ID:rno-mir-345 |
Coordinate:chr6:132748968-132749063 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -43.9 | -43.6 | -43.3 |
 |
 |
 |
|
GAGAGGTGGTGTTTATCCTTAGAACTGAATGGACTCTTCGTGAAGCCGACACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGGCTTTGCGTCAGCTGGACGCCTTCTGATGGCAAGTGGTAAGAGGGAGAAGG
**************************************************...((((((((((.((...((((((((((.(((.((((((((...)))).)))).))).))))))))))...)).)))))))))).....******************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528819 10dpp_testes |
GSM1528817 Adult_testes |
GSM1528818 Adult_testes_Mili_IP |
|---|---|---|---|---|---|---|---|---|
| .................................................................TGCTGACCCCTAGTCCAGTGCT............................................................................................................. | 22 | 0 | 1 | 76.00 | 76 | 75 | 1 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTAT........................................................................................................... | 24 | 2 | 1 | 56.00 | 56 | 56 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTA............................................................................................................ | 23 | 1 | 1 | 39.00 | 39 | 39 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGC.............................................................................................................. | 21 | 0 | 1 | 38.00 | 38 | 37 | 0 | 1 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTAA........................................................................................................... | 24 | 2 | 1 | 38.00 | 38 | 38 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTT............................................................................................................ | 23 | 0 | 1 | 26.00 | 26 | 26 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTT........................................................................................................... | 24 | 1 | 1 | 24.00 | 24 | 24 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCT............................................................................................................. | 21 | 0 | 1 | 20.00 | 20 | 19 | 1 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTAAT.......................................................................................................... | 25 | 2 | 1 | 14.00 | 14 | 14 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGA.............................................................................................................. | 21 | 1 | 1 | 8.00 | 8 | 7 | 1 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTAA........................................................................................................... | 23 | 2 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTTT.......................................................................................................... | 25 | 1 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTAT........................................................................................................... | 23 | 2 | 2 | 6.50 | 13 | 13 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTATT.......................................................................................................... | 25 | 2 | 1 | 6.00 | 6 | 6 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCAT............................................................................................................ | 23 | 1 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| ....................................................................TGACCCCTAGTCCAGTGCTTGT.......................................................................................................... | 22 | 0 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCAA............................................................................................................ | 23 | 2 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTAAA.......................................................................................................... | 25 | 3 | 1 | 5.00 | 5 | 5 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTGA........................................................................................................... | 24 | 2 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTA........................................................................................................... | 24 | 1 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTTT........................................................................................................... | 23 | 1 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTTTT.......................................................................................................... | 24 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTAATT......................................................................................................... | 26 | 3 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ........................................................................................................CCTGAACTAGGGGTCTGGAGA....................................................................... | 21 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCGA............................................................................................................ | 23 | 2 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTG............................................................................................................... | 20 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ................................................................ATGCTGACCCCTAGTCCAGTGCTTT........................................................................................................... | 25 | 2 | 1 | 3.00 | 3 | 2 | 1 | 0 |
| ....................................................................TGACCCCTAGTCCAGTGCTTGTTT........................................................................................................ | 24 | 2 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTT............................................................................................................ | 22 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGC.............................................................................................................. | 20 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTTTT......................................................................................................... | 26 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTCA........................................................................................................... | 24 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTAAA.......................................................................................................... | 24 | 3 | 2 | 2.00 | 4 | 4 | 0 | 0 |
| ........................................................................................................CCTGAACTAGGGGTCTGGAGT....................................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTTGT.......................................................................................................... | 24 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCAAA........................................................................................................... | 24 | 3 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTAG.......................................................................................................... | 25 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTG............................................................................................................ | 23 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTAA.......................................................................................................... | 25 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ...................................................................CTGACCCCTAGTCCAGTGCT............................................................................................................. | 20 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ....................................................................TGACCCCTAGTCCAGTGCTTGTAGT....................................................................................................... | 25 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTTTA......................................................................................................... | 26 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCA............................................................................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| ................................................................ATGCTGACCCCTAGTCCAGTGCTATT.......................................................................................................... | 26 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCTTAGTCCAGTGCTTAA.......................................................................................................... | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTAGA.......................................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTAC........................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTAT.......................................................................................................... | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................ATGCTGACCCCTAGTCCAGTGCTA............................................................................................................ | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCTCTAGTCCAGTGCT............................................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGAAT............................................................................................................ | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTACAGTGC.............................................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGCCCAGTGCT............................................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTTTTTT........................................................................................................ | 26 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTTA.......................................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................................................................................................................GACGCCTTCTGATGGCAAGTGGTAAGAGG....... | 29 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTGA........................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTTTTT......................................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTGT.......................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTACT.......................................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTTAC.......................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................CCCTGAACTAGGGGTCTGGA......................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTAAT.......................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................ATGCTGACCCCTAGTCCAGTGCTAT........................................................................................................... | 25 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTCGTCCAGTGCTT............................................................................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTAGA.......................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCAG............................................................................................................ | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTATT.......................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGA.............................................................................................................. | 20 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 |
| ...................................................................CTGACCCCTAGTCCAGTGCTTGT.......................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTG............................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTTTTA........................................................................................................ | 27 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTAACCCCTAGTCCAGTGCTTT........................................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ................................................................TTGCTGACCCCTAGTCCAGTGCTA............................................................................................................ | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCCGTGC.............................................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTTA........................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTATA.......................................................................................................... | 25 | 3 | 2 | 1.00 | 2 | 2 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTA............................................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCA............................................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCGT............................................................................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCAAGTCCAGTGCT............................................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ....................................................................TGACCCCTAGTCCAGTGCTTGTA......................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ........................................................................................................CCTGAACTAGGGGTCTGGAGAAA..................................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCCGTGCTAA........................................................................................................... | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ....................................................................TGACCCCTAGTCCAGTGCTTGTGTT....................................................................................................... | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTACTA............................................................................................................ | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................................................................GCTGACCCCTAGTCCAGTGCTTGA.......................................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .................................................................AGCTGACCCCTAGTCCAGTGCTAA........................................................................................................... | 24 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ........................................................................................................CCTGAACTAGGGGTCTGGAGTA...................................................................... | 22 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCCAA........................................................................................................... | 24 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ..................................................................GCTCACCCCTAGTCCAGTGCTAA........................................................................................................... | 23 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTTTAA......................................................................................................... | 26 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTCCTA............................................................................................................ | 23 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTGCTATTT......................................................................................................... | 26 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| .................................................................TGCTGACCCCTTGTCCAGTGCTTAA.......................................................................................................... | 25 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| .................................................................TACTGACCCCTAGTCCAGTGCTAT........................................................................................................... | 24 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| .................................................................TGCTCACCCCTAGTCCAGTGCAA............................................................................................................ | 23 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 |
| ........................................................................................................CCTGAACTAGGGGTCTGGAGTAT..................................................................... | 23 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 |
| .................................................................TTCTGACCCCTAGCCCAGTGC.............................................................................................................. | 21 | 2 | 9 | 0.11 | 1 | 0 | 1 | 0 |
| .................................................................TGCTGACCCCTAGTCCAGTTAA............................................................................................................. | 22 | 3 | 10 | 0.10 | 1 | 1 | 0 | 0 |
|
CTCTCCACCACAAATAGGAATCTTGACTTACCTGAGAAGCACTTCGGCTGTGGGTTCAGGTCCGGACGACTGGGGATCAGGTCACGAACACCACCGATGACCCGGGACTTGATCCCCAGACCTCTGGACCCAAACTAGAGGTGTCCGAAACGCAGTCGACCTGCGGAAGACTACCGTTCACCATTCTCCCTCTTCC
********************************************************...((((((((((.((...((((((((((.(((.((((((((...)))).)))).))).))))))))))...)).)))))))))).....************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528819 10dpp_testes |
|---|---|---|---|---|---|---|
| ................................................................ATTGACTGGGGATCAGGTCACGAA............................................................................................................ | 24 | 3 | 2 | 1.00 | 2 | 2 |
Generated: 04/30/2015 at 05:46 PM