ID:

rno-mir-299b

Coordinate:

chr6:133859295-133859412 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. chr6:133859331-133859348 -
  2. chr6:133859362-133859379 +
star

Sense Strand Reads

CAAGCCACAAGAGCATCTCTTCTCTCACTTCAGGCTTGTCCAGGATGGTACGGACTGGATGGCTGGGCTGGATACCAAGAAGCGGTTTACCGTCCCACATACATACTCAAAATGTATGTGGGACGGTAAACCATTTCTTCAAGTACCGCGTGACAGCAGGGACAGCTGTAAGAAGGCTCATGTCTGCCAGGTGGCCTCAGGACACCTCTTCAGGGACA
********************************************************************.((.(((.((((((.(((((((((((((((((((((.......))))))))))))))))))))).))))))...)))))***********************************************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
..................................................................................TGGTTTACCGTCCCACATACATA................................................................................................................. 23 1 2 2.50 5 5
..................................................................................TGGTTTACCGTCCCACATACATAA................................................................................................................ 24 2 2 2.50 5 5
..................................................................................TGGTTTACCGTCCCACATACATAG................................................................................................................ 24 2 2 2.00 4 4
..................................................................................................................TATGTGGGACGGTAAACC...................................................................................... 18 0 2 1.00 2 2
..................................................................................TGGTTTACCGTCCCACATACAAA................................................................................................................. 23 2 3 1.00 3 3
..................................................................................TGGTTTACCGTCCCACATACATAC................................................................................................................ 24 1 1 1.00 1 1
...................................................................................GGTTTACCGTCCCACATACATA................................................................................................................. 22 0 1 1.00 1 1
.................................................................................................................GTATGTGGGACGGTAAACCGTTAA................................................................................. 24 3 3 0.67 2 2
..................................................................................................................TATGTGGGACGGTAAACCAC.................................................................................... 20 1 2 0.50 1 1
..................................................................................TGGTTTACCGTCCCACATACAGA................................................................................................................. 23 2 2 0.50 1 1
..................................................................................TGGTTTACCGTCCCACATACAAAAT............................................................................................................... 25 3 3 0.33 1 1
..................................................................................TGGTTTACCGTCCCACATACGTAA................................................................................................................ 24 3 3 0.33 1 1
..................................................................................TGGTTTACCGTCCCACATAAAAA................................................................................................................. 23 3 7 0.14 1 1

Anti-sense strand reads

GTTCGGTGTTCTCGTAGAGAAGAGAGTGAAGTCCGAACAGGTCCTACCATGCCTGACCTACCGACCCGACCTATGGTTCTTCGCCAAATGGCAGGGTGTATGTATGAGTTTTACATACACCCTGCCATTTGGTAAAGAAGTTCATGGCGCACTGTCGTCCCTGTCGACATTCTTCCGAGTACAGACGGTCCACCGGAGTCCTGTGGAGAAGTCCCTGT
***********************************************************************.((.(((.((((((.(((((((((((((((((((((.......))))))))))))))))))))).))))))...)))))********************************************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528818
Adult_testes_Mili_IP
...............................................................................................................TACATACACCCTGCCATTTGGT..................................................................................... 22 0 1 70.00 70 65 5
..............................................................................ATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 23 1 1 58.00 58 58 0
.............................................................................AATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 2 1 56.00 56 56 0
...............................................................................TTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 22 0 1 38.00 38 35 3
..............................................................................TTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 23 1 1 36.00 36 36 0
.............................................................................TATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 1 1 33.00 33 33 0
................................................................................................................ACATACACCCTGCCATTTGGT..................................................................................... 21 0 1 20.00 20 20 0
............................................................................AAATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 3 1 18.00 18 18 0
..............................................................................TATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 23 2 1 16.00 16 16 0
..............................................................................AATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 23 2 1 16.00 16 16 0
.............................................................................AAATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 3 1 12.00 12 12 0
.............................................................................GATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 2 1 11.00 11 11 0
............................................................................TAATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 2 1 9.00 9 9 0
.............................................................................ATTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 2 1 9.00 9 9 0
.................................................................................................................CATACACCCTGCCATTTGGT..................................................................................... 20 0 1 7.00 7 7 0
.............................................................................TTTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 1 1 7.00 7 7 0
................................................................................................................ACATACACCCTGCCATTTGGTA.................................................................................... 22 0 1 6.00 6 6 0
................................................................................TCGCCAAATGGCAGGGTGTATG.................................................................................................................... 22 0 1 5.00 5 5 0
.................................................................................AGCCAAATGGCAGGGTGTATG.................................................................................................................... 21 1 1 5.00 5 5 0
............................................................................AGATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 3 1 5.00 5 5 0
.............................................................................................................TATACATACACCCTGCCATTTGGT..................................................................................... 24 1 1 5.00 5 5 0
..............................................................................................................TTACATACACCCTGCCATTTGGT..................................................................................... 23 0 1 4.00 4 3 1
............................................................................AAATTCGCCAAATGGCAGGGTGTA...................................................................................................................... 24 3 1 4.00 4 4 0
.................................................................................CGCCAAATGGCAGGGTGTATG.................................................................................................................... 21 0 1 4.00 4 4 0
..............................................................................ATTCGCCAAATGGCAGGGTGTA...................................................................................................................... 22 1 1 4.00 4 4 0
................................................................................TCGCCAAATGGCAGGGTGTAT..................................................................................................................... 21 0 1 4.00 4 4 0
..............................................................................TATCGCCAAATGGCAGGGTGTATG.................................................................................................................... 24 2 1 4.00 4 4 0
............................................................................TGATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 2 1 4.00 4 4 0
............................................................................ATATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 2 1 3.00 3 3 0
...........................................................................TATTTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 26 3 1 3.00 3 3 0
..............................................................................TTTCGCCAAATGGCAGGGTGTATA.................................................................................................................... 24 2 1 3.00 3 3 0
...............................................................................................................AACATACACCCTGCCATTTGGTA.................................................................................... 23 1 1 3.00 3 3 0
............................................................................TAAATCGCCAAATGGCAGGGTGTA...................................................................................................................... 24 3 1 3.00 3 3 0
...............................................................................ATCGCCAAATGGCAGGGTGTATG.................................................................................................................... 23 1 1 3.00 3 3 0
................................................................................ACGCCAAATGGCAGGGTGTATG.................................................................................................................... 22 1 1 3.00 3 3 0
...............................................................................................................TACATACCCCCTGCCATTTGGT..................................................................................... 22 1 1 3.00 3 2 1
..............................................................................AATCGCCAAATGGCAGGGTGTATG.................................................................................................................... 24 2 1 3.00 3 3 0
...............................................................................................................AACATACACCCTGCCATTTGGT..................................................................................... 22 1 1 3.00 3 3 0
.............................................................................TAATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 2 1 3.00 3 3 0
..............................................................................................................TAACATACACCCTGCCATTTGGT..................................................................................... 23 1 1 3.00 3 3 0
.............................................................................................................AATACATACACCCTGCCATTTGGT..................................................................................... 24 2 2 2.50 5 5 0
..............................................................................................................ATACATACACCCTGCCATTTGGT..................................................................................... 23 1 2 2.50 5 5 0
...........................................................................TCTATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 26 3 1 2.00 2 2 0
............................................................................AAGTTCGCCAAATGGCAGGGTGTA...................................................................................................................... 24 3 1 2.00 2 2 0
.............................................................................TGTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 1 1 2.00 2 2 0
..............................................................................AATCGCCAAATGGCAGGGTGTATA.................................................................................................................... 24 3 1 2.00 2 2 0
...............................................................................................................CACATACACCCTGCCATTTGGT..................................................................................... 22 1 1 2.00 2 2 0
............................................................................AACTTCGCCAAATGGCAGGGTGTA...................................................................................................................... 24 2 1 2.00 2 2 0
.............................................................................TTATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 2 1 2.00 2 2 0
.............................................................................................................AATACATACACCCTGCCATTTGGTAAAA................................................................................. 28 3 1 2.00 2 2 0
.............................................................................TTTTCGCCAAATGGCAGGGTGTA...................................................................................................................... 23 1 1 2.00 2 2 0
............................................................................TATTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 2 1 2.00 2 2 0
.............................................................................GAATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 3 1 2.00 2 2 0
.............................................................................AGTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 2 1 2.00 2 2 0
............................................................................CAATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 3 1 2.00 2 2 0
...............................................................................ATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 22 1 1 2.00 2 2 0
............................................................................TTATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 1 1 2.00 2 2 0
.............................................................................................................GATACATACACCCTGCCATTTGGT..................................................................................... 24 2 2 2.00 4 4 0
............................................................................AATTTCGCCAAATGGCAGGGTGTA...................................................................................................................... 24 3 1 2.00 2 2 0
...............................................................................TTCGCCAAATGGCAGGGTGTA...................................................................................................................... 21 0 1 2.00 2 2 0
.............................................................................................................TGTACATACACCCTGCCATTTGGT..................................................................................... 24 1 1 2.00 2 2 0
............................................................................ATTTACGCCAAATGGCAGGGTGTATG.................................................................................................................... 26 3 1 2.00 2 2 0
..............................................................................TTTCGCCAAATGGCAGGGTGTA...................................................................................................................... 22 1 1 2.00 2 2 0
.............................................................................................................AGTACATACACCCTGCCATTTGGT..................................................................................... 24 2 2 1.50 3 3 0
...............................................................................................................TACATACACCCCGCCATTTGGT..................................................................................... 22 1 1 1.00 1 1 0
...............................................................................................................TACATCCACCCTGCCATTTGGT..................................................................................... 22 1 1 1.00 1 1 0
.............................................................................AATTCGCCAAATGGCAGGGTGTA...................................................................................................................... 23 2 1 1.00 1 1 0
...............................................................................................................TACATACCCCCTGCCATTCGGT..................................................................................... 22 2 1 1.00 1 1 0
..............................................................................ATTCGCCAACGGGCAGGGTGTAT..................................................................................................................... 23 3 1 1.00 1 1 0
..............................................................................................................GTACATACCCCCTGCCATTCGGT..................................................................................... 23 3 1 1.00 1 1 0
................................................................................AAGCCAAATGGCAGGGTGTATG.................................................................................................................... 22 2 2 1.00 2 2 0
..................................................................................................................ATACACCCTGCCATTTGGT..................................................................................... 19 0 1 1.00 1 1 0
............................................................................TAATTCGCCACATGGCAGGGTGTAT..................................................................................................................... 25 3 1 1.00 1 1 0
............................................................................TAGTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 2 1 1.00 1 1 0
............................................................................TAATTCGCCAAATGGCAGGGTGTA...................................................................................................................... 24 2 1 1.00 1 1 0
..............................................................................................................AAACATACACCCTGCCATTTGGT..................................................................................... 23 2 3 1.00 3 3 0
.............................................................................TATTCGCCAAATGGCGGGGTGTAT..................................................................................................................... 24 2 1 1.00 1 1 0
...............................................................................AACGCCAACTGGCAGGGTGTATG.................................................................................................................... 23 3 1 1.00 1 1 0
.................................................................................AGCCAAATGGCAGGGTGTAT..................................................................................................................... 20 1 1 1.00 1 1 0
............................................................................TAAATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 3 1 1.00 1 1 0
................................................................................................................ACATACACACTGCCATTTGGTA.................................................................................... 22 1 1 1.00 1 1 0
.............................................................................AGTTCGCCAAATGGCAGAGTGTAT..................................................................................................................... 24 3 1 1.00 1 1 0
............................................................................ATTTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 2 1 1.00 1 1 0
.............................................................................ATATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 3 1 1.00 1 1 0
............................................................................AGTTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 3 1 1.00 1 1 0
............................................................................GAATTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 3 1 1.00 1 1 0
................................................................................................................AAATACACCCTGCCATTTGGT..................................................................................... 21 1 1 1.00 1 1 0
..............................................................................AATCGCCAAATGGCAGGGTGGATG.................................................................................................................... 24 3 1 1.00 1 1 0
.................................................................................CGCCAAATGGCAGGGTGTAT..................................................................................................................... 20 0 1 1.00 1 1 0
................................................................................................................CCATACACCCTGCCATTTGGTA.................................................................................... 22 1 1 1.00 1 1 0
..............................................................................ATTCGCCACATGGCCGGGTGTAT..................................................................................................................... 23 3 1 1.00 1 1 0
...............................................................................................................TACATACACCCTGCAATTTGGT..................................................................................... 22 1 1 1.00 1 1 0
............................................................................TGAATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 3 1 1.00 1 1 0
..............................................................................TATCGCCAAATGGCAGGGTGTA...................................................................................................................... 22 2 1 1.00 1 1 0
..............................................................................GTTCGCCAAATGGCAGGGTGTAA..................................................................................................................... 23 2 1 1.00 1 1 0
...............................................................................................................TACTTACACCCTGCCATTTGGT..................................................................................... 22 1 1 1.00 1 1 0
..............................................................................................................GAACATACACCCTGCCATTTGGT..................................................................................... 23 2 1 1.00 1 1 0
...............................................................................TTCGCCAAATGGCAGGGTGTATT.................................................................................................................... 23 1 1 1.00 1 1 0
.............................................................................TATTCGCCAAATGGCAGGGTGTA...................................................................................................................... 23 1 1 1.00 1 1 0
.............................................................................AATTCGCCAAATGGCAGGGTGTATA.................................................................................................................... 25 3 1 1.00 1 1 0
............................................................................................................AATTACATACACCCTGCCATTTGGT..................................................................................... 25 2 1 1.00 1 1 0
.............................................................................ACTTCGCCAAATGGCAGGGTGTAG..................................................................................................................... 24 2 1 1.00 1 1 0
.................................................................................................................CATACACCCTGCCATTTGGTA.................................................................................... 21 0 1 1.00 1 1 0
............................................................................TTTTTCGCCAAATGGCAGGGTGTATG.................................................................................................................... 26 1 1 1.00 1 1 0
................................................................................................................AGATACAACCTGCCATTTGGT..................................................................................... 21 2 1 1.00 1 1 0
..............................................................................CTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 23 0 1 1.00 1 1 0
.............................................................................TGTTCGCCAAATGGCAGGGTGTATAA................................................................................................................... 26 3 1 1.00 1 1 0
.................................................................................................................AATACACCCTGCCATTTGGT..................................................................................... 20 1 1 1.00 1 1 0
..............................................................................TTTCGCCAAACGGCAGGGTGTA...................................................................................................................... 22 2 1 1.00 1 1 0
..............................................................................TTTCGCCGAATGGCAGGGTGTAT..................................................................................................................... 23 2 1 1.00 1 1 0
..............................................................................ATTCGCCAAATGGCCGGGTGTAT..................................................................................................................... 23 2 1 1.00 1 1 0
...............................................................................AACGCCAAATGGCAGGGTGTATG.................................................................................................................... 23 2 1 1.00 1 1 0
.............................................................................AGATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 3 1 1.00 1 1 0
..............................................................................................................GTACATACACCCTGCCATTTGGT..................................................................................... 23 1 1 1.00 1 1 0
..............................................................................ATTCGCCAAATGGCAGGTTGTAT..................................................................................................................... 23 2 1 1.00 1 1 0
............................................................................TTAATCGCCAAATGGCAGGGTGTATG.................................................................................................................... 26 2 1 1.00 1 1 0
...................................................................................CCAAATGGCAGGGTGTAT..................................................................................................................... 18 0 2 1.00 2 2 0
............................................................................TAATTCGCCAAATGCCAGGGTGTAT..................................................................................................................... 25 3 1 1.00 1 0 1
.............................................................................GATTCGCCAACTGGCAGGGTGTAT..................................................................................................................... 24 3 1 1.00 1 1 0
.............................................................................................................TCCACATACACCCTGCCATTTGGTA.................................................................................... 25 2 1 1.00 1 1 0
............................................................................AAGTTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 25 3 1 1.00 1 1 0
...............................................................................................................TACATACACCCTGTCATTTGGT..................................................................................... 22 1 1 1.00 1 1 0
................................................................................ACGCCAAATGGCAGGGTGTATGA................................................................................................................... 23 2 1 1.00 1 1 0
..............................................................................ATTCGCCACATGGCAGGGTGTA...................................................................................................................... 22 2 1 1.00 1 1 0
..............................................................................GATCGCCAAATGGCAGGGTGTAT..................................................................................................................... 23 2 1 1.00 1 1 0
.............................................................................AATTCGCCAAATGGCAGGGTGTAA..................................................................................................................... 24 3 1 1.00 1 1 0
............................................................................TATTTCGCCAAATGGCAGGGTGT....................................................................................................................... 23 2 1 1.00 1 1 0
............................................................................AATTTCGCCAAATGGCAGGGTGTATG.................................................................................................................... 26 3 1 1.00 1 1 0
..............................................................................AATTGCCAAATGGCAGGGTGTATG.................................................................................................................... 24 3 3 0.67 2 2 0
.................................................................................CACCAAATGGCAGGGTGTAT..................................................................................................................... 20 1 2 0.50 1 1 0
.............................................................................................................TAAACATACACCCTGCCATTTGGT..................................................................................... 24 2 2 0.50 1 1 0
.................................................................................................................TATACACCCTGCCATTTGGTA.................................................................................... 21 1 2 0.50 1 1 0
.............................................................................AACTCGCCAAATGGCAGGGTGTAT..................................................................................................................... 24 3 2 0.50 1 1 0
.............................................................................................................AGAACATACACCCTGCCATTTGGTA.................................................................................... 25 3 2 0.50 1 1 0
..............................................................................................................AGACATACACCCTGCCATTTGGT..................................................................................... 23 2 2 0.50 1 1 0
.............................................................................................................AGAACATACACCCTGCCATTTGGT..................................................................................... 24 3 2 0.50 1 1 0
.............................................................................................................AATGCATACACCCTGCCATTTGGT..................................................................................... 24 3 3 0.33 1 1 0
............................................................................................................TAAAACATACACCCTGCCATTTGGT..................................................................................... 25 3 3 0.33 1 1 0
..............................................................................TATCGCCAAATGGTAGGGTGTAT..................................................................................................................... 23 3 3 0.33 1 1 0
..............................................................................................................AAAAATACACCCTGCCATTTGGT..................................................................................... 23 3 7 0.14 1 1 0
..............................................................................ATTCGCCAAATGACAGGGTGTC...................................................................................................................... 22 3 10 0.10 1 1 0

Generated: 04/30/2015 at 05:47 PM