ID:

rno-mir-341

 Coordinate:

chr6:133733240-133733335 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.7 -50.6 -50.6

Sense Strand Reads

AGACACTGCAACACTCTTACCACCTAGGTCACTAGGATGAGGATAGGGTTAAAATGATGATGTCAGTTGGCCGGTCGGCCGATCGCTCGGTCTGTCAGTCAGTCGGTCGGTCGATCGGTCGGTCGGTCAGTCGGCTTCCTGTCTTCGAGCTGCAATCATTCGTATGAGAAAGCAAACAGGAAATACTTTGCCACAC
***********************************..(((((((((((......(((((((.....(((((((((((((((((((((.((.((...)))))).)))))))))))))))))))...)))).)))...)))))))))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
..............................................................................................................TCGATCGGTCGGTCGGTCAGT................................................................. 21 0 1 29.00 29 28 1 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGT..................................................................... 21 0 1 15.00 15 13 2 0
.............................................................................................................GTCGATCGGTCGGTCGGTCAGT................................................................. 22 0 1 14.00 14 14 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGT..................................................................... 22 0 1 7.00 7 5 2 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGTAA................................................................... 24 1 1 6.00 6 6 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGTA.................................................................... 23 1 1 6.00 6 6 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGG...................................................................... 20 0 1 6.00 6 6 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTTA................................................................... 23 1 1 5.00 5 5 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGA..................................................................... 22 1 1 3.00 3 2 1 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTT.................................................................... 22 1 12 2.25 27 24 3 0
..............................................................................................................TCGATCGGTCGGTCGGTCAGTCG............................................................... 23 0 1 2.00 2 0 0 2
..........................................................................................................TCGGTCGATCGGTCGGTCGGTA.................................................................... 22 1 1 2.00 2 2 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGG...................................................................... 21 0 1 2.00 2 2 0 0
..............................................................................................................TCGATCGGTCGGTCGGTCAG.................................................................. 20 0 1 2.00 2 2 0 0
...............................................................................................................CGATCGGTCGGTCGGTCAGT................................................................. 20 0 1 2.00 2 2 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTCAGT................................................................. 25 0 1 2.00 2 2 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTAAT.................................................................. 24 2 1 2.00 2 2 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTAT................................................................... 23 2 15 1.93 29 29 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTTCG.................................................................. 24 2 10 1.70 17 0 0 17
..............................................................................................................TCGATCGGTCGGTCGGTCAGTAT............................................................... 23 2 2 1.50 3 3 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGCG.................................................................... 22 2 2 1.50 3 0 0 3
.............................................................................................................GTCGATCGGTCGGTCGGTCAGA................................................................. 22 1 1 1.00 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTAA................................................................... 23 1 1 1.00 1 1 0 0
..............................................................................................................TCGATCGGTCGGTCGGTCAGTA................................................................ 22 1 1 1.00 1 1 0 0
.............................................................................................................GTCGATCGGTCGGTCGGTCAGTA................................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................................TCGATCGGTCGGTCGGTCAGTT................................................................ 22 1 2 1.00 2 2 0 0
.............................................................................................................ATCGATCGGTCGGTCGGTCAGT................................................................. 22 1 1 1.00 1 0 1 0
...............................................................................................................CGATCGGTAGGTCGGTCAGT................................................................. 20 1 1 1.00 1 1 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGTAAAT................................................................. 26 2 1 1.00 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTAC................................................................... 23 2 2 1.00 2 2 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGGAA................................................................... 24 2 1 1.00 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTAAGT................................................................. 25 1 1 1.00 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCG....................................................................... 19 0 1 1.00 1 0 1 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGTAAT.................................................................. 25 2 1 1.00 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGAAA................................................................... 23 2 1 1.00 1 1 0 0
...........................................................................................................CGGTCGATCGGTCGGTCGGTTA................................................................... 22 1 1 1.00 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTTAA.................................................................. 24 2 1 1.00 1 1 0 0
.......................................................................CGGTCGGCCGATCGCTCGGTCTGTG.................................................................................................... 25 1 1 1.00 1 1 0 0
.............................................................................................................GTGGATCGGTCGGTCGGTCAGT................................................................. 22 1 1 1.00 1 1 0 0
..............................................................................................................TCGATCGGTCGGTCGGTCAGTAGT.............................................................. 24 2 1 1.00 1 1 0 0
.............................................................................................................GTCGATCGGTCGGTCGGTCAGTAT............................................................... 24 2 2 1.00 2 2 0 0
.............................................................................................................GTCGATCGGTCGGTCGGTCAGTT................................................................ 23 1 1 1.00 1 1 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGTAT................................................................... 24 2 15 0.80 12 12 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTTAT.................................................................. 24 2 4 0.75 3 3 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGC..................................................................... 22 1 2 0.50 1 1 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGAT.................................................................... 23 2 12 0.42 5 5 0 0
..............................................................................................................TCGATCGGTCGGTCGGTCAGTTT............................................................... 23 2 5 0.40 2 2 0 0
..............................................................................................................TCGATCGGTCGGTGGGTCAGTAA............................................................... 23 3 3 0.33 1 1 0 0
.........................................................................................................GTCGGTCGCTCGGTCGGTCGGAAA................................................................... 24 3 3 0.33 1 1 0 0
..............................................................................................................TCGATCGGTCGGTCGGTCAGTAAA.............................................................. 24 3 4 0.25 1 1 0 0
..............................................................................................................TCGATCGGTCGGTCGGTCAGTTA............................................................... 23 2 4 0.25 1 1 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGTT.................................................................... 23 1 12 0.25 3 3 0 0
..........................................................................................................TCGGTCGATCGGTAGGTCGGTTCG.................................................................. 24 3 11 0.18 2 0 0 2
..........................................................................................................TCGGTCGATCGGTCGGTCGACG.................................................................... 22 3 6 0.17 1 0 0 1
.............................................................................................................ATCGATCGGTCGGTCGG...................................................................... 17 1 6 0.17 1 0 1 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTCG................................................................... 23 1 20 0.15 3 0 0 3
..........................................................................................................TCGGTCGATCGGTCGGTCGGTCTAT................................................................. 25 2 11 0.09 1 1 0 0
..........................................................................................................TCGGGCGATCGGTCGGTCGGTT.................................................................... 22 2 12 0.08 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTATAT................................................................. 25 3 13 0.08 1 1 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGTGT................................................................... 24 2 14 0.07 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCCGTCGGTT.................................................................... 22 2 14 0.07 1 1 0 0
...........................................................................................................CGGTCGATCGGTCGGTCGGTAT................................................................... 22 2 16 0.06 1 1 0 0
.........................................................................................................GTCGGTCGATCGGTCGGTCGGTATTT................................................................. 26 3 16 0.06 1 1 0 0
..........................................................................................................TCGGTCGATCGGTCGGTCGGTATA.................................................................. 24 3 17 0.06 1 1 0 0
...........................................................................................................CGGTCGATCGGCCGGTCGGTAT................................................................... 22 3 17 0.06 1 1 0 0
................................................TTAACATGATGGTGTCAGTT................................................................................................................................ 20 2 20 0.05 1 0 1 0
..............................................................................................................CCGCTCGGTCGGTCGGTCAGT................................................................. 21 2 20 0.05 1 0 0 1
..........................................................................................................TCGGTCGATCGGTCGGTCGTTCG................................................................... 23 2 20 0.05 1 0 0 1
..........................................................................................................TCGGTCGATCGGTCGGTCGGTAG................................................................... 23 2 20 0.05 1 1 0 0

Anti-sense strand reads

TCTGTGACGTTGTGAGAATGGTGGATCCAGTGATCCTACTCCTATCCCAATTTTACTACTACAGTCAACCGGCCAGCCGGCTAGCGAGCCAGACAGTCAGTCAGCCAGCCAGCTAGCCAGCCAGCCAGTCAGCCGAAGGACAGAAGCTCGACGTTAGTAAGCATACTCTTTCGTTTGTCCTTTATGAAACGGTGTG
***********************************..(((((((((((......(((((((.....(((((((((((((((((((((.((.((...)))))).)))))))))))))))))))...)))).)))...)))))))))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
.....................................................................................................................................CGAATGACAGAAGCTC............................................... 16 1 20 0.05 1 1

Generated: 04/30/2015 at 05:47 PM