ID:

rno-mir-337

Coordinate:

chr6:133705920-133706016 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.5 -48.8 -48.8

Sense Strand Reads

TACCCGTTGTCTGCGCTTCTTGCATTGCTTCTTCAAGAGAGGAGGGTCCCAGTGTAGTGAGAAGTTGGGGGGTGGGAACGGCGTCATGCAGGAGTTGATTGCACAGCCATTCAGCTCCTATATGATGCCTTTCTTCACCCCCTTCAACCGCGTGTGGCGTCCGGACCCTCCTCTGCACCTTGGACTGCTTAGGGACG
***************************************************************...((((((((((((.(((((((((.(((((((((.((......)).))))))))).))))))))).))).)))))))))....**************************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528818
Adult_testes_Mili_IP
GSM1528817
Adult_testes
..............................................................................CGGCGTCATGCAGGAGTTGATT................................................................................................. 22 0 1 185.00 185 176 7 2
..............................................................................................................TCAGCTCCTATATGATGCCTTT................................................................. 22 0 1 79.00 79 54 24 1
..............................................................................CGGCGTCATGCAGGAGTTGAT.................................................................................................. 21 0 1 27.00 27 24 0 3
..............................................................................CGGCGTCATGCAGGAGTTGATTT................................................................................................ 23 1 1 24.00 24 24 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATTA................................................................................................ 23 1 1 24.00 24 20 4 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTA................................................................ 23 1 1 23.00 23 23 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTAT................................................................. 23 1 1 17.00 17 17 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTT................................................................ 23 1 1 14.00 14 14 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTAT................................................................ 24 2 1 14.00 14 14 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTAA............................................................... 24 2 1 13.00 13 13 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTT................................................................. 23 0 1 13.00 13 13 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTAA................................................................. 23 2 1 11.00 11 11 0 0
............................................................................AACGGCGTCATGCAGGAGTTGA................................................................................................... 22 0 1 9.00 9 9 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCT................................................................... 21 0 1 8.00 8 8 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTTA................................................................ 24 1 1 6.00 6 6 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTAT............................................................... 24 1 1 6.00 6 6 0 0
...............................................................................GGCGTCATGCAGGAGTTGATT................................................................................................. 21 0 1 5.00 5 5 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTTT................................................................ 24 1 1 5.00 5 5 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTTAT............................................................... 25 1 1 4.00 4 4 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATTAT............................................................................................... 24 2 1 4.00 4 4 0 0
............................................................................AACGGCGTCATGCAGGAGTTGAA.................................................................................................. 23 1 1 4.00 4 4 0 0
..............................................................................................................TCAGCTCCTATATGATGCCT................................................................... 20 0 1 4.00 4 4 0 0
................................................................................................................AGCTCCTATATGATGCCTTTCTT.............................................................. 23 0 1 4.00 4 4 0 0
..............................................................................CGGCGTCATGCAGGAGTTGA................................................................................................... 20 0 1 4.00 4 4 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATTTT............................................................................................... 24 2 1 3.00 3 3 0 0
................................................................................................................AGCTCCTATATGATGCCTTTCTTCT............................................................ 25 1 1 3.00 3 3 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATA................................................................................................. 22 1 1 3.00 3 3 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTAG................................................................ 24 2 1 3.00 3 3 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATTTA............................................................................................... 24 2 1 3.00 3 3 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTCTAT............................................................... 25 2 1 3.00 3 3 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATTGT............................................................................................... 24 1 1 3.00 3 3 0 0
..............................................................................CGGCGTCACGCAGGAGTTGATT................................................................................................. 22 1 1 3.00 3 3 0 0
............................................................................AACGGCGTCATGCAGGAGTTGATGT................................................................................................ 25 2 1 3.00 3 3 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTT.................................................................. 21 0 1 3.00 3 3 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTAAT............................................................... 24 2 1 3.00 3 3 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTA................................................................. 23 1 1 3.00 3 3 0 0
...............................................................................................................CAGCTCCTATATGATGCCTTTA................................................................ 22 1 1 3.00 3 3 0 0
.............................................................................ACGGCGTCATGCAGGAGTTGATT................................................................................................. 23 0 1 3.00 3 2 0 1
.............................................................................................................TTCAGCTCCTATATGATGCCTCT................................................................. 23 1 1 3.00 3 3 0 0
...........................................................................GAACGGCGTCATGCAGGAGTTG.................................................................................................... 22 0 1 2.00 2 2 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTCTT................................................................ 24 2 1 2.00 2 2 0 0
.............................................................................................................ATCAGCTCCTATATGATGCCTTTAT............................................................... 25 2 1 2.00 2 2 0 0
................................................................................................................AGCTCCTATATGATGCCTTTTTT.............................................................. 23 1 1 2.00 2 2 0 0
..............................................................................CGGCGTCATGCAGGAGTTG.................................................................................................... 19 0 1 2.00 2 2 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTA................................................................. 22 1 1 2.00 2 2 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTTT............................................................... 24 1 1 2.00 2 2 0 0
..............................................................................CGGCGTCATGCCGGAGTTGATT................................................................................................. 22 1 1 2.00 2 1 1 0
...........................................................................GAACGGCGTCATGCAGGAGTTGAA.................................................................................................. 24 1 1 2.00 2 2 0 0
...............................................................................GGCGTCATGCAGGAGTTGATTT................................................................................................ 22 1 1 2.00 2 2 0 0
...............................................................................................................CAGCTCCTATATGATGCCTTTTA............................................................... 23 2 1 2.00 2 2 0 0
.............................................................................ACGGCGTCATGCAGGAGTTGA................................................................................................... 21 0 1 2.00 2 2 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTATT................................................................ 24 2 1 2.00 2 2 0 0
..............................................................................CGGTGTCATGCAGGAGTTGATT................................................................................................. 22 1 1 2.00 2 2 0 0
..............................................................................CGGCGTCATGCAGGCGTTGATT................................................................................................. 22 1 1 2.00 2 2 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTTAA............................................................... 25 2 1 2.00 2 2 0 0
.............................................................................................................ATCAGCTCCTATATGATGCCTTTT................................................................ 24 2 2 1.50 3 3 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTAA................................................................ 24 2 2 1.50 3 3 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTGA............................................................... 24 2 2 1.50 3 3 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTCATT............................................................... 25 3 2 1.50 3 3 0 0
.............................................................................................................TTAAGCTCCTATATGATGCCT................................................................... 21 1 1 1.00 1 1 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTAG............................................................... 24 2 1 1.00 1 1 0 0
................................................................................................................AGCTCCTATATGATGCCTTTTAT.............................................................. 23 2 1 1.00 1 1 0 0
..............................................................................CGGAGTCATGCAGGCGTTGATT................................................................................................. 22 2 1 1.00 1 1 0 0
............................................................................AACGGCGTCATGCAGGAGTTGC................................................................................................... 22 1 1 1.00 1 1 0 0
................................................................................................................AGCTCCTATATGATGCCTAT................................................................. 20 1 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTGT................................................................ 24 2 1 1.00 1 1 0 0
..............................................................................CGGCATCATGCAGGAGTTGATTT................................................................................................ 23 2 1 1.00 1 1 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTAA................................................................ 23 2 2 1.00 2 2 0 0
...............................................................................GGCGTCATGCAGGAGTTGCTT................................................................................................. 21 1 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATTATT.............................................................................................. 25 3 1 1.00 1 1 0 0
.................................................................................CGTCATGCAGGAGTTGATTT................................................................................................ 20 1 1 1.00 1 1 0 0
.................................................................................................................GCTCCTATATGATGCCTTTA................................................................ 20 1 1 1.00 1 1 0 0
...............................................................................................................CAGCTCCTATATGATGCCTTT................................................................. 21 0 1 1.00 1 1 0 0
..............................................................................CGCCGTCATGCAGGAGTTGATT................................................................................................. 22 1 1 1.00 1 1 0 0
..................................................................................................................CTCCTATATGATGCCTTTA................................................................ 19 1 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTAAAT............................................................... 25 3 1 1.00 1 1 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTTAT.............................................................. 25 2 1 1.00 1 1 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTTAAA.............................................................. 25 3 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGCAGGCGTTGATTT................................................................................................ 23 2 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGTAGGAGTTGATA................................................................................................. 22 2 1 1.00 1 1 0 0
...........................................................................GAACGGCGTCATGCAGGAGTTGA................................................................................................... 23 0 1 1.00 1 1 0 0
..............................................................................CGGAGTCATGCAGGAGTTGAT.................................................................................................. 21 1 1 1.00 1 1 0 0
.................................................................................CGTCATGCAGGAGTTGAT.................................................................................................. 18 0 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTTAAA.............................................................. 26 3 1 1.00 1 1 0 0
..............................................................................CGGCGTCCTGCAGGAGTTGATT................................................................................................. 22 1 1 1.00 1 1 0 0
..............................................................................................................ACAGCTCCTATATGATGCCTTT................................................................. 22 1 1 1.00 1 1 0 0
................................................................................................................AGCTCCTATATGATGCCTTTCTTTA............................................................ 25 1 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTATAA............................................................... 25 3 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGCGGGAGTTGATT................................................................................................. 22 1 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTATTT............................................................... 25 2 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTAAATT.............................................................. 26 3 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTGTATGATGCCTTT................................................................. 23 1 1 1.00 1 1 0 0
...........................................................................GAGCGGCGTCATGCAGGAGTTG.................................................................................................... 22 1 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATAAGA.............................................................................................. 25 3 1 1.00 1 1 0 0
.............................................................................ACGGCGTCATGCAGGAGTTGAT.................................................................................................. 22 0 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGCAGCAGTTGAT.................................................................................................. 21 1 1 1.00 1 1 0 0
..............................................................................CGGAGTCATGCAGGAGTTGATTA................................................................................................ 23 2 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCCTTA................................................................ 24 2 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATTTTT.............................................................................................. 25 3 1 1.00 1 1 0 0
............................................................................................................AATCAGCTCCTATATGATGCCTTTT................................................................ 25 2 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTCA................................................................. 23 2 2 1.00 2 2 0 0
..............................................................................................................TCAGCTCCTATATTATGCCTTT................................................................. 22 1 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGCAGAAGTTGATT................................................................................................. 22 1 1 1.00 1 1 0 0
................................................................................GCGTCATGCAGGAGTTGATT................................................................................................. 20 0 1 1.00 1 1 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTG................................................................. 22 1 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTAAATGATGCCTTT................................................................. 23 1 1 1.00 1 1 0 0
..............................................................................................................TCAGCTCCTACATGATGCCTTTAT............................................................... 24 2 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTT.................................................................. 22 0 1 1.00 1 1 0 0
...........................................................................GAACGGCGTCATGCAGGAGTTAA................................................................................................... 23 1 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCC.................................................................... 20 0 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTCAAT............................................................... 25 3 1 1.00 1 1 0 0
..............................................................................................................TCAGCTCCTATATGATGCCC................................................................... 20 1 2 1.00 2 2 0 0
..............................................................................CGGCGTCATGCAGGAGTTGATTAA............................................................................................... 24 2 1 1.00 1 1 0 0
..............................................................................CGGCGTCATGCAGGAGATGATTA................................................................................................ 23 2 1 1.00 1 1 0 0
............................................................................AACGGCGTCATGCAGGAGTTGAAT................................................................................................. 24 1 1 1.00 1 1 0 0
............................................................................TACGGCGTCATGCAGGAGTTGA................................................................................................... 22 1 1 1.00 1 1 0 0
............................................................................AACGGCGTCATGCAGGAGTTG.................................................................................................... 21 0 1 1.00 1 1 0 0
..............................................................................CGGCGGCATGCAGGAGTTGATCG................................................................................................ 23 2 1 1.00 1 0 1 0
.............................................................................................................TTCAGCTCCTATATGATGCCTTTC................................................................ 24 0 1 1.00 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTAAA................................................................ 24 3 3 0.67 2 2 0 0
.............................................................................................................ATCAGCTCCTATATGATGCCTTTAA............................................................... 25 3 3 0.67 2 2 0 0
...............................................................................GGCGTCATGCAGGAGTCGATTT................................................................................................ 22 2 2 0.50 1 1 0 0
..............................................................................CGGCGTCCTGCAGGAGGTGATTA................................................................................................ 23 3 2 0.50 1 0 1 0
..............................................................................................................TCAGCTCCTATATGATGCCTCA................................................................. 22 2 4 0.50 2 1 1 0
..............................................................................................................GCAGCTCCTATATGATGCCTTTAA............................................................... 24 3 2 0.50 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTCAT................................................................ 24 3 5 0.40 2 2 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTAAT................................................................ 24 3 3 0.33 1 1 0 0
.................................................................................CGTCATGCAGGAGTTGATTTT............................................................................................... 21 2 3 0.33 1 1 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTTGAA............................................................... 24 3 3 0.33 1 1 0 0
.............................................................................................................TTCAGCTCCTGTATGATGCCTATTT............................................................... 25 3 3 0.33 1 1 0 0
.................................................................................................................GCTCCTATATGATGCCTATTT............................................................... 21 2 4 0.25 1 1 0 0
..............................................................................................................TCAGCTCCTATATGATGCCTAAAT............................................................... 24 3 4 0.25 1 1 0 0
..............................................................................................................CCAGCTCCTATCTGATGCCTTT................................................................. 22 2 4 0.25 1 1 0 0
.............................................................................................................TTCAGCTCCTATATGATGCCTCTGA............................................................... 25 3 5 0.20 1 1 0 0
....................................................................................CATGCAGGAGTTGAT.................................................................................................. 15 0 5 0.20 1 0 0 1
..............................................................................................................TCAGCTCCTATCTGTTGCCTTT................................................................. 22 2 8 0.13 1 1 0 0

Anti-sense strand reads

ATGGGCAACAGACGCGAAGAACGTAACGAAGAAGTTCTCTCCTCCCAGGGTCACATCACTCTTCAACCCCCCACCCTTGCCGCAGTACGTCCTCAACTAACGTGTCGGTAAGTCGAGGATATACTACGGAAAGAAGTGGGGGAAGTTGGCGCACACCGCAGGCCTGGGAGGAGACGTGGAACCTGACGAATCCCTGC
**************************************************...((((((((((((.(((((((((.(((((((((.((......)).))))))))).))))))))).))).)))))))))....***************************************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
......................................................................AGACCCTTGCCGCAGTACGTCCTCA...................................................................................................... 25 2 1 3.00 3 3
........................................................................ACCCTTGCCGCAGTACGTCCTCA...................................................................................................... 23 0 1 2.00 2 2
......................................................................AATCCCTTGCCGCAGTACGTCCTCA...................................................................................................... 25 3 1 1.00 1 1

Generated: 04/30/2015 at 05:46 PM