ID:

rno-mir-3559

 Coordinate:

chrX:75459241-75459355 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.5 -45.3

Sense Strand Reads

AAATGAGGAACCCTGGGAAGACAACGAGGATGAAAGTCAAGGTAAGTAGGCTCAGAAGAAAGCCTTTTTCTCTCTGCGTGACAGACTTAGTACTACATGATCCATGTTAATGAAACTAATGTAGTACTGAGTCTGTCGTGCAGTGAGTAAAAAAATCCAAAGAGATTTGATAAGCATAACAACTACATAAGTGCGCCCTGGGTGGGGGGGGTGGA
***************************************************************.((((((((.(((((((((((((((((((((((((....(((....)))......))))))))))))))))))))))))).))).)))))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
..............................................................................TGACAGACTTAGTACTACATGA................................................................................................................... 22 0 1 216.00 216 211 5
..............................................................................TGACAGACTTAGTACTACATGAT.................................................................................................................. 23 0 1 88.00 88 88 0
..............................................................................TGACAGACTTAGTACTACATGAA.................................................................................................................. 23 1 1 28.00 28 28 0
..............................................................................TGACAGACTTAGTACTACATG.................................................................................................................... 21 0 1 24.00 24 23 1
..............................................................................TGACAGACTTAGTACTACAT..................................................................................................................... 20 0 1 21.00 21 21 0
..............................................................................TGACAGACTTAGTACTACATGAAA................................................................................................................. 24 2 1 11.00 11 11 0
......................................................................................................................ATGTAGTACTGAGTCTGTCGTGT.......................................................................... 23 1 1 7.00 7 7 0
..............................................................................TGACAGACTTAGTACTACATGT................................................................................................................... 22 1 1 6.00 6 6 0
...............................................................................GACAGACTTAGTACTACATGA................................................................................................................... 21 0 1 5.00 5 5 0
......................................................................................................................ATGTAGTACTGAGTCTGTCGTGA.......................................................................... 23 1 1 3.00 3 3 0
..............................................................................TGACAGACTTAGTCCTACATGAT.................................................................................................................. 23 1 1 3.00 3 3 0
.............................................................................ATGACAGACTTAGTACTACATGA................................................................................................................... 23 1 1 3.00 3 3 0
.......................................................................................................................TGTAGTACTGAGTCTGTCGTG........................................................................... 21 0 1 3.00 3 3 0
.......................................................................................................................TGTAGTACTGAGTCTGTCGTGT.......................................................................... 22 1 1 2.00 2 2 0
...............................................................................GACAGACTTAGTACTACATGAAA................................................................................................................. 23 2 1 2.00 2 2 0
..............................................................................TGACAGACTTAGTACTACA...................................................................................................................... 19 0 1 2.00 2 2 0
.............................................................................ATGACAGACTTAGTACTACATGAT.................................................................................................................. 24 1 1 2.00 2 2 0
..............................................................................TGACAGACTTAGTACTCCATGA................................................................................................................... 22 1 1 2.00 2 2 0
.......................................................................................................................TGTAGTACTGAGTCTGTCGTGCA......................................................................... 23 0 1 2.00 2 2 0
..............................................................................TGATAGACTTAGTACTACATGAT.................................................................................................................. 23 1 1 2.00 2 2 0
...............................................................................GACAGACTTAGTACTACATGAA.................................................................................................................. 22 1 1 2.00 2 2 0
..............................................................................GGACAGACTTAGTACTACATGAT.................................................................................................................. 23 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTAATACATGATT................................................................................................................. 24 2 1 1.00 1 1 0
.......................................................................................................................TGTCGTACTGAGTCTGTCGTG........................................................................... 21 1 1 1.00 1 1 0
...............................................................................GACAGACTTAGTACTACATGAC.................................................................................................................. 22 1 1 1.00 1 1 0
........................................................................................................................GTAGTACTGAGTCTGTCGTGA.......................................................................... 21 1 1 1.00 1 1 0
.......................................................................................................................TGTAGTACTGAGTCTGTCGTGCT......................................................................... 23 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTCCTACATGA................................................................................................................... 22 1 1 1.00 1 1 0
.............................................................................GTGACAGACTTAGTACTACATG.................................................................................................................... 22 0 1 1.00 1 0 1
..............................................................................TGTCAGACTTAGTACTACATGA................................................................................................................... 22 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGCT.................................................................................................................. 23 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGAG.................................................................................................................. 23 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGCACTACATGA................................................................................................................... 22 1 1 1.00 1 1 0
..............................................................................TGGCAGACTTAGTACTACAT..................................................................................................................... 20 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGATT................................................................................................................. 24 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTAGTACATGAA.................................................................................................................. 23 2 1 1.00 1 1 0
.......................................................................................................................TGTAGTACTGAGTCTGTCGT............................................................................ 20 0 1 1.00 1 1 0
...........................................................................AAATGACAGACTTAGTACTACATGA................................................................................................................... 25 3 1 1.00 1 1 0
........................................................................................................................GTAGTACTGAGTCTGTCGTGTT......................................................................... 22 2 1 1.00 1 1 0
......................................................................................................................ATGTAGTACTGAGTCTGTCGTAA.......................................................................... 23 2 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTCCATGAT.................................................................................................................. 23 1 1 1.00 1 1 0
..............................................................................TGACAGACTTCGTACTACATGA................................................................................................................... 22 1 1 1.00 1 1 0
......................................................................................................................TTGTAGTACTGAGTCTGTCGTGT.......................................................................... 23 2 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGATA................................................................................................................. 24 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGATCC................................................................................................................ 25 0 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGATC................................................................................................................. 24 0 1 1.00 1 1 0
..............................................................................TGACAGGCTTAGTACTACATG.................................................................................................................... 21 1 1 1.00 1 1 0
.............................................................................GTGACAGACTTAGTACTACA...................................................................................................................... 20 0 1 1.00 1 1 0
..............................................................................TGACAGACTTAATACTACATGC................................................................................................................... 22 2 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGAAC................................................................................................................. 24 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGAAAT................................................................................................................ 25 3 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGAC.................................................................................................................. 23 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGATCCTT.............................................................................................................. 27 1 1 1.00 1 1 0
.............................................................................TTGACAGACTTAGTACTACATGAT.................................................................................................................. 24 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTACATGG................................................................................................................... 22 1 1 1.00 1 1 0
..............................................................................TGACAGACTTAGTACTGCATAA................................................................................................................... 22 2 2 0.50 1 1 0
..............................................................................TGGCAGACTTAGTCCTACATGA................................................................................................................... 22 2 2 0.50 1 1 0
..............................................................................TGAAAGACTTAGTACTCCATGAT.................................................................................................................. 23 2 2 0.50 1 1 0
..............................................................................TGACAGACTTAGTACTACATGAAT................................................................................................................. 24 2 2 0.50 1 1 0
......................................................................................................................ATGTAGTACTGAGCCTGTCGTGAT......................................................................... 24 3 2 0.50 1 1 0
...............................................................................GACAGACTTAGAACTACATGAA.................................................................................................................. 22 2 4 0.25 1 1 0

Anti-sense strand reads

TTTACTCCTTGGGACCCTTCTGTTGCTCCTACTTTCAGTTCCATTCATCCGAGTCTTCTTTCGGAAAAAGAGAGACGCACTGTCTGAATCATGATGTACTAGGTACAATTACTTTGATTACATCATGACTCAGACAGCACGTCACTCATTTTTTTAGGTTTCTCTAAACTATTCGTATTGTTGATGTATTCACGCGGGACCCACCCCCCCCACCT
************************************************************.((((((((.(((((((((((((((((((((((((....(((....)))......))))))))))))))))))))))))).))).)))))..*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:51 PM