ID:

rno-mir-3084c

 Coordinate:

chr5:86767029-86767097 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.1 -23.1 -22.7
mature
  1. chr1:282154286-282154308 -
  2. chr19:12674517-12674539 +
  3. chr5:86767036-86767058 +
  4. chr6:91633083-91633105 -
  5. chr6:91645183-91645205 -
star

Sense Strand Reads

AGATGGAGAAAAGGAGAAAAAAAGAAAATATCATCCCCTTATGTGCTATACAAATAGTTGAAGGTTAATTAGCAGAGTAACTGCATATAGTAATTCTGCCAGTTCCCTTCAGACAAAAAAAAAGTAAAATGGACATACTTGTATTAGGTAAGTAGCAGGCCTTTATCTA
***********************************.((.....((((..........(((((((..((((.(((((((.((((....)))).))))))).)))).)))))))..........))))....))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.........................................................TTGAAGGTTAATTAGCAGAGTAA......................................................................................... 23 0 5 2.20 11 11 0
.........................................................TTGAAGGTTAATTAGCAGAGTAT......................................................................................... 23 1 5 0.60 3 3 0
.........................................................TTGAAGGTTAATTAGCAGAGTAAT........................................................................................ 24 1 5 0.60 3 3 0
..........................................................TGAAGGTTAATTAGCAGAGTAA......................................................................................... 22 0 5 0.40 2 2 0
.......................................................AGTTGAAGGTTAATTAGCAGAGTTT......................................................................................... 25 2 5 0.40 2 2 0
.........................................................TTGAAGGTTAATTAGCAGAGTAAA........................................................................................ 24 1 5 0.40 2 2 0
.........................................................TTGAAGGTTAATTAGCAGAGTAACTGC..................................................................................... 27 0 4 0.25 1 1 0
.......................................................AGTTGAAGGTTAATTAGCAGAGT........................................................................................... 23 0 5 0.20 1 1 0
.........................................................TTGAAGGTTAATTAGCAGAGTTAT........................................................................................ 24 2 5 0.20 1 1 0
........................................................GTTGAAGGTTAATTAGCAGAGT........................................................................................... 22 0 5 0.20 1 1 0
.........................................................TTGAAGGTTAATTAGCAGAGT........................................................................................... 21 0 5 0.20 1 1 0
........................................................GTTGAAGGTTAACTAGCAGAGT........................................................................................... 22 1 5 0.20 1 1 0
........................................................GTTGAAGGTTAATTAGCAGAGTAA......................................................................................... 24 0 5 0.20 1 1 0
........................................................GTTGAAGGTTAATTAGCAGAGAAA......................................................................................... 24 1 5 0.20 1 1 0
...................................................................ATTAGCAGAGTAACTGCA.................................................................................... 18 0 10 0.10 1 0 1

Anti-sense strand reads

TCTACCTCTTTTCCTCTTTTTTTCTTTTATAGTAGGGGAATACACGATATGTTTATCAACTTCCAATTAATCGTCTCATTGACGTATATCATTAAGACGGTCAAGGGAAGTCTGTTTTTTTTTCATTTTACCTGTATGAACATAATCCATTCATCGTCCGGAAATAGAT
***********************************.((.....((((..........(((((((..((((.(((((((.((((....)))).))))))).)))).)))))))..........))))....))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:45 PM