ID:

rno-mir-32

Coordinate:

chr5:73934255-73934324 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.6 -43.3 -43.3

Sense Strand Reads

ATGCACACATCACACCCTCTCCCCGAGGCTCCCATCCCGCTTGCTCTGGTGGGGATATTGCACATTACTAAGTTGCATGTTGTCACGGCCTCAATGCAATTTAGTGTGTGTGATATTCTCACATGAGTGCATGCACACAGTCTGGCTCTTGCTTGCTGGGATACAGCTTT
****************************************..((((..(((((((((((((((((.(((((((((((((..((....))..)).))))))))))))))))))))))))))))..))))...***************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528817
Adult_testes
GSM1528818
Adult_testes_Mili_IP
.......................................................TATTGCACATTACTAAGTTGCAT............................................................................................ 23 0 1 730.00 730 728 1 1
.......................................................TATTGCACATTACTAAGTTGCA............................................................................................. 22 0 1 154.00 154 153 1 0
.......................................................TATTGCACATTACTAAGTTGCAA............................................................................................ 23 1 1 107.00 107 107 0 0
.......................................................TATTGCACATTACTAAGTTGC.............................................................................................. 21 0 1 103.00 103 97 6 0
.......................................................TATTGCACATTACTAAGTTG............................................................................................... 20 0 1 87.00 87 82 4 1
.......................................................TATTGCACATTACTAAGTTGCAAA........................................................................................... 24 2 1 86.00 86 86 0 0
.......................................................TATTGCACATTACTAAGTTGCATT........................................................................................... 24 1 1 69.00 69 69 0 0
.......................................................TATTGCACATTACTAAGTTGCATA........................................................................................... 24 1 1 24.00 24 24 0 0
......................................................ATATTGCACATTACTAAGTTGCA............................................................................................. 23 0 1 18.00 18 18 0 0
........................................................ATTGCACATTACTAAGTTGCAT............................................................................................ 22 0 1 16.00 16 16 0 0
.......................................................TATTGCACATTACTAAGTTGCATGT.......................................................................................... 25 0 1 12.00 12 11 0 1
......................................................ATATTGCACATTACTAAGTTG............................................................................................... 21 0 1 11.00 11 11 0 0
.......................................................TATTGCACCTTACTAAGTTGCAT............................................................................................ 23 1 1 11.00 11 11 0 0
.......................................................TATTGCACATTACTAAGTTGCATG........................................................................................... 24 0 1 9.00 9 9 0 0
.......................................................TATTGCACATTACTAAGTTGCATTT.......................................................................................... 25 1 1 8.00 8 8 0 0
.......................................................TATTGCACATTACTAAGTTGCG............................................................................................. 22 1 1 7.00 7 1 0 6
.......................................................TATTGCACATTACCAAGTTGCAT............................................................................................ 23 1 1 7.00 7 7 0 0
......................................................ATATTGCACATTACTAAGTTGC.............................................................................................. 22 0 1 7.00 7 7 0 0
.......................................................TATTGCACATTACTAAGTTGCATGTTGT....................................................................................... 28 0 1 7.00 7 7 0 0
.......................................................TATTGCACATTACTAAGTTGCCT............................................................................................ 23 1 1 7.00 7 7 0 0
......................................................ATATTGCACATTACTAAGTTGCAT............................................................................................ 24 0 1 6.00 6 6 0 0
.......................................................TATTGCACATTACTAAGTTGCAAT........................................................................................... 24 2 1 6.00 6 6 0 0
.............................................................................................ATGCAATTTAGTGTGTGTGATAT...................................................... 23 0 1 5.00 5 5 0 0
..............................................................................................TGCAATTTAGTGTGTGTGATAT...................................................... 22 0 1 5.00 5 5 0 0
........................................................ATTGCACATTACTAAGTTGCAAT........................................................................................... 23 2 1 4.00 4 4 0 0
................................................................................................CAATTTAGTGTGTGTGATATT..................................................... 21 0 1 4.00 4 4 0 0
.......................................................TATTGCACATTACTAAGTTGCATAT.......................................................................................... 25 1 1 4.00 4 4 0 0
.......................................................TATTGCACATTACTAAGTTGCGT............................................................................................ 23 1 1 4.00 4 4 0 0
.......................................................TATTGCACATTACTAAGTTGCAAG........................................................................................... 24 1 1 4.00 4 4 0 0
.......................................................TATTGCACATTACTAAGTTGCATTG.......................................................................................... 25 2 1 4.00 4 4 0 0
.......................................................TATTGCACATTACTAAGTTGCATAA.......................................................................................... 25 2 1 4.00 4 4 0 0
........................................................ATTGCACATTACTAAGTTGCA............................................................................................. 21 0 1 4.00 4 4 0 0
........................................................ATTGCACATTACTAAGTTGCATGT.......................................................................................... 24 0 1 3.00 3 3 0 0
........................................................ATTGCACATTACTAAGTTGCAA............................................................................................ 22 1 1 3.00 3 3 0 0
.......................................................TATTGCACATTACTAAGTT................................................................................................ 19 0 1 3.00 3 3 0 0
.......................................................TATTGCACATTACTAAGTTGCATTA.......................................................................................... 25 2 1 3.00 3 3 0 0
......................................................ATATTGCACATTACTAAGTTGCAA............................................................................................ 24 1 1 3.00 3 3 0 0
........................................................ATTGCACATTACTAAGTTGCATT........................................................................................... 23 1 1 3.00 3 3 0 0
................................................................................................CAATTTAGTGTGTGTGATAT...................................................... 20 0 1 3.00 3 3 0 0
.........................................................TTGCACATTACTAAGTTG............................................................................................... 18 0 1 3.00 3 3 0 0
.......................................................TATTGCACATTACTAAGTTGCTT............................................................................................ 23 1 1 3.00 3 3 0 0
.............................................................................................ATGCAATTTAGTGTGTGTGATAC...................................................... 23 1 1 3.00 3 3 0 0
.......................................................TATTGCACATTACTAAGTTGCATTAA......................................................................................... 26 3 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGTTGCAGT........................................................................................... 24 2 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGTTGCATGA.......................................................................................... 25 1 1 2.00 2 2 0 0
.............................................................................................ATGCAATTTAGTGTGTGTGATATT..................................................... 24 0 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGGTGCA............................................................................................. 22 1 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGTTGCAAAA.......................................................................................... 25 3 3 2.00 6 6 0 0
.....................................................AATATTGCACATTACTAAGTTGCAT............................................................................................ 25 1 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGTTGCATGTTG........................................................................................ 27 0 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGTTGCAC............................................................................................ 23 1 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTCAGTTGCAT............................................................................................ 23 1 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGTTGCACA........................................................................................... 24 2 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGTTGCACT........................................................................................... 24 2 1 2.00 2 2 0 0
.......................................................TATTGCACATTACTAAGTTGCATAAA......................................................................................... 26 3 1 2.00 2 2 0 0
.............................................................ACATTACTAAGTTGCATATTGC....................................................................................... 22 2 2 2.00 4 4 0 0
.......................................................TATTGCACATTACTAAGTTGCT............................................................................................. 22 1 1 2.00 2 2 0 0
.......................................................TATTGCACCTTACTAAGTTGCCT............................................................................................ 23 2 1 2.00 2 2 0 0
....................................................................................................TTAGTGTGTGTGATATT..................................................... 17 0 1 2.00 2 0 2 0
...................................................AAAATATTGCACATTACTAAGTTGCAT............................................................................................ 27 3 1 2.00 2 2 0 0
.......................................................TATTGCACATCACTAAGTTGCAT............................................................................................ 23 1 1 2.00 2 2 0 0
........................................................ATTGCACATTACTAAGTTGCATGTTGT....................................................................................... 27 0 1 2.00 2 1 0 1
.......................................................TATTGCACATTACTAAGTTGCATGTTGTC...................................................................................... 29 0 1 2.00 2 2 0 0
........................................................ATTGCACATTACTAAGTTG............................................................................................... 19 0 1 2.00 2 2 0 0
................................................................................................CAATTTAGTGTGTGTGATATTT.................................................... 22 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTGCTAAGTTGCAA............................................................................................ 23 2 1 1.00 1 1 0 0
.............................................................................................ATGCAATTTAGTGTGTGTGATA....................................................... 22 0 1 1.00 1 1 0 0
.......................................................TATTGCACATTACAAAGTTGCA............................................................................................. 22 1 1 1.00 1 1 0 0
.......................................................TATTGCTCATTACTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
......................................................ATATTGCACATTACTAAGTTGCAAA........................................................................................... 25 2 1 1.00 1 1 0 0
.......................................................TCTTGCACATTACTAAGTTGCAA............................................................................................ 23 2 1 1.00 1 1 0 0
......................................................TTATTGCACATTACTAAGTTGCA............................................................................................. 23 1 1 1.00 1 1 0 0
........................................................ATTGCACATTACTAAGTTGCAAA........................................................................................... 23 2 2 1.00 2 2 0 0
.......................................................TATTGCAGATTACTCAGTTGCAT............................................................................................ 23 2 1 1.00 1 1 0 0
.......................................................TATAGCACATTCCTAAGTTGCATGTTG........................................................................................ 27 2 1 1.00 1 1 0 0
..........................................................TGCACATTACTAAGTTGCATTA.......................................................................................... 22 2 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCATGTT......................................................................................... 26 0 1 1.00 1 1 0 0
.......................................................TATTGCATCTTACTAAGTTGCAT............................................................................................ 23 2 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCGTT........................................................................................... 24 2 1 1.00 1 1 0 0
.......................................................TATTGCAGATTACTAAGTTGC.............................................................................................. 21 1 1 1.00 1 1 0 0
..............................................................................................TGCAATTTAGTGTGTGTGATATAA.................................................... 24 2 1 1.00 1 1 0 0
.......................................................TATTGCATATTACTAAGTTGCAA............................................................................................ 23 2 1 1.00 1 1 0 0
.......................................................TATTGCACCTTACTAAGTTGCGT............................................................................................ 23 2 1 1.00 1 1 0 0
.......................................................TATTGCACATTCCTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTGCTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
.............................................................................................ATGCAATTTAGTGTGTGTGATTT...................................................... 23 1 1 1.00 1 1 0 0
......................................................TTATTGCACATTACTAAGTTGCAT............................................................................................ 24 1 1 1.00 1 1 0 0
.......................................................TATTGCACACTACTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
.....................................................AATATTGCACATTTCTAAGTTGCAT............................................................................................ 25 2 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCAAC........................................................................................... 24 2 1 1.00 1 1 0 0
.......................................................AATTGCACCTTACTAAGTTGCATA........................................................................................... 24 3 1 1.00 1 1 0 0
.......................................................TATTGCACGTTCCTAAGTTGCAT............................................................................................ 23 2 1 1.00 1 1 0 0
...............................................................................................GCAATTTAGTGTGTGTGATATT..................................................... 22 0 1 1.00 1 1 0 0
.......................................................TATTGCACATTCCTAAGTTGCATG........................................................................................... 24 1 1 1.00 1 1 0 0
......................................................ATACTGCACATTACTAAGTTG............................................................................................... 21 1 1 1.00 1 1 0 0
.......................................................TATAGCACATTACTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCAG............................................................................................ 23 1 1 1.00 1 1 0 0
......................................................ATATTGCACACTACTAAGTTGCAT............................................................................................ 24 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGTAT............................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TATTACACATTACTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
................................................................................................CAATTTAGTGTGTGTGATACT..................................................... 21 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAGGTTGCATTT.......................................................................................... 25 2 1 1.00 1 1 0 0
..........................................................................................TCAATGCAATTTAGTGTGTGTGAT........................................................ 24 0 1 1.00 1 1 0 0
.......................................................GATTGCACATTACTCAGTTGCAT............................................................................................ 23 2 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCTA............................................................................................ 23 2 2 1.00 2 2 0 0
......................................................ATATTGCACATTACTAAGTTGAA............................................................................................. 23 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCATGAT......................................................................................... 26 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGAAT............................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTACAT............................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTCAGTTGCATA........................................................................................... 24 2 1 1.00 1 1 0 0
.......................................................TATTGCAAATTACTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TATTGCACCTTACTCAGTTGCAT............................................................................................ 23 2 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCAAAT.......................................................................................... 25 2 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTA............................................................................................... 20 1 1 1.00 1 1 0 0
......................................................ATATTGCACATTACTAAGTTGAAT............................................................................................ 24 1 1 1.00 1 1 0 0
.........................................................TTGCACATTACTAAGTTGC.............................................................................................. 19 0 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCATTTTT........................................................................................ 27 2 1 1.00 1 1 0 0
.......................................................TATTGCGCATTACTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TATTGCGCATTACTAAGTTGCAA............................................................................................ 23 2 1 1.00 1 1 0 0
........................................................ATTGCACATTACTAAGTTGCATG........................................................................................... 23 0 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGA.............................................................................................. 21 1 1 1.00 1 1 0 0
......................................................ATATTGCACATTACTAAGTTGCAG............................................................................................ 24 1 1 1.00 1 1 0 0
.......................................................TATTGCACCTTACTAAGTTGCA............................................................................................. 22 1 1 1.00 1 1 0 0
.......................................................TACTGCACATTACTAAGTTGCAT............................................................................................ 23 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGAA............................................................................................. 22 1 1 1.00 1 1 0 0
......................................................ATATTGAACATTACTAAGTTGCA............................................................................................. 23 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACTAACTTGCATGT.......................................................................................... 25 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACAAAGTCGCAT............................................................................................ 23 2 1 1.00 1 1 0 0
........................................................ATTGCACATTACTAAGTTGC.............................................................................................. 20 0 1 1.00 1 1 0 0
.......................................................TATTGCACATTACCAAGTTGCA............................................................................................. 22 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACAAAGTTGCAT............................................................................................ 23 1 1 1.00 1 0 0 1
.......................................................TATTGCACCTTACTAAGTTGCATT........................................................................................... 24 2 1 1.00 1 1 0 0
........................................................ATTGCACATTACTAAGTTGCATA........................................................................................... 23 1 1 1.00 1 1 0 0
................................................................................................CAATTTAGTGTGTGTGATATTA.................................................... 22 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTCCTAAGTTGCAG............................................................................................ 23 2 1 1.00 1 1 0 0
......................................................ATATTGCACATTACTAAGTTGCAAT........................................................................................... 25 2 1 1.00 1 1 0 0
......................................................ATATTGCATATTACTAAGTTGCA............................................................................................. 23 1 1 1.00 1 1 0 0
........................................................ATTGCACATTTCTAAGTTGCATGTTGT....................................................................................... 27 1 1 1.00 1 1 0 0
.......................................................TATTGCACATTACAAAGTTGC.............................................................................................. 21 1 1 1.00 1 1 0 0
........................................................ATTGCACATTACTACGTTGCAAT........................................................................................... 23 3 2 0.50 1 1 0 0
.......................................................TATTGCACATTACTCAGTTGC.............................................................................................. 21 1 2 0.50 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCTTT........................................................................................... 24 2 2 0.50 1 1 0 0
..........................................................TACACATTACTAAGTTGCAT............................................................................................ 20 1 2 0.50 1 1 0 0
.......................................................TGTTGCACATTACTAAGTTGCAA............................................................................................ 23 2 2 0.50 1 1 0 0
.......................................................TATTGCACATAACTAAGTAGCAT............................................................................................ 23 2 2 0.50 1 1 0 0
.......................................................TATTGCACCTTACTAAGTTGCAAT........................................................................................... 24 3 2 0.50 1 1 0 0
.......................................................TATTGCACATTACTAAGTAGCA............................................................................................. 22 1 2 0.50 1 1 0 0
.......................................................TATTGCACATTACTAAGTAGCAT............................................................................................ 23 1 2 0.50 1 1 0 0
.......................................................TATCGCACATTACTCAGTTGC.............................................................................................. 21 2 3 0.33 1 1 0 0
.......................................................TATTGCACCTTACTAAGTTGCTTT........................................................................................... 24 3 3 0.33 1 1 0 0
........................................................ATTGCACATTACTAAGTTGA.............................................................................................. 20 1 3 0.33 1 1 0 0
.......................................................TATTGCACATTACTAAGTTGCTAT........................................................................................... 24 3 4 0.25 1 1 0 0
..............................................................................................TGCAATTTAGTGTGTGTGATTA...................................................... 22 2 4 0.25 1 1 0 0
.......................................................TATTGCACCTTACTAAGTTGCAAA........................................................................................... 24 3 5 0.20 1 1 0 0
.......................................................TATTGCACATTCCTAAGTTGCAAA........................................................................................... 24 3 5 0.20 1 1 0 0
.......................................................TATTGCACATTACTCAGTTGCAAA........................................................................................... 24 3 6 0.17 1 1 0 0
.......................................................CATTGCACATTCCTAAGTTGCAG............................................................................................ 23 3 6 0.17 1 1 0 0
.......................................................TATTGCACATTCCTGAGGTGCAT............................................................................................ 23 3 7 0.14 1 1 0 0
.......................................................GATTGCACATTCCTAAGTTG............................................................................................... 20 2 11 0.09 1 1 0 0
.......................................................AATTGCACATTTCTCAGTTGCAT............................................................................................ 23 3 19 0.05 1 1 0 0
........................................................ATTGCACATCAATAAGTTGCAA............................................................................................ 22 3 20 0.05 1 1 0 0

Anti-sense strand reads

TACGTGTGTAGTGTGGGAGAGGGGCTCCGAGGGTAGGGCGAACGAGACCACCCCTATAACGTGTAATGATTCAACGTACAACAGTGCCGGAGTTACGTTAAATCACACACACTATAAGAGTGTACTCACGTACGTGTGTCAGACCGAGAACGAACGACCCTATGTCGAAA
***************************************..((((..(((((((((((((((((.(((((((((((((..((....))..)).))))))))))))))))))))))))))))..))))...****************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
.....................................................................................GCCGGACTGACGTTAAAT................................................................... 18 2 20 0.05 1 1

Generated: 04/30/2015 at 05:45 PM