ID:

rno-mir-299a

Coordinate:

chr6:133859324-133859386 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.2 -47.2

Sense Strand Reads

TGGCAGACATGAGCCTTCTTACAGCTGTCCCTGCTGTCACGCGGTACTTGAAGAAATGGTTTACCGTCCCACATACATTTTGAGTATGTATGTGGGACGGTAAACCGCTTCTTGGTATCCAGCCCAGCCATCCAGTCCGTACCATCCTGGACAAGCCTGAAGT
*****************************************.((((((..(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))))))))......**************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528818
Adult_testes_Mili_IP
........................................................TGGTTTACCGTCCCACATACAT..................................................................................... 22 0 1 70.00 70 65 5
........................................................................................TATGTGGGACGGTAAACCGCTTA.................................................... 23 1 1 58.00 58 58 0
........................................................................................TATGTGGGACGGTAAACCGCTTAA................................................... 24 2 1 56.00 56 56 0
........................................................................................TATGTGGGACGGTAAACCGCTT..................................................... 22 0 1 38.00 38 35 3
........................................................................................TATGTGGGACGGTAAACCGCTTT.................................................... 23 1 1 36.00 36 36 0
........................................................................................TATGTGGGACGGTAAACCGCTTAT................................................... 24 1 1 33.00 33 33 0
........................................................TGGTTTACCGTCCCACATACA...................................................................................... 21 0 1 20.00 20 20 0
........................................................................................TATGTGGGACGGTAAACCGCTTAAA.................................................. 25 3 1 18.00 18 18 0
........................................................................................TATGTGGGACGGTAAACCGCTAT.................................................... 23 2 1 16.00 16 16 0
........................................................................................TATGTGGGACGGTAAACCGCTAA.................................................... 23 2 1 16.00 16 16 0
........................................................................................TATGTGGGACGGTAAACCGCTAAA................................................... 24 3 1 12.00 12 12 0
........................................................................................TATGTGGGACGGTAAACCGCTTAG................................................... 24 2 1 11.00 11 11 0
........................................................................................TATGTGGGACGGTAAACCGCTTAAT.................................................. 25 2 1 9.00 9 9 0
........................................................................................TATGTGGGACGGTAAACCGCTTTA................................................... 24 2 1 9.00 9 9 0
........................................................TGGTTTACCGTCCCACATAC....................................................................................... 20 0 1 7.00 7 7 0
........................................................................................TATGTGGGACGGTAAACCGCTTTT................................................... 24 1 1 7.00 7 7 0
.......................................................ATGGTTTACCGTCCCACATACA...................................................................................... 22 0 1 6.00 6 6 0
.......................................................................................GTATGTGGGACGGTAAACCGCT...................................................... 22 0 1 5.00 5 5 0
.......................................................................................GTATGTGGGACGGTAAACCGA....................................................... 21 1 1 5.00 5 5 0
........................................................................................TATGTGGGACGGTAAACCGCTTAGA.................................................. 25 3 1 5.00 5 5 0
........................................................TGGTTTACCGTCCCACATACATAT................................................................................... 24 1 1 5.00 5 5 0
........................................................TGGTTTACCGTCCCACATACATT.................................................................................... 23 0 1 4.00 4 3 1
.........................................................................................ATGTGGGACGGTAAACCGCTTAAA.................................................. 24 3 1 4.00 4 4 0
.......................................................................................GTATGTGGGACGGTAAACCGC....................................................... 21 0 1 4.00 4 4 0
.........................................................................................ATGTGGGACGGTAAACCGCTTA.................................................... 22 1 1 4.00 4 4 0
........................................................................................TATGTGGGACGGTAAACCGCT...................................................... 21 0 1 4.00 4 4 0
.......................................................................................GTATGTGGGACGGTAAACCGCTAT.................................................... 24 2 1 4.00 4 4 0
........................................................................................TATGTGGGACGGTAAACCGCTTAGT.................................................. 25 2 1 4.00 4 4 0
........................................................................................TATGTGGGACGGTAAACCGCTTATA.................................................. 25 2 1 3.00 3 3 0
........................................................................................TATGTGGGACGGTAAACCGCTTTTAT................................................. 26 3 1 3.00 3 3 0
.......................................................................................ATATGTGGGACGGTAAACCGCTTT.................................................... 24 2 1 3.00 3 3 0
.......................................................ATGGTTTACCGTCCCACATACAA..................................................................................... 23 1 1 3.00 3 3 0
.........................................................................................ATGTGGGACGGTAAACCGCTAAAT.................................................. 24 3 1 3.00 3 3 0
.......................................................................................GTATGTGGGACGGTAAACCGCTA..................................................... 23 1 1 3.00 3 3 0
.......................................................................................GTATGTGGGACGGTAAACCGCA...................................................... 22 1 1 3.00 3 3 0
........................................................TGGTTTACCGTCCCCCATACAT..................................................................................... 22 1 1 3.00 3 2 1
.......................................................................................GTATGTGGGACGGTAAACCGCTAA.................................................... 24 2 1 3.00 3 3 0
........................................................TGGTTTACCGTCCCACATACAA..................................................................................... 22 1 1 3.00 3 3 0
........................................................................................TATGTGGGACGGTAAACCGCTAAT................................................... 24 2 1 3.00 3 3 0
........................................................TGGTTTACCGTCCCACATACAAT.................................................................................... 23 1 1 3.00 3 3 0
........................................................TGGTTTACCGTCCCACATACATAA................................................................................... 24 2 2 2.50 5 5 0
........................................................TGGTTTACCGTCCCACATACATA.................................................................................... 23 1 2 2.50 5 5 0
........................................................................................TATGTGGGACGGTAAACCGCTTATCT................................................. 26 3 1 2.00 2 2 0
.........................................................................................ATGTGGGACGGTAAACCGCTTGAA.................................................. 24 3 1 2.00 2 2 0
........................................................................................TATGTGGGACGGTAAACCGCTTGT................................................... 24 1 1 2.00 2 2 0
.......................................................................................ATATGTGGGACGGTAAACCGCTAA.................................................... 24 3 1 2.00 2 2 0
........................................................TGGTTTACCGTCCCACATACAC..................................................................................... 22 1 1 2.00 2 2 0
.........................................................................................ATGTGGGACGGTAAACCGCTTCAA.................................................. 24 2 1 2.00 2 2 0
........................................................................................TATGTGGGACGGTAAACCGCTATT................................................... 24 2 1 2.00 2 2 0
....................................................AAAATGGTTTACCGTCCCACATACATAA................................................................................... 28 3 1 2.00 2 2 0
.........................................................................................ATGTGGGACGGTAAACCGCTTTT................................................... 23 1 1 2.00 2 2 0
........................................................................................TATGTGGGACGGTAAACCGCTTTAT.................................................. 25 2 1 2.00 2 2 0
........................................................................................TATGTGGGACGGTAAACCGCTAAG................................................... 24 3 1 2.00 2 2 0
........................................................................................TATGTGGGACGGTAAACCGCTTGA................................................... 24 2 1 2.00 2 2 0
........................................................................................TATGTGGGACGGTAAACCGCTTAAC.................................................. 25 3 1 2.00 2 2 0
........................................................................................TATGTGGGACGGTAAACCGCTA..................................................... 22 1 1 2.00 2 2 0
........................................................................................TATGTGGGACGGTAAACCGCTTATT.................................................. 25 1 1 2.00 2 2 0
........................................................TGGTTTACCGTCCCACATACATAG................................................................................... 24 2 2 2.00 4 4 0
.........................................................................................ATGTGGGACGGTAAACCGCTTTAA.................................................. 24 3 1 2.00 2 2 0
.........................................................................................ATGTGGGACGGTAAACCGCTT..................................................... 21 0 1 2.00 2 2 0
........................................................TGGTTTACCGTCCCACATACATGT................................................................................... 24 1 1 2.00 2 2 0
.......................................................................................GTATGTGGGACGGTAAACCGCATTTA.................................................. 26 3 1 2.00 2 2 0
.........................................................................................ATGTGGGACGGTAAACCGCTTT.................................................... 22 1 1 2.00 2 2 0
........................................................TGGTTTACCGTCCCACATACATGA................................................................................... 24 2 2 1.50 3 3 0
........................................................TGGTTTACCGCCCCACATACAT..................................................................................... 22 1 1 1.00 1 1 0
........................................................TGGTTTACCGTCCCACCTACAT..................................................................................... 22 1 1 1.00 1 1 0
.........................................................................................ATGTGGGACGGTAAACCGCTTAA................................................... 23 2 1 1.00 1 1 0
........................................................TGGCTTACCGTCCCCCATACAT..................................................................................... 22 2 1 1.00 1 1 0
........................................................................................TATGTGGGACGGGCAACCGCTTA.................................................... 23 3 1 1.00 1 1 0
........................................................TGGCTTACCGTCCCCCATACATG.................................................................................... 23 3 1 1.00 1 1 0
.......................................................................................GTATGTGGGACGGTAAACCGAA...................................................... 22 2 2 1.00 2 2 0
........................................................TGGTTTACCGTCCCACATA........................................................................................ 19 0 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTACACCGCTTAAT.................................................. 25 3 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTTGAT.................................................. 25 2 1 1.00 1 1 0
.........................................................................................ATGTGGGACGGTAAACCGCTTAAT.................................................. 24 2 1 1.00 1 1 0
........................................................TGGTTTACCGTCCCACATACAAA.................................................................................... 23 2 3 1.00 3 3 0
........................................................................................TATGTGGGGCGGTAAACCGCTTAT................................................... 24 2 1 1.00 1 1 0
.......................................................................................GTATGTGGGACGGTCAACCGCAA..................................................... 23 3 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGA....................................................... 20 1 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTAAAT.................................................. 25 3 1 1.00 1 1 0
.......................................................ATGGTTTACCGTCACACATACA...................................................................................... 22 1 1 1.00 1 1 0
........................................................................................TATGTGAGACGGTAAACCGCTTGA................................................... 24 3 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTTTTA.................................................. 25 2 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTATA................................................... 24 3 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTTTGA.................................................. 25 3 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTTAAG.................................................. 25 3 1 1.00 1 1 0
........................................................TGGTTTACCGTCCCACATAAA...................................................................................... 21 1 1 1.00 1 1 0
.......................................................................................GTAGGTGGGACGGTAAACCGCTAA.................................................... 24 3 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGC....................................................... 20 0 1 1.00 1 1 0
.......................................................ATGGTTTACCGTCCCACATACC...................................................................................... 22 1 1 1.00 1 1 0
........................................................................................TATGTGGGCCGGTACACCGCTTA.................................................... 23 3 1 1.00 1 1 0
........................................................TGGTTTAACGTCCCACATACAT..................................................................................... 22 1 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTAAGT.................................................. 25 3 1 1.00 1 1 0
.........................................................................................ATGTGGGACGGTAAACCGCTAT.................................................... 22 2 1 1.00 1 1 0
........................................................................................AATGTGGGACGGTAAACCGCTTG.................................................... 23 2 1 1.00 1 1 0
........................................................TGGTTTACCGTCCCACATTCAT..................................................................................... 22 1 1 1.00 1 1 0
........................................................TGGTTTACCGTCCCACATACAAG.................................................................................... 23 2 1 1.00 1 1 0
.......................................................................................TTATGTGGGACGGTAAACCGCTT..................................................... 23 1 1 1.00 1 1 0
.........................................................................................ATGTGGGACGGTAAACCGCTTAT................................................... 23 1 1 1.00 1 1 0
.......................................................................................ATATGTGGGACGGTAAACCGCTTAA................................................... 25 3 1 1.00 1 1 0
........................................................TGGTTTACCGTCCCACATACATTAA.................................................................................. 25 2 1 1.00 1 1 0
........................................................................................GATGTGGGACGGTAAACCGCTTCA................................................... 24 2 1 1.00 1 1 0
.......................................................ATGGTTTACCGTCCCACATAC....................................................................................... 21 0 1 1.00 1 1 0
.......................................................................................GTATGTGGGACGGTAAACCGCTTTTT.................................................. 26 1 1 1.00 1 1 0
........................................................TGGTTTACCGTCCAACATAGA...................................................................................... 21 2 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTTC.................................................... 23 0 1 1.00 1 1 0
......................................................................................AATATGTGGGACGGTAAACCGCTTGT................................................... 26 3 1 1.00 1 1 0
........................................................TGGTTTACCGTCCCACATAA....................................................................................... 20 1 1 1.00 1 1 0
.........................................................................................ATGTGGGACGGCAAACCGCTTT.................................................... 22 2 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAGCCGCTTT.................................................... 23 2 1 1.00 1 1 0
........................................................................................TATGTGGGCCGGTAAACCGCTTA.................................................... 23 2 1 1.00 1 1 0
.......................................................................................GTATGTGGGACGGTAAACCGCAA..................................................... 23 2 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTAGA................................................... 24 3 1 1.00 1 1 0
........................................................TGGTTTACCGTCCCACATACATG.................................................................................... 23 1 1 1.00 1 1 0
........................................................................................TATGTTGGACGGTAAACCGCTTA.................................................... 23 2 1 1.00 1 1 0
.......................................................................................GTATGTGGGACGGTAAACCGCTAATT.................................................. 26 2 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACC......................................................... 18 0 2 1.00 2 2 0
........................................................................................TATGTGGGACCGTAAACCGCTTAAT.................................................. 25 3 1 1.00 1 0 1
........................................................................................TATGTGGGACGGTCAACCGCTTAG................................................... 24 3 1 1.00 1 1 0
.......................................................ATGGTTTACCGTCCCACATACACCT................................................................................... 25 2 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTTGAA.................................................. 25 3 1 1.00 1 1 0
........................................................TGGTTTACTGTCCCACATACAT..................................................................................... 22 1 1 1.00 1 1 0
......................................................................................AGTATGTGGGACGGTAAACCGCA...................................................... 23 2 1 1.00 1 1 0
.........................................................................................ATGTGGGACGGTACACCGCTTA.................................................... 22 2 1 1.00 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTAG.................................................... 23 2 1 1.00 1 1 0
........................................................................................AATGTGGGACGGTAAACCGCTTAA................................................... 24 3 1 1.00 1 1 0
..........................................................................................TGTGGGACGGTAAACCGCTTTAT.................................................. 23 2 1 1.00 1 1 0
.......................................................................................GTATGTGGGACGGTAAACCGCTTTAA.................................................. 26 3 1 1.00 1 1 0
.......................................................................................GTATGTGGGACGGTAAACCGTTAA.................................................... 24 3 3 0.67 2 2 0
........................................................................................TATGTGGGACGGTAAACCAC....................................................... 20 1 2 0.50 1 1 0
........................................................TGGTTTACCGTCCCACATACAAAT................................................................................... 24 2 2 0.50 1 1 0
.......................................................ATGGTTTACCGTCCCACATAT....................................................................................... 21 1 2 0.50 1 1 0
........................................................................................TATGTGGGACGGTAAACCGCTCAA................................................... 24 3 2 0.50 1 1 0
.......................................................ATGGTTTACCGTCCCACATACAAGA................................................................................... 25 3 2 0.50 1 1 0
........................................................TGGTTTACCGTCCCACATACAGA.................................................................................... 23 2 2 0.50 1 1 0
........................................................TGGTTTACCGTCCCACATACAAGA................................................................................... 24 3 2 0.50 1 1 0
........................................................TGGTTTACCGTCCCACATACGTAA................................................................................... 24 3 3 0.33 1 1 0
........................................................TGGTTTACCGTCCCACATACAAAAT.................................................................................. 25 3 3 0.33 1 1 0
........................................................................................TATGTGGGATGGTAAACCGCTAT.................................................... 23 3 3 0.33 1 1 0
........................................................TGGTTTACCGTCCCACATAAAAA.................................................................................... 23 3 7 0.14 1 1 0
.........................................................................................CTGTGGGACAGTAAACCGCTTA.................................................... 22 3 10 0.10 1 1 0

Anti-sense strand reads

ACCGTCTGTACTCGGAAGAATGTCGACAGGGACGACAGTGCGCCATGAACTTCTTTACCAAATGGCAGGGTGTATGTAAAACTCATACATACACCCTGCCATTTGGCGAAGAACCATAGGTCGGGTCGGTAGGTCAGGCATGGTAGGACCTGTTCGGACTTCA
**************************************.((((((..(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))))))))......*****************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
....................................................................................ATACATACACCCTGCCATTTGGT........................................................ 23 1 2 2.50 5 5
...................................................................................AATACATACACCCTGCCATTTGGT........................................................ 24 2 2 2.50 5 5
...................................................................................GATACATACACCCTGCCATTTGGT........................................................ 24 2 2 2.00 4 4
.........................................................CCAAATGGCAGGGTGTAT........................................................................................ 18 0 2 1.00 2 2
....................................................................................AAACATACACCCTGCCATTTGGT........................................................ 23 2 3 1.00 3 3
...................................................................................CATACATACACCCTGCCATTTGGT........................................................ 24 1 1 1.00 1 1
....................................................................................ATACATACACCCTGCCATTTGG......................................................... 22 0 1 1.00 1 1
....................................................AATTGCCAAATGGCAGGGTGTATG....................................................................................... 24 3 3 0.67 2 2
.......................................................CACCAAATGGCAGGGTGTAT........................................................................................ 20 1 2 0.50 1 1
....................................................................................AGACATACACCCTGCCATTTGGT........................................................ 23 2 2 0.50 1 1
..................................................................................TAAAACATACACCCTGCCATTTGGT........................................................ 25 3 3 0.33 1 1
...................................................................................AATGCATACACCCTGCCATTTGGT........................................................ 24 3 3 0.33 1 1
....................................................................................AAAAATACACCCTGCCATTTGGT........................................................ 23 3 7 0.14 1 1

Generated: 04/30/2015 at 05:47 PM