ID:

rno-mir-30c-2

 Coordinate:

chr9:29562376-29562459 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. chr5:139699926-139699949 -
  2. chr9:29562389-29562412 +
star

Sense Strand Reads

GTTGTCCTGAGGCTTGTGCTGCTCACCGCCAACCTGCTGTAGAGAGCACTGAGTGACAGATACTGTAAACATCCTACACTCTCAGCTGTGAAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACTCTCTCTGCCTTGGAAATCAACTAAGAGAAATGATTTTTAAATGGCCTGTGTCTTGTAGTTG
************************************************(((((...((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))).)))))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
...............................................................TGTAAACATCCTACACTCTCAGCT................................................................................................. 24 0 2 64355.50 128711 128239 393 79
...............................................................TGTAAACATCCTACACTCTCAGC.................................................................................................. 23 0 2 6073.00 12146 12029 61 56
...............................................................TGTAAACATCCTACACTCTCAGCTT................................................................................................ 25 1 2 5361.00 10722 10687 31 4
...............................................................TGTAAACATCCTACACTCTCAGCTA................................................................................................ 25 1 2 3448.00 6896 6860 32 4
................................................................GTAAACATCCTACACTCTCAGCT................................................................................................. 23 0 2 2568.00 5136 5117 18 1
...............................................................TGTAAACATCCTACACTCTCAGCTAT............................................................................................... 26 1 2 2098.50 4197 4182 13 2
...............................................................TGTAAACATCCTACACTCTCAGCA................................................................................................. 24 1 2 1638.00 3276 3265 7 4
...............................................................TGTAAACATCCTACACTCTCAGCTTT............................................................................................... 26 1 2 1185.00 2370 2339 29 2
...............................................................TGTAAACATCCTACACTCTCAGCTAA............................................................................................... 26 2 2 1101.50 2203 2192 11 0
..............................................................ATGTAAACATCCTACACTCTCAGCT................................................................................................. 25 1 2 1074.50 2149 2125 3 21
...............................................................TGTAAACATCCTACACTCTCAG................................................................................................... 22 0 2 900.00 1800 1763 13 24
...............................................................TGTAAACATCCTACACTCTCAGA.................................................................................................. 23 1 2 863.50 1727 1680 17 30
...............................................................TGTAAACATCCTACACTCTCA.................................................................................................... 21 0 2 850.50 1701 1661 7 33
...............................................................TGTCAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 657.00 1314 1306 8 0
...............................................................TGTAAACATCCTACCCTCTCAGCT................................................................................................. 24 1 2 519.50 1039 1039 0 0
...............................................................TGTAAACATCCTACACTCTCAGCAA................................................................................................ 25 2 2 502.50 1005 1001 4 0
...............................................................TGTAAACATCCTACACTCTCAGT.................................................................................................. 23 1 2 435.50 871 870 0 1
...............................................................TGTAAACATCCTAAACTCTCAGCT................................................................................................. 24 1 2 299.50 599 592 7 0
...............................................................TGTAAACATCCTACACTCTCAGCAT................................................................................................ 25 2 2 296.00 592 579 13 0
................................................................GTAAACATCCTACACTCTCAGC.................................................................................................. 22 0 2 211.50 423 421 0 2
...............................................................TGTAAACATCCTACACTCTCAGCTAAA.............................................................................................. 27 3 2 209.00 418 418 0 0
................................................................GTAAACATCCTACACTCTCAGCTT................................................................................................ 24 1 2 204.00 408 408 0 0
...............................................................TGTAAACATCCTACACTCTCAACT................................................................................................. 24 1 2 197.50 395 393 2 0
...............................................................TGTAAACATCCTACACTCTCAGCTTA............................................................................................... 26 2 2 195.50 391 391 0 0
...............................................................TGTAAACATCCTACACTCTCACCT................................................................................................. 24 1 2 188.50 377 374 3 0
.............................................................AATGTAAACATCCTACACTCTCAGCT................................................................................................. 26 1 1 185.00 185 184 1 0
...............................................................TGTAAACATCATACACTCTCAGCT................................................................................................. 24 1 2 178.50 357 351 6 0
...............................................................TGTAAACATCCTACACTCTCAGAA................................................................................................. 24 2 2 150.50 301 300 0 1
...............................................................TGTAAACATCCTACACTCTCAGCTTTT.............................................................................................. 27 2 2 148.50 297 296 0 1
...............................................................TGTAAACATCCTATACTCTCAGCT................................................................................................. 24 1 2 146.50 293 290 3 0
...............................................................TGTAAACATCCTACACTCTCAGCTTAT.............................................................................................. 27 3 2 136.50 273 273 0 0
................................................................GTAAACATCCTACACTCTCAGCTA................................................................................................ 24 1 2 131.00 262 262 0 0
..............................................................ATGTAAACATCCTACACTCTCAGC.................................................................................................. 24 1 2 116.00 232 210 0 22
..............................................................ATGTAAACATCCTACACTCTCAGCTT................................................................................................ 26 2 2 110.00 220 218 0 2
...............................................................TGTAAACATCCTACACTCTCAGCTG................................................................................................ 25 0 2 102.50 205 205 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTATT.............................................................................................. 27 2 2 95.50 191 187 4 0
...............................................................TGTAAACATCTTACACTCTCAGCT................................................................................................. 24 1 2 90.50 181 179 1 1
..............................................................TTGTAAACATCCTACACTCTCAGC.................................................................................................. 24 1 2 89.00 178 178 0 0
...............................................................TGTAAACATCCTACACTCTCCGCT................................................................................................. 24 1 2 87.00 174 174 0 0
...............................................................TGTAAACATCCTACACTCTCATCT................................................................................................. 24 1 2 84.00 168 161 7 0
...............................................................TGTCAACATCCTACCCTCTCAGCT................................................................................................. 24 2 2 84.00 168 167 1 0
...............................................................TGTAAACATCCTACACTCTCAGCTTAA.............................................................................................. 27 3 2 82.50 165 159 6 0
................................................................GTAAACATCCTACACTCTCAGCTAT............................................................................................... 25 1 2 82.00 164 164 0 0
...............................................................TGTAAACATCCTACACTCT...................................................................................................... 19 0 2 79.50 159 157 0 2
...............................................................TGTAAACATCCTACACTCTCAGCTAAT.............................................................................................. 27 3 2 79.50 159 159 0 0
................................................................GTAAACATCCTACACTCTCAGCA................................................................................................. 23 1 2 76.50 153 153 0 0
...............................................................TGTAAACATCCCACACTCTCAGCT................................................................................................. 24 1 2 70.50 141 141 0 0
...............................................................TGTAAACATCCTACACTCTC..................................................................................................... 20 0 2 69.00 138 137 0 1
...............................................................TGTAAACATCGTACACTCTCAGCT................................................................................................. 24 1 2 68.50 137 136 0 1
...............................................................TGTAAACATCCTACACTCTCAGAT................................................................................................. 24 1 2 66.50 133 133 0 0
.......................................................................................................CTGGGAGAAGGCTGTTTACTCT........................................................... 22 0 1 66.00 66 62 0 4
..............................................................ATGTAAACATCCTACACTCTCAGCTA................................................................................................ 26 2 2 63.00 126 126 0 0
...............................................................TGTCAACATCCTACACTCTCAGC.................................................................................................. 23 1 2 60.50 121 121 0 0
...............................................................TGTCAACATCCTACACTCTCAGCTT................................................................................................ 25 2 2 60.50 121 121 0 0
...............................................................TGTAAACATCCAACACTCTCAGCT................................................................................................. 24 1 2 59.00 118 118 0 0
...............................................................TGTAAACATCCTACACTCTCAGTT................................................................................................. 24 1 2 58.50 117 117 0 0
...............................................................TGCAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 57.50 115 115 0 0
...............................................................TGTAAACATCCTACACTCTCAGCG................................................................................................. 24 1 2 56.50 113 111 1 1
...............................................................TGTAAACCTCCTACACTCTCAGCT................................................................................................. 24 1 2 56.00 112 112 0 0
...............................................................TGTAAACATCCTACACTCTCAA................................................................................................... 22 1 2 55.00 110 109 0 1
................................................................GTAAACATCCTACACTCTCAGCTTT............................................................................................... 25 1 2 55.00 110 110 0 0
...............................................................TGTAAACATCCTAGACTCTCAGCT................................................................................................. 24 1 2 55.00 110 109 1 0
...............................................................TGTAAACATCCTACACTCTCAGCTAG............................................................................................... 26 2 2 54.00 108 108 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTGA............................................................................................... 26 1 2 54.00 108 107 1 0
............................................................AAATGTAAACATCCTACACTCTCAGCT................................................................................................. 27 2 1 53.00 53 53 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTTAT............................................................................................. 28 3 2 52.50 105 105 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTAGA.............................................................................................. 27 3 2 50.50 101 101 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTGT............................................................................................... 26 0 2 49.50 99 99 0 0
...............................................................TGTAAACATCCTACCCTCTCAGCTT................................................................................................ 25 2 2 48.00 96 96 0 0
...........................................................AAAATGTAAACATCCTACACTCTCAGCT................................................................................................. 28 2 1 45.00 45 45 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTTA.............................................................................................. 27 2 2 44.50 89 89 0 0
...............................................................TGTAAACATCCTACCCTCTCAGC.................................................................................................. 23 1 2 43.00 86 85 1 0
...............................................................TGTAAACATCCTACACCCTCAGCT................................................................................................. 24 1 2 42.50 85 85 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTTTT............................................................................................. 28 3 2 41.50 83 83 0 0
...............................................................TGTAAACATCCTACACTCCCAGCT................................................................................................. 24 1 2 41.50 83 82 1 0
...............................................................TGCCAACATCCTACACTCTCAGCT................................................................................................. 24 2 2 40.00 80 80 0 0
...............................................................CGTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 39.50 79 79 0 0
...............................................................TGTAAACATCCTACACTCTCAGCC................................................................................................. 24 1 2 38.00 76 76 0 0
..............................................................ATGTAAACATCCTACACTCTCAG................................................................................................... 23 1 2 37.00 74 45 0 29
................................................................GTAAACATCCTACCCTCTCAGCT................................................................................................. 23 1 2 36.50 73 73 0 0
...............................................................TGTCAACATCCTACACTCTCAGCTA................................................................................................ 25 2 2 36.50 73 73 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTATA.............................................................................................. 27 2 2 36.50 73 73 0 0
...............................................................TGTACACATCCTACACTCTCAGCT................................................................................................. 24 1 2 35.50 71 71 0 0
...............................................................TGTAAACATCCTACACTCACAGCT................................................................................................. 24 1 2 35.50 71 71 0 0
...............................................................TGAAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 35.00 70 70 0 0
..............................................................ATGTAAACATCCTACACTCTCAGCTAT............................................................................................... 27 2 2 35.00 70 70 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTAC............................................................................................... 26 2 2 34.00 68 62 6 0
...............................................................TGTAAACATCCTACACTCTCAGAAA................................................................................................ 25 3 3 34.00 102 102 0 0
...............................................................TGTAAACATCCTACACTCTCAGCAG................................................................................................ 25 1 2 33.50 67 67 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTAAAA............................................................................................. 28 3 2 33.50 67 67 0 0
...............................................................TGTAAACATCCTACACTCTCAGTA................................................................................................. 24 2 2 33.50 67 67 0 0
...............................................................TGTCAACATCCTACACTCTCAGCTAT............................................................................................... 26 2 2 33.00 66 66 0 0
................................................................GTAAACATCCTACACTCTCAGAT................................................................................................. 23 1 2 32.50 65 62 3 0
...............................................................TGGAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 32.50 65 65 0 0
...............................................................TGTAAACATCCTACGCTCTCAGCT................................................................................................. 24 1 2 31.50 63 63 0 0
...............................................................TGTAAACATCCTACACTCTCAGCGA................................................................................................ 25 2 2 31.50 63 63 0 0
..............................................................ATGTAAACATCCTACACTCTCAGA.................................................................................................. 24 2 2 31.00 62 32 0 30
...............................................................TGTAAAAATCCTACACTCTCAGCT................................................................................................. 24 1 2 31.00 62 62 0 0
...............................................................TGTAAACATCCTACACACTCAGCT................................................................................................. 24 1 2 31.00 62 62 0 0
...............................................................TGTAAACATCCTACACTCTCAGGT................................................................................................. 24 1 2 30.50 61 61 0 0
...............................................................TGTAAACACCCTACACTCTCAGCT................................................................................................. 24 1 2 30.50 61 60 1 0
..................................................................AAACATCCTACACTCTCAGCT................................................................................................. 21 0 2 30.00 60 59 0 1
......................................................................ATCCTACACTCTCAGCT................................................................................................. 17 0 2 28.50 57 45 0 12
...............................................................TGTAAACATCCTAAACTCTCAGCTT................................................................................................ 25 2 2 28.50 57 56 1 0
................................................................GTAAACATCCTACACTCTCAGCTAA............................................................................................... 25 2 3 28.00 84 84 0 0
...............................................................TGTAAACATCCTACCCTCTCAGCTA................................................................................................ 25 2 2 28.00 56 56 0 0
.................................................................TAAACATCCTACACTCTCAGCT................................................................................................. 22 0 2 28.00 56 56 0 0
...............................................................CGTCAACATCCTACACTCTCAGCT................................................................................................. 24 2 2 28.00 56 56 0 0
....................................................................ACATCCTACACTCTCAGCT................................................................................................. 19 0 2 27.00 54 53 0 1
...............................................................TGTAAACATCCTACACTCTCAGCTATTT............................................................................................. 28 3 2 26.50 53 53 0 0
..............................................................ATGTAAACATCCTACACTCTCA.................................................................................................... 22 1 2 26.50 53 29 0 24
...............................................................TGACAACATCCTACACTCTCAGCT................................................................................................. 24 2 2 26.50 53 53 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTATAT............................................................................................. 28 3 2 26.50 53 53 0 0
.....................................................................CATCCTACACTCTCAGCT................................................................................................. 18 0 2 26.50 53 48 1 4
................................................................GTAAACATCCTACACTCTCAG................................................................................................... 21 0 3 25.67 77 76 0 1
...............................................................TGTAAACATACTACACTCTCAGCT................................................................................................. 24 1 2 25.50 51 50 1 0
...............................................................TGTAAACATCCTAAACTCTCAGC.................................................................................................. 23 1 2 25.00 50 49 0 1
...............................................................TGTAAACATCCTACACTCTCAGCAAA............................................................................................... 26 3 2 24.50 49 49 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTTAA............................................................................................. 28 2 2 24.50 49 49 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTAAGA............................................................................................. 28 2 2 24.50 49 49 0 0
...................................................................AACATCCTACACTCTCAGCT................................................................................................. 20 0 2 24.00 48 48 0 0
...............................................................TGTAAACATCCTCCACTCTCAGCT................................................................................................. 24 1 2 24.00 48 48 0 0
...............................................................TGTAACCATCCTACACTCTCAGCT................................................................................................. 24 1 2 24.00 48 48 0 0
...............................................................TGTAAACATCCTACTCTCTCAGCT................................................................................................. 24 1 2 24.00 48 47 1 0
................................................................GTAAACATCCTACACTCTCAGCAA................................................................................................ 24 2 2 23.50 47 47 0 0
...............................................................TGTAAACATCCTACCCTCTCAGCTAT............................................................................................... 26 2 2 23.50 47 47 0 0
...............................................................TGTCAACATCCTACACTCTCAGCA................................................................................................. 24 2 2 23.00 46 46 0 0
...............................................................TGTTAACATCCTACCCTCTCAGCT................................................................................................. 24 2 2 23.00 46 46 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTATAA............................................................................................. 28 2 2 23.00 46 46 0 0
...............................................................TGTAAACATCCTACACTTTCAGCT................................................................................................. 24 1 2 22.50 45 45 0 0
...............................................................GGTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 22.50 45 44 0 1
...............................................................TGTAAACAACCTACACTCTCAGCT................................................................................................. 24 1 2 22.50 45 44 1 0
.............................................................AATGTAAACATCCTACACTCTCAGC.................................................................................................. 25 1 1 22.00 22 22 0 0
...............................................................TGTCAACATCCTACACACTCAGCT................................................................................................. 24 2 2 21.50 43 43 0 0
...............................................................AGTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 21.50 43 42 0 1
...............................................................TGTAAACATCCTACACTCTCAGCAAT............................................................................................... 26 2 2 21.00 42 42 0 0
...............................................................AGTCAACATCCTACACTCTCAGCT................................................................................................. 24 2 2 21.00 42 42 0 0
...............................................................TGTAAACATCCTACACTCTCAAA.................................................................................................. 23 2 3 20.67 62 61 0 1
...............................................................TGTAAATATCCTACACTCTCAGCT................................................................................................. 24 1 2 20.50 41 41 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTAGT.............................................................................................. 27 3 2 20.00 40 40 0 0
...............................................................TATAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 19.50 39 39 0 0
...............................................................TGTGAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 19.50 39 39 0 0
................................................................GTACACATCCTACACTCTCAGCT................................................................................................. 23 1 2 19.00 38 38 0 0
.............................................................AATGTAAACATCCTACACTCTCAGCTT................................................................................................ 27 2 1 19.00 19 19 0 0
...............................................................TGTAAACATCCTACACTCTCAAC.................................................................................................. 23 1 2 19.00 38 38 0 0
...............................................................TGTAAACATCCTACACTCTTAGCT................................................................................................. 24 1 2 19.00 38 38 0 0
..............................................................ATGTAAACATCCTACACTCTCAGCTTT............................................................................................... 27 2 2 19.00 38 38 0 0
...............................................................TGTAAACATCCTACACTCTCAGCATT............................................................................................... 26 2 2 18.50 37 37 0 0
..............................................................ATGTAAACATCCTACACTCTCAGCTAA............................................................................................... 27 3 2 18.50 37 37 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTC............................................................................................... 26 2 2 18.00 36 36 0 0
...............................................................TGTAAACATCCTACACTCTCAT................................................................................................... 22 1 2 18.00 36 36 0 0
...............................................................TGTAGACATCCTACACTCTCAGCT................................................................................................. 24 1 2 17.50 35 35 0 0
...............................................................TGTAAACATCCTAAACTCTCAGCTA................................................................................................ 25 2 2 17.50 35 35 0 0
...............................................................TCTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 17.00 34 34 0 0
...............................................................TGTAAACATCCTACACTATCAGCT................................................................................................. 24 1 2 17.00 34 34 0 0
...............................................................TGTAAACATCCTACACTCTCAAT.................................................................................................. 23 2 2 17.00 34 34 0 0
...............................................................TGTGAACATCCTACCCTCTCAGCT................................................................................................. 24 2 2 16.50 33 33 0 0
..............................................................ATGTAAACATCCTACACTCTCAGCA................................................................................................. 25 2 2 16.50 33 33 0 0
..............................................................ATGTAAACATCCTCCACTCTCAGCT................................................................................................. 25 2 2 16.50 33 33 0 0
...............................................................TGTAAACATCCTACACTCTCAACTT................................................................................................ 25 2 2 16.00 32 32 0 0
................................................................GTAAACATCCTACACTCTCAGA.................................................................................................. 22 1 3 16.00 48 48 0 0
...............................................................TGTAAACATCCTACACTCTAAGCT................................................................................................. 24 1 2 16.00 32 31 1 0
...............................................................TGTAAACATCCTATACTCTCAGCTT................................................................................................ 25 2 2 16.00 32 32 0 0
...............................................................TGTAAACATTCTACACTCTCAGCT................................................................................................. 24 1 2 16.00 32 32 0 0
...............................................................TGTAAACATCCTACACTCTCACCTT................................................................................................ 25 2 2 16.00 32 32 0 0
...............................................................TGTAAACATCCTACAATCTCAGCT................................................................................................. 24 1 2 16.00 32 32 0 0
...............................................................TGTAAACATCCTACACTCTCACC.................................................................................................. 23 1 2 15.50 31 31 0 0
...............................................................TGTAAACATCCTACACTCTCGGCT................................................................................................. 24 1 2 15.50 31 31 0 0
...............................................................TGTAAACATCCTGCACTCTCAGCT................................................................................................. 24 1 2 15.50 31 31 0 0
.......................................................................................................CTGGGAGAAGGCTGTTTACTCTT.......................................................... 23 1 1 15.00 15 13 0 2
...............................................................TGTAAACATCCTACACTCTCAGAAT................................................................................................ 25 3 3 15.00 45 45 0 0
...............................................................TGTCAACATCCTAAACTCTCAGCT................................................................................................. 24 2 2 14.50 29 29 0 0
...............................................................TGTAAACGTCCTACACTCTCAGCT................................................................................................. 24 1 2 14.00 28 28 0 0
...............................................................TGTAAACATCCTACATTCTCAGCT................................................................................................. 24 1 2 14.00 28 28 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTC................................................................................................ 25 1 2 14.00 28 28 0 0
..........................................................CAAAATGTAAACATCCTACACTCTCAGCT................................................................................................. 29 3 1 14.00 14 14 0 0
...............................................................TGTAAACATCCTATACTCTCAGC.................................................................................................. 23 1 2 13.50 27 26 1 0
.............................................................AATGTAAACATCCTACACTCTCAGCTA................................................................................................ 27 2 1 13.00 13 13 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTAAG.............................................................................................. 27 2 2 12.50 25 25 0 0
...............................................................TGTAAACATCCTAAACTCTCAGCTAT............................................................................................... 26 2 2 12.50 25 25 0 0
...............................................................TTTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 2 12.00 24 24 0 0
...............................................................TGTAAACATCCTACCCTCTCAGCA................................................................................................. 24 2 2 12.00 24 24 0 0
...............................................................TGTAAACATCCTACACTCTCAGCGT................................................................................................ 25 2 2 12.00 24 24 0 0
...............................................................TGTAAACATCTTACACTCTCAGC.................................................................................................. 23 1 2 12.00 24 22 2 0
..............................................................CTGTAAACATCCTACACTCTCAG................................................................................................... 23 0 1 12.00 12 12 0 0
................................................................GTAAACATCCTCCACTCTCAGCT................................................................................................. 23 1 2 12.00 24 24 0 0
................................................................GTAAACATCCTACACTCTCA.................................................................................................... 20 0 3 12.00 36 34 0 2
...............................................................TGTAAACATCCTACACTCTCAGCTAAGT............................................................................................. 28 3 2 12.00 24 24 0 0
...............................................................TGTAAACTTCCTACACTCTCAGCT................................................................................................. 24 1 2 11.50 23 23 0 0
...............................................................TGTCAACATCCTACACTCTCAGCTTT............................................................................................... 26 2 2 11.00 22 22 0 0
................................................................GTAAACATCCTACACTCTCAGCAT................................................................................................ 24 2 2 11.00 22 22 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTAAA............................................................................................. 28 3 2 11.00 22 22 0 0
.............................................................CTTGTAAACATCCTACACTCTCAG................................................................................................... 24 2 2 11.00 22 22 0 0
..............................................................ATGTAAACATCCTACACTCTCCGCT................................................................................................. 25 2 2 11.00 22 22 0 0
..............................................................ATGTAAACATCATACACTCTCAGCT................................................................................................. 25 2 2 11.00 22 22 0 0
...............................................................TGTAAACATCCTACACTCTCACCTA................................................................................................ 25 2 2 11.00 22 22 0 0
..............................................................TTGTAAACATCCTACACTCTCAGCT................................................................................................. 25 1 2 10.50 21 21 0 0
...............................................................TGTAAACATCCTACACTCTCAGTAA................................................................................................ 25 3 4 10.50 42 42 0 0
...............................................................TGTCAACATCCTACACTCTCAGA.................................................................................................. 23 2 2 10.50 21 21 0 0
...............................................................TGTCAACAACCTACACTCTCAGCT................................................................................................. 24 2 2 10.50 21 20 1 0
................................................................GTAAACATCCTACACTCTCAGCTTTT.............................................................................................. 26 2 2 10.00 20 20 0 0
...............................................................TGTCAACATCCTACACTCTCAGCTAA............................................................................................... 26 3 3 9.67 29 29 0 0
...............................................................TGTAAACATCATACACTCTCAGCTAT............................................................................................... 26 2 2 9.50 19 19 0 0
...............................................................TGTAAACATCCTACCCTCTCAG................................................................................................... 22 1 2 9.50 19 16 3 0
...............................................................TGTAAACATCGTACACTCTCAGCTT................................................................................................ 25 2 2 9.50 19 19 0 0
...............................................................TGTAAGCATCCTACACTCTCAGCT................................................................................................. 24 1 2 9.00 18 18 0 0
...............................................................TGTAAACATCCTACCCTCTCAGCTTT............................................................................................... 26 2 2 9.00 18 16 2 0
...............................................................TGTAAACATCCTACACTCTCACCTAT............................................................................................... 26 2 2 9.00 18 18 0 0
............................................................AAATGTAAACATCCTACACTCTCAGCTT................................................................................................ 28 3 1 9.00 9 9 0 0
.............................................................AATGTAAACATCCTACACTCTCAGCTAT............................................................................................... 28 2 1 9.00 9 9 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTTTAT............................................................................................ 29 3 2 9.00 18 18 0 0
...............................................................TGTAAACATCATACACTCTCAGC.................................................................................................. 23 1 2 9.00 18 18 0 0
...............................................................TGTAAACATCCTACACTCTCATCTA................................................................................................ 25 2 2 9.00 18 18 0 0
...............................................................TGTAAACATCCAACACTCTCAGCTT................................................................................................ 25 2 2 9.00 18 18 0 0
...............................................................TGTCAACATCCTACACCCTCAGCT................................................................................................. 24 2 2 9.00 18 18 0 0
...............................................................TGTAAACATCCTAAACTCTCAGCTTT............................................................................................... 26 2 2 8.50 17 16 1 0
...............................................................TGTAAACATCCTACACTCTCAACTAT............................................................................................... 26 2 2 8.50 17 16 1 0
...............................................................TGTATACATCCTACACTCTCAGCT................................................................................................. 24 1 2 8.50 17 17 0 0
...............................................................TGTAAACATCATACACTCTCAGCTT................................................................................................ 25 2 4 8.50 34 34 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTGAA.............................................................................................. 27 2 2 8.50 17 17 0 0
...............................................................TGTAAACATCCTACCCTCTCA.................................................................................................... 21 1 2 8.00 16 15 0 1
................................................................GTAAACATCCTACACTCTCAGT.................................................................................................. 22 1 4 8.00 32 32 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTGA.............................................................................................. 27 3 2 8.00 16 16 0 0
.......................................................................................................CTGGGAGAAGGCTGTTTACTCTA.......................................................... 23 1 1 8.00 8 8 0 0
...............................................................TGTAAACATCCTACACTCTCAGCCA................................................................................................ 25 2 2 8.00 16 16 0 0
.....................................................................CATCCTACACTCTCAGCTGTAAA............................................................................................ 23 1 1 8.00 8 8 0 0
...............................................................TGTAAACATCCTACACTCTCCGCTT................................................................................................ 25 2 2 8.00 16 16 0 0
...............................................................TGTAAACAGCCTACACTCTCAGCT................................................................................................. 24 1 2 8.00 16 16 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTACA.............................................................................................. 27 3 2 8.00 16 16 0 0
...............................................................TGGCAACATCCTACACTCTCAGCT................................................................................................. 24 2 2 8.00 16 15 1 0
...............................................................TGTAAACATCCTACACTCTCAACTA................................................................................................ 25 2 2 8.00 16 15 1 0
...............................................................TGTAAACATCATACACTCTCAGCTA................................................................................................ 25 2 2 8.00 16 16 0 0
..............................................................ATGTAAACATCCTACACTCTCAGCAA................................................................................................ 26 3 2 8.00 16 16 0 0
.......................................................................................................CTGGGAGAAGGCTGTTTACTC............................................................ 21 0 1 8.00 8 5 0 3
...............................................................TGTAAACATCCAACCCTCTCAGCT................................................................................................. 24 2 2 7.50 15 15 0 0
...............................................................TGTCAACATCCTACCCTCTCAGC.................................................................................................. 23 2 2 7.50 15 14 1 0
...............................................................TGTAAACATCCTACACTCTCAGCAC................................................................................................ 25 2 2 7.50 15 15 0 0
...............................................................TGTAAACATCCTACACTCTCAGCAGA............................................................................................... 26 2 2 7.50 15 15 0 0
................................................................GTAAACATCCTACACTCTCAGCTTAA.............................................................................................. 26 3 2 7.50 15 15 0 0
...............................................................TGTCAACATCCTACACTCTCA.................................................................................................... 21 1 2 7.50 15 15 0 0
................................................................GTAAACATCCTACACTCTCAGTT................................................................................................. 23 1 3 7.33 22 22 0 0
...............................................................TGTAAACATCCTACACTCTCAGTAT................................................................................................ 25 3 3 7.33 22 22 0 0
..............................................................CTGTAAACATCCTACACTCTCAGCT................................................................................................. 25 0 1 7.00 7 6 0 1
................................................................GTAAACATCCTACACTCTCAGCTG................................................................................................ 24 0 2 7.00 14 14 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTCT............................................................................................... 26 1 2 7.00 14 14 0 0
...............................................................TGTAAACATCCTTCACTCTCAGCT................................................................................................. 24 1 2 7.00 14 14 0 0
...............................................................TGTCAACATCCTACACTCTCAGCAA................................................................................................ 25 3 2 7.00 14 14 0 0
...............................................................TGTAAACCTCCTACACTCTCAGC.................................................................................................. 23 1 2 7.00 14 14 0 0
...............................................................TGTAAACATCCTACACTCTCCGC.................................................................................................. 23 1 2 7.00 14 14 0 0
...............................................................TGTAAAAATCCTACACTCTCAGCTT................................................................................................ 25 2 2 7.00 14 13 1 0
................................................................GTAAACATCCTACTCTCTCAGCT................................................................................................. 23 1 2 7.00 14 14 0 0
...............................................................TGTAAACATCCCACACTCTCAGCTA................................................................................................ 25 2 2 7.00 14 14 0 0
...............................................................TGTAAACATCCTATACTCTCAGCTA................................................................................................ 25 2 2 7.00 14 14 0 0
.............................................................AATGTAAACATCCTACACTCTCAGCTAA............................................................................................... 28 3 1 7.00 7 7 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTTAAT............................................................................................ 29 3 2 7.00 14 14 0 0
...............................................................TGTAAACATCCTAAACTCTCAGCTAA............................................................................................... 26 3 2 7.00 14 14 0 0
................................................................GTAAACATCCTACACTCTCAGCTTAT.............................................................................................. 26 3 2 7.00 14 14 0 0
...............................................................TGTAAACATCCTACACTCTCCGCTA................................................................................................ 25 2 2 7.00 14 14 0 0
...............................................................TGTAAACATCCTAAACTCTCAACT................................................................................................. 24 2 2 7.00 14 14 0 0
...............................................................TGTAAACATCCTACACTCTCAGTTT................................................................................................ 25 2 2 6.50 13 13 0 0
...............................................................TGTCAACATCCTACACTCTCAG................................................................................................... 22 1 2 6.50 13 13 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTGT.............................................................................................. 27 3 2 6.50 13 13 0 0
...............................................................TGTAAACATCCTACACTCTCAGATT................................................................................................ 25 2 2 6.50 13 13 0 0
...............................................................TGTAAACATCCTACACTCTCATCTT................................................................................................ 25 2 2 6.50 13 13 0 0
...............................................................TGTAAACATCTTACACTCTCAGCTT................................................................................................ 25 2 2 6.50 13 13 0 0
...............................................................TGTAAACCTCCTACACTCTCAGCTT................................................................................................ 25 2 2 6.50 13 13 0 0
...............................................................TGTAAACATCCTACACTCTCAGATA................................................................................................ 25 2 2 6.50 13 13 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTCT.............................................................................................. 27 3 2 6.00 12 12 0 0
...............................................................TGTAAACATCCTACCCTCTCAGCAA................................................................................................ 25 3 2 6.00 12 12 0 0
...............................................................TGTAAACATCCCACACTCTCAGCTT................................................................................................ 25 2 2 6.00 12 12 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTAG.............................................................................................. 27 2 2 6.00 12 12 0 0
...............................................................TGTAAACATCCTACACTCTCACCTTT............................................................................................... 26 2 2 6.00 12 11 1 0
..............................................................ATGTAAACATCCTACACTCTCAGT.................................................................................................. 24 2 2 6.00 12 8 0 4
...............................................................TGTAAACATCCTACACTCTCAGCCT................................................................................................ 25 2 2 6.00 12 12 0 0
..............................................................ATGTAAACATCCTACACTCTCGGCT................................................................................................. 25 2 2 6.00 12 12 0 0
...............................................................TGTCAACATCCCACACTCTCAGCT................................................................................................. 24 2 2 6.00 12 12 0 0
................................................................GTAAACATCCTACACTCTCAGCG................................................................................................. 23 1 2 6.00 12 12 0 0
...............................................................TGTAAACATCCTACACTCTCAGCTTG............................................................................................... 26 2 2 6.00 12 11 0 1
......................................................................ATCCTACACTCTCAGCTTTGTAAAC......................................................................................... 25 3 1 6.00 6 6 0 0
...............................................................TGTAAACATCCAACACTCTCAGC.................................................................................................. 23 1 2 6.00 12 12 0 0
............................................................AAATGTAAACATCCTACACTCTCAGC.................................................................................................. 26 2 1 6.00 6 6 0 0
...............................................................TGTAAACATCCTAAACTCTCAGCA................................................................................................. 24 2 2 5.50 11 11 0 0
..............................................................ATGTAAACATCCTACACTCTCAGTA................................................................................................. 25 3 2 5.50 11 11 0 0
................................................................GTAAACATCCTACACTCTCAGCTTTA.............................................................................................. 26 2 2 5.50 11 11 0 0
...............................................................TGTAAACATCCTACACTCTCATC.................................................................................................. 23 1 2 5.50 11 11 0 0
..............................................................ATGTAAACATCCTACACTCTCAGCAT................................................................................................ 26 3 2 5.50 11 11 0 0
...............................................................TGTAAACATCCCACACTCTCAGAT................................................................................................. 24 2 2 5.50 11 11 0 0
...............................................................TGTAAACATCCCACACTCTCAGTT................................................................................................. 24 2 2 5.50 11 11 0 0
...............................................................TGTAAACATCCTACACCCTCCGCT................................................................................................. 24 2 2 5.50 11 11 0 0
...............................................................TGTAAACATCCAACACTCTCAGCTAT............................................................................................... 26 2 2 5.50 11 11 0 0
...............................................................TGTAAACATCCTACACTCTCAGCATTT.............................................................................................. 27 3 2 5.50 11 11 0 0
...............................................................TGTAAACATCCTACACTCTCAACA................................................................................................. 24 2 2 5.50 11 11 0 0
...............................................................TGTAAACATCCTACCCTCTCAGCTAA............................................................................................... 26 3 2 5.50 11 11 0 0
................................................................GTAAACATCCTACACTCTCAGCTTA............................................................................................... 25 2 2 5.50 11 11 0 0
...............................................................TGTAAACATCCCACACTCTCAGC.................................................................................................. 23 1 2 5.50 11 11 0 0
...............................................................TGTAAACATCCTACACTCTCT.................................................................................................... 21 1 2 5.50 11 11 0 0
...............................................................TGTAAACAACCTACCCTCTCAGCT................................................................................................. 24 2 2 5.50 11 11 0 0
................................................................GTAAACATCCTACACTCTCAGCTAAA.............................................................................................. 26 3 3 5.33 16 16 0 0
...............................................................TGTAAACATCCTACCCTCTCAGA.................................................................................................. 23 2 3 5.33 16 16 0 0
...............................................................TGTAAACATCCTATACTCTCAGCTAT............................................................................................... 26 2 2 5.00 10 10 0 0
...........................................................ACCCTGTAAACATCCTACACTCTCAGCT................................................................................................. 28 2 1 5.00 5 5 0 0

Anti-sense strand reads

CAACAGGACTCCGAACACGACGAGTGGCGGTTGGACGACATCTCTCGTGACTCACTGTCTATGACATTTGTAGGATGTGAGAGTCGACACTTTTCATTCTTTCGACCCTCTTCCGACAAATGAGAGAGACGGAACCTTTAGTTGATTCTCTTTACTAAAAATTTACCGGACACAGAACATCAAC
********************************************(((((...((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))).)))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:51 PM