ID:

rno-mir-3473

 Coordinate:

chr13:44719335-44719401 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.4 -25.2 -25.1
mature
  1. chr10:75205084-75205106 +
  2. chr13:44719374-44719396 +
star

Sense Strand Reads

TAAAATGGTTTGGCAAAATGTTTTGGAAGTTAAGCATGTGTTTCTTTGACATCACAGTCCTATTTCTGCCCTCAAAGACAAAAATGATGTCTAGGGCTGGAGAGATGGCTAAGTGGGTAAAAGTGCTTGTTATACCAATTCGAAGACTTGAGTTTGATCCTTAGAAT
***********************************........((((.((.((((((((...((((((((((...(((((.......)))))))))).)))))...))))..)))))).)))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
.........................................................................................TCTAGGGCTGGAGAGATGGCTAA....................................................... 23 0 2 2.50 5 5
.........................................................................................TCTAGGGCTGGAGAGATGGCTAATT..................................................... 25 1 3 1.33 4 4
.........................................................................................TCTAGGGCTGGAGAGATGGCTA........................................................ 22 0 2 1.00 2 2
.........................................................................................TCTAGGGCTGGAGAGATGGCTAAGT..................................................... 25 0 1 1.00 1 1
.........................................................................................TCTAGGGCTGGAGAGATGGCTAT....................................................... 23 1 8 0.38 3 3
.........................................................................................TCTAGGGCTGGAGAGATGGCTAAAT..................................................... 25 1 8 0.38 3 3
.........................................................................................TCTAGGGCTGGAGAGATGGCTAAT...................................................... 24 1 7 0.29 2 2
.........................................................................................TCTAGGGCTGGAGAGATGGCTAAA...................................................... 24 1 20 0.25 5 5
.........................................................................................TCTAGGGCTGGAGAGATGGCAAT....................................................... 23 2 20 0.05 1 1
.........................................................................................TCTAGGGCTGGAGCGATGGCTAAA...................................................... 24 2 20 0.05 1 1

Anti-sense strand reads

ATTTTACCAAACCGTTTTACAAAACCTTCAATTCGTACACAAAGAAACTGTAGTGTCAGGATAAAGACGGGAGTTTCTGTTTTTACTACAGATCCCGACCTCTCTACCGATTCACCCATTTTCACGAACAATATGGTTAAGCTTCTGAACTCAAACTAGGAATCTTA
***********************************........((((.((.((((((((...((((((((((...(((((.......)))))))))).)))))...))))..)))))).)))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:35 PM