ID:

rno-mir-330

 Coordinate:

chr1:80092681-80092777 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.8 -41.8 -41.5

Sense Strand Reads

TAGTGACTCCGGTCTTCCAGGATCGCGTGCCTACCACATCGTGCTGTGTGACCCTTTGGCGATCTCTGCCTCTCTGGGCCTGTGTCTTAGGCTCTTCAAGATCTAACGAGCAAAGCACAGGGCCTGCAGAGAGGTAGCGCTCTGCTCCTTACTCGCCTGATCATTCCAGACCCGCAGAGTCCGGGGTTAGTGGGAGA
*******************************************************..((((....(((((((((((((((((((.(((..((((.............)))).))))))).))))..)))))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGA................................................................. 23 0 1 105.00 105 104 0 1
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGT............................................................... 24 1 1 42.00 42 42 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAG................................................................ 24 0 1 30.00 30 16 14 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCT........................................................................................................ 23 0 1 24.00 24 24 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGT.............................................................. 25 0 1 19.00 19 19 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAG................................................................ 23 0 1 19.00 19 19 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGG............................................................... 24 0 1 17.00 17 17 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGA............................................................... 24 1 1 14.00 14 14 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGA................................................................. 22 0 1 13.00 13 11 0 2
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGT............................................................... 25 1 1 11.00 11 11 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGGT.............................................................. 26 0 1 11.00 11 11 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAA................................................................ 24 1 1 11.00 11 11 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTT............................................................. 26 1 1 9.00 9 9 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGG............................................................... 25 0 1 8.00 8 8 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTCT...................................................................................................... 25 0 1 8.00 8 8 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAA................................................................ 23 1 1 7.00 7 7 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAAT............................................................... 24 2 1 5.00 5 5 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTAAT..................................................................................................... 26 2 1 4.00 4 4 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTAA...................................................................................................... 25 2 1 4.00 4 4 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGA............................................................... 25 1 1 4.00 4 4 0 0
.....................................................................ATCTCTGGGCCTGTGTCTTAGGCT........................................................................................................ 24 1 1 4.00 4 4 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTTTT..................................................................................................... 26 1 1 4.00 4 4 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTA....................................................................................................... 24 1 1 4.00 4 4 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAT................................................................ 23 1 1 4.00 4 4 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAT................................................................ 24 1 1 4.00 4 4 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGTAT............................................................... 25 3 1 3.00 3 3 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTTT...................................................................................................... 25 1 1 3.00 3 3 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTTTA........................................................... 28 3 1 3.00 3 3 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTTT............................................................ 27 2 1 3.00 3 3 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTTTT........................................................... 28 3 1 3.00 3 3 0 0
...............................................................................................................AAAGCACAGGGCCTGCAGAGAG................................................................ 22 0 1 3.00 3 3 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAG.................................................................. 22 0 1 3.00 3 2 0 1
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGA.............................................................. 25 1 1 2.00 2 2 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGT................................................................. 22 1 1 2.00 2 2 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGAT............................................................. 26 2 1 2.00 2 2 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGGTT............................................................. 27 1 1 2.00 2 2 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGATT............................................................... 25 2 1 2.00 2 2 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTC....................................................................................................... 24 0 1 2.00 2 2 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTAT............................................................ 27 1 1 2.00 2 2 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTTA............................................................ 27 2 1 2.00 2 2 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTTA...................................................................................................... 25 2 1 2.00 2 2 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTAA............................................................ 27 1 1 2.00 2 2 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGATT............................................................... 24 2 1 2.00 2 2 0 0
...............................................................................................................AAAGCACAGGGCCTGCAGAGA................................................................. 21 0 1 2.00 2 2 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTAT...................................................................................................... 25 1 1 2.00 2 2 0 0
................................................................................................................AAGCACAGGGCCTGCAGAGAGG............................................................... 22 0 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGTCCTGCAGAGA................................................................. 23 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAG........................................................................................................... 20 0 1 1.00 1 1 0 0
...........................................................................................................AAACAAAGCACAGGGCCTGCAGAGAGT............................................................... 27 3 1 1.00 1 1 0 0
.............................................................................................................GAAAAGCACAGGGCCTGCAGAGAG................................................................ 24 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGT................................................................. 23 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGTT.............................................................. 26 1 1 1.00 1 1 0 0
..............................................................................................................CAAAGCATAGGGCCTGCAGAGAG................................................................ 23 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTCGGCTCT...................................................................................................... 25 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGG.......................................................................................................... 21 0 1 1.00 1 0 0 1
.............................................................................................................GCAAAGCACAGAGCCTGCAGAGC................................................................. 23 2 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTACAGAGAGT............................................................... 24 2 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCA........................................................................................................ 23 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGATA................................................................. 23 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCAAAGGGCCTGCAGAAA................................................................. 23 2 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTA............................................................................................................ 19 0 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGTAA............................................................. 26 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGATAG................................................................ 24 1 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTAAA........................................................... 28 2 1 1.00 1 1 0 0
.............................................................................................................GCAACGCACAGGGCCTGCAGAGA................................................................. 23 1 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGTGT............................................................... 24 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGGAT............................................................. 27 2 1 1.00 1 1 0 0
.............................................................................................................GCACAGCACAGGGCCTGCAGAGA................................................................. 23 1 1 1.00 1 1 0 0
..............................................................................................................AAACGCACCGGGCCTGCAGAGAGG............................................................... 24 3 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAAT................................................................. 23 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGTCTGCAGAGAGG............................................................... 25 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTCTTAAT.................................................................................................. 29 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCCGAGA................................................................. 23 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGAT........................................................................................................ 23 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTCA...................................................................................................... 25 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTATA..................................................................................................... 26 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGTCTGCAGAGA................................................................. 23 1 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGACCTGCAGAGAGT............................................................... 24 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCCGAAA................................................................. 23 2 1 1.00 1 1 0 0
............................................................................................................AGCTAAGCACAGGGCCTGCAGGGAGA............................................................... 26 3 1 1.00 1 1 0 0
.............................................................................................................CCAAAGCACAGGGCCTGCAGAGA................................................................. 23 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGCG.................................................................. 22 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAAAA................................................................ 24 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGTTT............................................................. 27 2 1 1.00 1 1 0 0
............................................................................................................AGCAAAGCACAGGGCCTGCAGAGAGA............................................................... 26 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGACTGCAGAGA................................................................. 23 1 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTTGA........................................................... 28 2 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGTTT............................................................. 26 2 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAGGTA............................................................. 26 0 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAA.................................................................. 21 1 1 1.00 1 1 0 0
.............................................................................................................GCCCAGCACAGGGCCTGCAGAGAGGT.............................................................. 26 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACACGGCCTGCAGAGA................................................................. 23 1 1 1.00 1 1 0 0
...............................................................................................................AAAGCACAGGGCCTGCAGCGAG................................................................ 22 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGCGCCTGCAGAGG................................................................. 23 2 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAAA................................................................. 23 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGA......................................................................................................... 22 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGACTTAGGCTTA...................................................................................................... 25 3 1 1.00 1 1 0 0
..............................................................................................................CAACGCACAGGGCCTGCAGAGAGGA.............................................................. 25 2 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGCTT....................................................................................................... 24 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAAAG................................................................ 24 1 1 1.00 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGAGGA.............................................................. 26 1 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGAA........................................................................................................ 23 2 1 1.00 1 1 0 0
..............................................................................................................CAAAGCACAGGGCCTGCAGAGCGGTAT............................................................ 27 2 1 1.00 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGATT....................................................................................................... 24 2 3 0.67 2 2 0 0
......................................................................TCTCTGGGCCTGTGTCCTAGGCTA....................................................................................................... 24 2 2 0.50 1 1 0 0
.......................................................................CTCTGGGCCTGTGTCTTAGGAT........................................................................................................ 22 1 2 0.50 1 1 0 0
..............................................................................................................CACCGCACAGGGCCTGCAGAGA................................................................. 22 2 2 0.50 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGTT........................................................................................................ 23 1 2 0.50 1 1 0 0
......................................................................CCTCTGGGCCTGTGTCTTAGGCTTT...................................................................................................... 25 2 2 0.50 1 1 0 0
......................................................................TCTCCGGGCCTGTGTCTTAGGCGA....................................................................................................... 24 3 2 0.50 1 1 0 0
.............................................................................................................GCAAAGCACAGGGCCTGCAGAGTTT............................................................... 25 3 2 0.50 1 0 0 1
..............................................................................................................CAAAGCACAGGGCCTGCAGAGAAA............................................................... 24 2 3 0.33 1 1 0 0
.........................................................................CTGGGCCTGGGTCTTAGGCTATTT.................................................................................................... 24 3 4 0.25 1 1 0 0
..............................................................................................................CAAAGCACAGGACCTGCAGAGAAT............................................................... 24 3 4 0.25 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGAAA....................................................................................................... 24 3 8 0.13 1 1 0 0
..............................................................................................................CAGAGCACAGGGCCTGCAGAGATT............................................................... 24 3 8 0.13 1 1 0 0
......................................................................TCTCTGGGCCTGTGTCTTAGGTAA....................................................................................................... 24 3 11 0.09 1 1 0 0
......................................................................TCTCTGGGCCTGTGTC............................................................................................................... 16 0 19 0.05 1 0 0 1

Anti-sense strand reads

ATCACTGAGGCCAGAAGGTCCTAGCGCACGGATGGTGTAGCACGACACACTGGGAAACCGCTAGAGACGGAGAGACCCGGACACAGAATCCGAGAAGTTCTAGATTGCTCGTTTCGTGTCCCGGACGTCTCTCCATCGCGAGACGAGGAATGAGCGGACTAGTAAGGTCTGGGCGTCTCAGGCCCCAATCACCCTCT
**************************************************..((((....(((((((((((((((((((.(((..((((.............)))).))))))).))))..)))))))))))))))......******************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:29 PM