ID:

rno-mir-3084a

 Coordinate:

chr19:43403103-43403169 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.5 -21.8 -21.6
mature
  1. chr10:104084108-104084130 -
  2. chr18:34418292-34418314 +
  3. chr19:43403108-43403130 +
  4. chr5:65988735-65988757 +
  5. chr9:16513927-16513949 +
star
  1. chr1:282154253-282154273 -
  2. chr10:41049301-41049321 +
  3. chr10:104084075-104084095 -
  4. chr18:34418327-34418347 +
  5. chr19:43403143-43403163 +
  6. chr6:91633050-91633070 -
  7. chr6:91645150-91645170 -
  8. chr7:66663847-66663867 -
  9. chr9:16513962-16513982 +

Sense Strand Reads

CCTGCTTTCCTTTGACTGTGTGAGCAGTGTTAATTCTTATGTGCTATACTAATAGTTGAAGGTTCATTAGCAGAGTAACTGCATACAGTAATTCTGCCAGTCCCCTTCAGACAAAAATAAAAAAAAAATAATAAAAAAAATAAAAATTTAAAAAAACTAGTTTTGGG
****************************************.((............(((((((.......(((((((.((((....)))).)))))))......))))))).......)).......***************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
.......................................................TTGAAGGTTCATTAGCAGAGTAA......................................................................................... 23 0 5 2.20 11 11 0 0
......................................................GTTGAAGGTTCATTAGCAGAGT........................................................................................... 22 0 5 1.20 6 5 1 0
..............................................TACTAATAGTTGAAGGTTCG..................................................................................................... 20 1 5 0.80 4 0 0 4
........................................................TGAAGGTTCATTAGCAGAGTAT......................................................................................... 22 1 5 0.60 3 3 0 0
..........................................................................................ATTCTGCCAGTCCCCTTCAGA........................................................ 21 0 9 0.56 5 4 1 0
..............................................TACTAATAGTTGAAGGTTCATTAGCAGA............................................................................................. 28 0 5 0.40 2 2 0 0
.....................................................AGTTGAAGGTTCATTAGCAGAGT........................................................................................... 23 0 5 0.40 2 2 0 0
......................................................GTTGAAGGTTCATTAGCAGAGTATT........................................................................................ 25 2 5 0.40 2 2 0 0
......................................ATGTGCTATACTAATAGTTGAAGGTTCAT.................................................................................................... 29 0 5 0.40 2 2 0 0
...........................................................................................TTCTGCCAGTCCCCTTCAGACA...................................................... 22 0 9 0.22 2 2 0 0
............................................................................................ACTGCCAGTCCCCTTCAGACAAAA................................................... 24 1 9 0.22 2 0 2 0
......................................................................................GGGGATTCTGCCAGTCCCCTTCAGA........................................................ 25 3 9 0.22 2 2 0 0
......................................................GTTGAAGGTTCATTAGCAGAGTA.......................................................................................... 23 0 5 0.20 1 1 0 0
.......................................................TTGAAGGTTCATTAGCAGACTAA......................................................................................... 23 1 5 0.20 1 1 0 0
..........................................................................................ATTCTGCCAGTCCCCTTCAGAAGA..................................................... 24 2 10 0.20 2 2 0 0
....................................TTATGTGCTATACTAATAGTTGAAGGTTC...................................................................................................... 29 0 5 0.20 1 0 1 0
.........................................TGCTATACTAATAGTTGAAGGTTCAT.................................................................................................... 26 0 5 0.20 1 1 0 0
...........................................................................................TTCTGCCAGTCCCCTTCAGAA....................................................... 21 1 10 0.20 2 2 0 0
......................................................GTTGAAGGTTCATTAGCAGAGTAG......................................................................................... 24 1 5 0.20 1 1 0 0
......................................................GTTGAAGGTTCATTAGCAGAG............................................................................................ 21 0 5 0.20 1 1 0 0
........................................................TGAAGGTTCATTAGCAGAGTAA......................................................................................... 22 0 5 0.20 1 1 0 0
.......................................................TTGAAGGTTCATTAGCAGAGTAG......................................................................................... 23 1 5 0.20 1 1 0 0
......................................................GTTGAAGGTTCATTAGCAGAGTAA......................................................................................... 24 0 5 0.20 1 1 0 0
.......................................................TTGAAGGTTCATTAGCAGCGTGA......................................................................................... 23 2 5 0.20 1 1 0 0
...........................................................................................ATCTGCCAGTCCCCTTCAGACAAAA................................................... 25 1 9 0.11 1 0 1 0
.............................................................................................ATGCCAGTCCCCTTCAGACAAAA................................................... 23 1 9 0.11 1 0 1 0
..........................................................................................ATTCTGCCAGTCCCCTTCAGAAT...................................................... 23 2 9 0.11 1 1 0 0
............................................................................................TCTGCCAGTCCCCTTCAGACTAGT................................................... 24 3 9 0.11 1 1 0 0
...........................................................................................ATCTGCCAGTCCCCTTCAGAC....................................................... 21 1 9 0.11 1 0 1 0
.............................................................................................CTGCCAGTCCCCTTCAGACAAA.................................................... 22 0 9 0.11 1 0 1 0
.................................................................ATTAGCAGAGTAACTGCA.................................................................................... 18 0 10 0.10 1 0 1 0

Anti-sense strand reads

GGACGAAAGGAAACTGACACACTCGTCACAATTAAGAATACACGATATGATTATCAACTTCCAAGTAATCGTCTCATTGACGTATGTCATTAAGACGGTCAGGGGAAGTCTGTTTTTATTTTTTTTTTATTATTTTTTTTATTTTTAAATTTTTTTGATCAAAACCC
*****************************************.((............(((((((.......(((((((.((((....)))).)))))))......))))))).......)).......**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:40 PM