ID:

rno-mir-346

 Coordinate:

chr16:11250054-11250151 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-60.1 -59.9

Sense Strand Reads

GAGCCACAGAAGACAGGGCCAAGGTGCTGCAGCCAGGCGATTAGGAGGTCTCTGTGTTGGGCATCTGTCTGCCTGAGTGCCTGCCTCTCTGTTGCTCTGAAGGAGGCAGGGGCTGGGCCTGCAGCTGCCTGGGCAGAGCTGCTCCTTCGAGGGACACACGGCTGACTCCTCTCTCTGGTTACAGACTCACGACGTCAT
***********************************..(((..(((((..((((((..((((((.((((..((((.(((.((((((((.((..........)))))))))).)))))))..)))).)))))).))))))...))))))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP
.................................................................TGTCTGCCTGAGTGCCTGCCTCT.............................................................................................................. 23 0 1 34.00 34 33 1
.................................................................TGTCTGCCTGAGTGCCTGCCTCTAT............................................................................................................ 25 1 1 20.00 20 20 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTAA............................................................................................................ 25 2 1 12.00 12 12 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTT............................................................................................................. 24 1 1 10.00 10 10 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTA............................................................................................................. 24 1 1 9.00 9 9 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTTT............................................................................................................ 25 1 1 9.00 9 9 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTAAT........................................................................................................... 26 3 1 6.00 6 6 0
................................................................CTGTCTGCCTGAGTGCCTGCCTCTAA............................................................................................................ 26 2 1 4.00 4 4 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCAA............................................................................................................. 24 2 1 3.00 3 3 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTATT........................................................................................................... 26 2 1 2.00 2 2 0
................................................................ATGTCTGCCTGAGTGCCTGCCTCT.............................................................................................................. 24 1 1 2.00 2 2 0
................................................................CTGTCTGCCTGAGTGCCTGCCTCT.............................................................................................................. 24 0 1 2.00 2 2 0
..................................................................GTCTGCCTGAGTGCCTGCCTCTAT............................................................................................................ 24 1 1 2.00 2 2 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTTA............................................................................................................ 25 2 3 1.33 4 4 0
................................................................CTGTCTGCCTGAGTGCCTGCCTCTA............................................................................................................. 25 1 1 1.00 1 1 0
..................................................................GTCTGCCTGAGTGCCTGCCTCTTT............................................................................................................ 24 1 1 1.00 1 1 0
..................................................................GTCTGCCTGAGTGCCTGCCTCTA............................................................................................................. 23 1 1 1.00 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTTTA........................................................................................................... 26 2 1 1.00 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTTTT........................................................................................................... 26 2 1 1.00 1 1 0
.................................................................TGTCTGCCTGAGCGCCTGCCTCT.............................................................................................................. 23 1 1 1.00 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTC............................................................................................................... 22 0 1 1.00 1 1 0
.................................................................TGTCTGCCTGAGTGACTGCCTCTTTT........................................................................................................... 26 3 1 1.00 1 1 0
................................................................CTGTCTGCCTGAGTGCCTGCCTCTAT............................................................................................................ 26 1 1 1.00 1 1 0
..................................................................GTCTGCCTGAGTGCCTGCCTCTT............................................................................................................. 23 1 1 1.00 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTAC............................................................................................................ 25 2 1 1.00 1 1 0
.................................................................TGTCCGCCTGAGTGCCTGCCTCTCA............................................................................................................ 25 2 1 1.00 1 1 0
.................................................................TCTCTGCCTGAGTGCCTGCCTCTAT............................................................................................................ 25 2 1 1.00 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTAAA........................................................................................................... 26 3 1 1.00 1 1 0
.................................................................TGTCTGCCAGAGTGCCTGCCTCTAT............................................................................................................ 25 2 1 1.00 1 1 0
................................................................ATGTCTGCCTGAGTGCCTGCCTCTA............................................................................................................. 25 2 2 1.00 2 2 0
.................................................................TGTATGCCTGAGTGCCTGCCTCT.............................................................................................................. 23 1 1 1.00 1 1 0
.................................................................TGTCTGCCTGATTGCCTGCCTCTTT............................................................................................................ 25 2 2 0.50 1 1 0
................................................................ATGTCTGCCTGAGTGCCTGCCTCTAT............................................................................................................ 26 2 2 0.50 1 1 0
.................................................................TGTCTGCCTGAGTGCCTCCCTCTTT............................................................................................................ 25 2 2 0.50 1 1 0
................................................................CTATCTGCCTGAGAGCCTGCCTCTA............................................................................................................. 25 3 2 0.50 1 1 0
..................................................................GTCTGCCTGAGTGCCTGCCTCTTA............................................................................................................ 24 2 3 0.33 1 1 0
...............................................................TCTGTCTGCCTGAGTGCCTGCCTTA.............................................................................................................. 25 2 3 0.33 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTTAA........................................................................................................... 26 3 3 0.33 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCTTAT........................................................................................................... 26 3 5 0.20 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTCATA............................................................................................................ 25 3 6 0.17 1 1 0
.................................................................TGTCTGCCTGAGTTCCTGCCTCTA............................................................................................................. 24 2 11 0.09 1 1 0
.................................................................TGTATGCCTGAGTGCCTGCCTCTAA............................................................................................................ 25 3 15 0.07 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCAAAT.............................................................................................................. 23 3 19 0.05 1 1 0
.................................................................TGTCTGCCTGAGTGCCTGCCTATTTA........................................................................................................... 26 3 20 0.05 1 1 0

Anti-sense strand reads

CTCGGTGTCTTCTGTCCCGGTTCCACGACGTCGGTCCGCTAATCCTCCAGAGACACAACCCGTAGACAGACGGACTCACGGACGGAGAGACAACGAGACTTCCTCCGTCCCCGACCCGGACGTCGACGGACCCGTCTCGACGAGGAAGCTCCCTGTGTGCCGACTGAGGAGAGAGACCAATGTCTGAGTGCTGCAGTA
***********************************..(((..(((((..((((((..((((((.((((..((((.(((.((((((((.((..........)))))))))).)))))))..)))).)))))).))))))...))))))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:36 PM