCTATTAAAGAGG.............................................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ........................................................................TAGCTTTTCTTTACTGGGAACATA....................................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................TGCTTTTCTTTAAGGGGAACATA....................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................TGCTTTTCTTTTATGGGAACATA....................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTAATGGGAACATGC...................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................AGCTTTTCTTTAATGGGAACATAC...................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ....................................................................................................................GTGTGGTTCCTATTAAAGAG............................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTTATGGGAACATACT..................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................................................................GCTTGTGTGGTTCATATTAAAGAGG.............................................................................. | 25 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ...................................................................................................................TGTGTGGTTCCTATTAACGAGG.............................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................................TTTTCTTCAATGGGAACATAC...................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................................ATTTCTTTAATGGGAACATA....................................................................................................................... | 20 | 1 | 2 | 1.00 | 2 | 2 | 0 | 0 |
| ................................................................................................................TTTTGTGTGGTTCCTATTAAAGAGG.............................................................................. | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTAATGGGAAC.......................................................................................................................... | 18 | 0 | 2 | 1.00 | 2 | 2 | 0 | 0 |
| ..........................................................................ACTTTTCTTTAATGGGAACATACA..................................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTAATGGGAACCTAC...................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................AGAGCTTTTCTTTAATGGGAACAT........................................................................................................................ | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................AGCTTTTCTTTAATGAGAACATA....................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................................TCTTTTCTTTAATGGGAACATACTA.................................................................................................................... | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................TACTTTTCTTTAATGGGAACATACT..................................................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .............................................................................TTTCTTTAATGGGAACATACTAT................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTAATCGGAACATAC...................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 |
| ..........................................................................TATTTTCTTTAATGGGAACATAC...................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTAAAGGGAACATAC...................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................AATTTTTCTTTAATGGGAACATAC...................................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................................ACTTTTCTTTAATGGGAACCTAC...................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................................TTTTTTCTTTAATGGGAACATAC...................................................................................................................... | 23 | 2 | 2 | 1.00 | 2 | 2 | 0 | 0 |
| ...........................................................................CTTTTCTTTCATGGGAACATACT..................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ............................................................................TTTTCTTTAATGGGAACATA....................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................................TGTGTGGTACCTATTAAAGAGG.............................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..............................................................................................................TAATTTGTGTGGTTCCTATTAAAGAGG.............................................................................. | 27 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................ATCTTTTCTTTAATGGGAACATA....................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................TGCTTTTCTCTAATGGGAACATA....................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................................TGTGTGGTTCCCATTAAAGAGG.............................................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ...........................................................................CTTTTCTTTAACGGGAACATAC...................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................................................................TTGTGTCGTTCCTATTAAAGAGG.............................................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................................TGTGTGGTTCCTATTAAA.................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................................GCTTTTCATTAATGGGAACATA....................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................................TGTTTTCTTTAATGGGAACATAC...................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..........................................................................GCTTTTCTTTAGTGGGAACATA....................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................................................................TATGTGTGGTTCCTATTAAAGAG............................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTCATGGGAACATAC...................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................................TGTGGTTCCTATTAAAGAGG.............................................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ...........................................................................CTTTTCTTTAATGGGACCATACT..................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .........................................................................TGCTTCTCTTTAATGGGAACATA....................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................................TGTGTGGTTCCTATTA.................................................................................... | 16 | 0 | 3 | 0.67 | 2 | 2 | 0 | 0 |
| .................................................................................................................GCTGTGTGGTCCCTATTAAAGAGG.............................................................................. | 24 | 3 | 3 | 0.67 | 2 | 0 | 2 | 0 |
| ..........................................................................TCTTTTCTTTAATGGGAACATAT...................................................................................................................... | 23 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .................................................................................................................GCAGTGTGGTTCCTATTAAAGAGG.............................................................................. | 24 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 |
| ..........................................................................ACTTTACTTTAATGGGAACATACT..................................................................................................................... | 24 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .................................................................................................................GCCGTGTGGTTCCTATTAAAGAGG.............................................................................. | 24 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 |
| .........................................................................TGCTTTTCTTTACTGGGAACATA....................................................................................................................... | 23 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ...................................................................................................................TGTGTGGTTCCTATTAA................................................................................... | 17 | 0 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTCACGGGAACATACT..................................................................................................................... | 23 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| ..........................................................................ACTTTTCTTTATTGGGAACATA....................................................................................................................... | 22 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTAGTGGGAACATAC...................................................................................................................... | 22 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| ..........................................................................ACTTTTCTTTAATCGGAACATACT..................................................................................................................... | 24 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 |
| ...........................................................................ATTTTCTTTAAGGGGAACATAC...................................................................................................................... | 22 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 |
| ...........................................................................CTTTTCTTTAATGGGAACGGA....................................................................................................................... | 21 | 2 | 7 | 0.14 | 1 | 1 | 0 | 0 |
| .........................................................................TGCTTTTCTTTAATGGGAAACTA....................................................................................................................... | 23 | 3 | 8 | 0.13 | 1 | 1 | 0 | 0 |
| ..............................................................................TTCTTTAATGGGAACATACTCTT.................................................................................................................. | 23 | 3 | 12 | 0.08 | 1 | 0 | 0 | 1 |
Generated: 04/30/2015 at 05:48 PM