ID:

rno-mir-3072

 Coordinate:

chr6:133898795-133898905 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.8 -56.6 -56.5 -56.4

Sense Strand Reads

TATCCGTGCGACGTGGAGGGCAGCTAGCAGATCACAGAATAGCAGCCTCCCCAAGAAGGTGGCAGGGCTGTGAGTGTGAGGGACCCCGAGGGAGGGCAGGCTGCCCCAGGCCCTGCCCCCTCCAGGAAGCCTTCTTGCTCCAGCCCCACACACGATCTCAATCTCCCTTGTCCTCCTCTGATGTTCACCGTGTGATCTTTTATCAACGCAA
***********************************......................((.(((.((((((.((((..(((((...((..(((.(((((((..(((...)))))))))).)))..))...)))))..)))))))))).......................)))..))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
.................................................................................................................TGCCCCCTCCAGGAAGCCTTCT............................................................................ 22 0 1 16.00 16 16
.................................................................................................................TGCCCCCTCCAGGAAGCCTTCTAT.......................................................................... 24 2 2 4.00 8 8
.................................................................................................................TGCCCCCTCCAGGAAGCCTTC............................................................................. 21 0 1 3.00 3 3
.................................................................................................................TGCCCCCTCCAGGAAGCCTTCTTT.......................................................................... 24 1 1 3.00 3 3
.................................................................................................................TGCCCCCTCCAGGAAGCCTTCTTAT......................................................................... 25 2 1 2.00 2 2
.................................................................................................................TGCCCCCTCCAGGAAGCCTTCTT........................................................................... 23 0 1 2.00 2 2
.................................................................................................................TGCCCCCTCCAGGAAGCCTTCTTTAT........................................................................ 26 2 1 2.00 2 2
.................................................................................................................TGCCCCCTCCAGGAAGCCTTCTTTT......................................................................... 25 2 1 2.00 2 2
.................................................................................................................TGCCCCCTCCAGGAAGCCTTAA............................................................................ 22 2 1 1.00 1 1
...............................................................................GGGACCCCGAGGGAGGGCAGT............................................................................................................... 21 1 1 1.00 1 1
.................................................................................................................TGCCCCCTCCAGGACGCCTTCT............................................................................ 22 1 1 1.00 1 1
..................................................................................................................GCCCCCTCCAGGAAGCCTTCT............................................................................ 21 0 2 0.50 1 1
.................................................................................................................TGCCCCCTCCAGGAAGCCTTCTGAAT........................................................................ 26 3 2 0.50 1 1

Anti-sense strand reads

ATAGGCACGCTGCACCTCCCGTCGATCGTCTAGTGTCTTATCGTCGGAGGGGTTCTTCCACCGTCCCGACACTCACACTCCCTGGGGCTCCCTCCCGTCCGACGGGGTCCGGGACGGGGGAGGTCCTTCGGAAGAACGAGGTCGGGGTGTGTGCTAGAGTTAGAGGGAACAGGAGGAGACTACAAGTGGCACACTAGAAAATAGTTGCGTT
***********************************......................((.(((.((((((.((((..(((((...((..(((.(((((((..(((...)))))))))).)))..))...)))))..)))))))))).......................)))..))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:49 PM